Carg26708-RA (mRNA) Silver-seed gourd

NameCarg26708-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_280 : 96378 .. 100184 (-)
Sequence length470
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAGCTCAATTACAATAATACTATACGAACCCTTGTCAATCTCGACAAATTCATTGCTAAGGGTTAGTTTAACCTAAGACTTCATAATCATAAAGATTTGGCGTGGTATAGTTAAGTTCCATATGGAACTTTTATTAATGGGTTGCGGATCAAAGCTTAATAGAATTCGATCTGGTTTTCTGCCGCGGCGGTGTTTTCTGTGTGCGCATGGTCTCCGGCGTTTGGATCTGCGTTCAACGGCCGAACTCCTAAGGTTGTATATTCTCCTCCCTTTCAGTTCTTGATAATTTCTCTGCTGATCATTCTTGGACAACATTTCAGAGCTCTTCTTTTGTTCGATTCACACATCTTAATATCCCCTTTTGTATATGTTTGTGCACGTAAGTTTTTTCGATAGATCCTAATCTGCTGGTAATCTTTACTCTACTGTCTCTGTTCTTTACGTTCTTCATAGCACGCTATTATGCTAAGTATACAAAATTCCAAGCGTGTTGGTTCTAGGGTTTATAACACATCGCAACTCCCAAATTTGATTAGGCAGAGAAATCATGTTGAAGATTAGCCATACATCTTAACAACTTATATGAAATTTCCGAGTAATCCACATTAGTCTTAGTCGTACAGAACAGTGACATGAAGGTGATAAACTATACTGGCAAGGAAGATGAGCATAGTTTCTAAGGCATGTGGGCTACCTTGGAGAAGGAGCTATTTCCGATTCAGAGAGAATTCTTGTAGACATGATACGAGTTTGTGGGGAAGTGCTTTGATGGACTGGTAGACACTCCTTAAGCTCTCCCAAAACATGACTTATGTCTGGCCTTTGAAGTACAGTTGATTGAGTGCATGACATGGCAAGTTCTATGATTTTCCAGGCTGAATTGTGGTTGAATTGTCCTCCTAACTTGAAATCAACAATTTGTTGAATGTCTCCTGTTTGGATCATTGGTTCCACCCAGTTTAATATGTGAAAATTCCCACCAGAAGTTCTTGTTATTGCAGGCTGTCCAGTGACCAGCTCAAGCAAGATAATGCCAAGGCTATAGATATCACTTTGCTTATTTACATTACCACACCCTTGAGTTCTGTATAAAAAGCACATAAAACATAGAATCAAGTGACTAAAACAATAAGAAACCAAAATCTCATTAAGTTAAGAGTTAATTAGGTCTCTTGTTTTACTTACCCAAGGTCGAGATATCCTGGTGTACCAGCTAGACGGGTAAAAGGTTGAGATTCATTTTCAGTTGCAAAAGTTCTAGACAATCCAAAATCAGCTATTTTGGCTCTCATTTTCGTGTCTAATAATATATTTGCAGGTTTTAAATCTCTATGGATAATTGGAGGTTTGCAACCATTGTGTAGATACTCCAATCCTGTAAAATGGCATACGAGAGTAATTGAGTTCGTTTTTTTTTTTAATATTGTCTTTAATGCTTTTGATAAAGACAATAGACCTCTATATATCTCTATAATGATATAGTATTGCCCACTTCGAACAAAAATTCTCATGGATTTTCCTTAGATTACCAAAAGATCTCATCCCGTTAAGGATATTGCCCTATACAAGAAAGAAAGAAAAGAAAATATATGTTCTAATTTAGTTTACTAACCCTGTGATACATCCACTGCAATTTGAAGTCTTCCAATCCAACTAAGAGTATCGGTGTTTGAATTTGTATTTTGGTTTTCTGCATGAAAAACATATAACAAGCTCAGCTCATTGATACCTGGAGCCATTTAGAAATTTCAGTGAGTGATTCTGAGTAGAGAAACATAATATCAATACTTAAGTGTTGCTGTAAACTTCCATTGGCCATATATTCATAAATGAGCGCCTTGTGTTGACCTTCATCACAGTATCCAAGTAGGCAAACCAAGTTGCGATGATGAAGAACCATCAGAAGTTGTGCCTGCATTTCAAGTGGGATGATTTCATTTGACTTCATCACTTGTTGGCCATCATATCAAATGGTTAAAGATGGGTAAAAACAAGCAATACTTATCTGCTAGCTAGACTCCAACTTTTTGCAGCCCAACCCGCCCACATGACAGAAGAAAAAAAATAAAAAAATTACATGCACCTCTATTCGAAATTCTTTATTGCCTTGTTGTGACGTTGCTGAAAGCATCTTCACTGCAACTGTAGTTTGATCCTTCAGAGAACCAAGATAAACTTTCCCAAATCCTCCTTCTCCAAGAACCACCCCAAAGTTTTCAGTAATACCCACAACCTCTTCGTAGCTATACTGTCTACCCTTCAATTTTAGTGGATCCTCTTGTTTTGATTCGATCGAGTTCTCTAAGGAAATAAGAATCAAATTTTCAACAAGAAGATAACAGCATTTAAAGGCGTACATTATAAAGTATTGTAATCAATATAAGAAATCAAATAAGAACATACCTTTGGGTTTTCTTGTACAGATTATAGTGACTCCCAGTAGGATTACAACAAAGACAAGGGCCGCTATAACAGAGAAAAGAATAGGAATTTCCCACTCTTTTTTCTGGTTGCATGGAGGTGACCAACAGAGTCCTGGATTGCCTTCCATACTGAATGAAGGAAAAAGAAAACCAAATTAACCAGAGAAAGAAAGGTGTAGTTTTGTATTGACTTTAACTTTTCAAAAGAAGAAGTGACCTTAAAATTAAGGTTCCATCCTTAGACTTTTGAAGAAGAGTGTCAGGTACGACGCCGGTGAGTTTATTCCCACTTAAATTTCTGGAAGGAGAAGTACTAACAATAGTTAACACATTGTATTATTTTAGGATAAGATGTTCTTAATGATACTAAATGTATTCTATTATATTGACAGATTTCTTGTGATGAGATGTTATACAGAAGTCGCAGCTGTGGCAATAGCACCAAGAATTCTGGTACTGCCCCTTCCAACTCATTGTAGGATAGATCTCTGAGAAACAAGAACTCAATTAAAACACCTTCATAATATTATGGCTTAATCTTTCAAAGCAAAAACGAAGATTTTTGGAGCATGAAAATAGAAAAGAAAAATACTTACAAATAGTTGATGGCAGTGAGCATGGAGAAGGAGGATGGGATATCTCCAGTTAAGTTGCTTCTGCTCAGGTTACTGCAAAAGTAGATTGGGAATTCTTTTGAATACATCACATAGTGGAATTAGTGAATTGCTAAAGGAGAGGAGAGGCTTTTGGTTGAGAAATTATACAGTGAAATGATTCTTGCCCATGGTTGGACATTGTTGCAATTCAAACCTTTCCATGAGAACTCTGGTGGGCTACAAGGATCACCTTCCCAATTTCTACTAAGCTTGTAATGTTGCTTGATATCACTTATTGCGTTCACTGTGAGTAGTATTAGTAGAAGATGTGTTGGTAATATTCGAGGGTAAGAAGAAGAAGAAGAGAAGAAGAAAGAAGAGAACGTACGATCTTGCAAGAAGGTAAGTGGATTTGGAGTGTCCATGGCGTACAAAATCTCGTACCCGTTGAGGATGGGAGGGAGGCTAGAGATGGATGTAGCAGAAATGGAAAATTTAACCTGCTGGCCGTGATTCACATCTAAGCCTTTTGTGCAAACTGTGTGTGGTTTGAGATATTGGAGTTGAATGGACTGTGTGATGGTTTGGACATCGTTGAGCACAATCTTCATATCCCGAAACTTCCCGGCTTCATGCTTCTCGATCTCGGCAAAATGAAAGCAAACATATAATCTATAACTTCTATAGGCTGTCTCTAATCCAAGTGGAAAACTTGAACCGTTGGCACGACATGCCGTCTGTAACATCAACATTGGCAACTTGTATGGATCACCATCGTTATCATTAG

mRNA sequence

GTAGCTCAATTACAATAATACTATACGAACCCTTGTCAATCTCGACAAATTCATTGCTAAGGGTTAGTTTAACCTAAGACTTCATAATCATAAAGATTTGGCGTGGTATAGTTAAGTTCCATATGGAACTTTTATTAATGGGTTGCGGATCAAAGCTTAATAGAATTCGATCTGGTTTTCTGCCGCGGCGGTGTTTTCTGTGTGCGCATGGTCTCCGGCGTTTGGATCTGCGTTCAACGGCCGAACTCCTAAGATTTCTTGTGATGAGATGTTATACAGAAGTCGCAGCTGTGGCAATAGCACCAAGAATTCTGGGTAAGAAGAAGAAGAAGAGAAGAAGAAAGAAGAGAACGTACGATCTTGCAAGAAGGCTGTCTCTAATCCAAGTGGAAAACTTGAACCGTTGGCACGACATGCCGTCTGTAACATCAACATTGGCAACTTGTATGGATCACCATCGTTATCATTAG

Coding sequence (CDS)

ATGGAACTTTTATTAATGGGTTGCGGATCAAAGCTTAATAGAATTCGATCTGGTTTTCTGCCGCGGCGGTGTTTTCTGTGTGCGCATGGTCTCCGGCGTTTGGATCTGCGTTCAACGGCCGAACTCCTAAGATTTCTTGTGATGAGATGTTATACAGAAGTCGCAGCTGTGGCAATAGCACCAAGAATTCTGGGTAAGAAGAAGAAGAAGAGAAGAAGAAAGAAGAGAACGTACGATCTTGCAAGAAGGCTGTCTCTAATCCAAGTGGAAAACTTGAACCGTTGGCACGACATGCCGTCTGTAACATCAACATTGGCAACTTGTATGGATCACCATCGTTATCATTAG

Protein sequence

MELLLMGCGSKLNRIRSGFLPRRCFLCAHGLRRLDLRSTAELLRFLVMRCYTEVAAVAIAPRILGKKKKKRRRKKRTYDLARRLSLIQVENLNRWHDMPSVTSTLATCMDHHRYH
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg26708Carg26708gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg26708-RACarg26708-RA-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg26708-RA.CDS.4Carg26708-RA.CDS.4CDS
Carg26708-RA.CDS.3Carg26708-RA.CDS.3CDS
Carg26708-RA.CDS.2Carg26708-RA.CDS.2CDS
Carg26708-RA.CDS.1Carg26708-RA.CDS.1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg26708-RA.five_prime_UTR.1Carg26708-RA.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg26708-RA.exon.4Carg26708-RA.exon.4exon
Carg26708-RA.exon.3Carg26708-RA.exon.3exon
Carg26708-RA.exon.2Carg26708-RA.exon.2exon
Carg26708-RA.exon.1Carg26708-RA.exon.1exon