Carg26702-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGGGTTCATTAATACTTCTTCTTCTTCTTCTTCTTCTTCACCAATTAATCACTTCTAAACCCTATACTCTGTTTCTTCTTCTTGCAGCACTCTCTACCCATCTGGCTCCAAGCGCTCCTCACCCACAAGTTCTTCAACGCCTGTGTTCTTCACGAACACGCCAAAAAGAACGAAAAAAACATCTTCTGTTTCGACTGTTCTCTCGGCATTTGCCCTCACTGCCTCTCCTCCCATTCTTCCCACAAACTCCTCCAGGTCAATTCTCAACCCATTTTCTTCAATACCCATTTCCCTCTTCTTTCTTTCTTAATTCCTTTTTCGTTGTTCTTCAGATTAGGCGTTATGTGTACCACGATGTGATTCGATTGGATGATGCTACTAAACTCATCGACTGCGCTTTTGTTCAAGTATGTTCTTGATTGAGTTTGCAGAAACAGAGTGATTTTATTGTTTATCTTAATTGGGTTTGCAGAAACAGAGTAGTTTTATTCTTTATCTTAATTGGGTTTGCAGAAACAGAGTGATCTGTTGTTTATCTTAATTGGGTTTGCAGAAACAGAGTAACTTTGTTGTTCATCTTAATTGGGTTTGCAGAAACAGAGTAACTTTGTTGTTCATCTTAATTGGATTTGCAGAAACAGAGTAATTTTGTTGTTCATCTTAATTGGGTTTGCAGAAACAGAGTAACTTTGTTGTTCATCTTAATTGGGTTTGAAGAAACAGAGTAATTTTGTTGTTCATCTTAATTGGGTTTGCAGAAACAGAGTAATTTTGTTGTTTTTGGTTGGTTGATTTAGTCTTACACTACGAATAGTGCGAAAGTGGTGTTTCTGAACCAAAGGCCACAGACCAGAAACTTCCGAGGCTCCTCCGGCAACCTCTGCAGCACCTGCGATAGAAGCCTTCAAGATCCTTATCTCTTTTGCTCTCTTTCCTGCAAG ATGCACTCTCTACCCATCTGGCTCCAAGCGCTCCTCACCCACAAGTTCTTCAACGCCTGTGTTCTTCACGAACACGCCAAAAAGAACGAAAAAAACATCTTCTGTTTCGACTGTTCTCTCGGCATTTGCCCTCACTGCCTCTCCTCCCATTCTTCCCACAAACTCCTCCAGATTAGGCGTTATGTGTACCACGATGTGATTCGATTGGATGATGCTACTAAACTCATCGACTGCGCTTTTGTTCAATCTTACACTACGAATAGTGCGAAAGTGGTGTTTCTGAACCAAAGGCCACAGACCAGAAACTTCCGAGGCTCCTCCGGCAACCTCTGCAGCACCTGCGATAGAAGCCTTCAAGATCCTTATCTCTTTTGCTCTCTTTCCTGCAAG ATGCACTCTCTACCCATCTGGCTCCAAGCGCTCCTCACCCACAAGTTCTTCAACGCCTGTGTTCTTCACGAACACGCCAAAAAGAACGAAAAAAACATCTTCTGTTTCGACTGTTCTCTCGGCATTTGCCCTCACTGCCTCTCCTCCCATTCTTCCCACAAACTCCTCCAGATTAGGCGTTATGTGTACCACGATGTGATTCGATTGGATGATGCTACTAAACTCATCGACTGCGCTTTTGTTCAATCTTACACTACGAATAGTGCGAAAGTGGTGTTTCTGAACCAAAGGCCACAGACCAGAAACTTCCGAGGCTCCTCCGGCAACCTCTGCAGCACCTGCGATAGAAGCCTTCAAGATCCTTATCTCTTTTGCTCTCTTTCCTGCAAG MHSLPIWLQALLTHKFFNACVLHEHAKKNEKNIFCFDCSLGICPHCLSSHSSHKLLQIRRYVYHDVIRLDDATKLIDCAFVQSYTTNSAKVVFLNQRPQTRNFRGSSGNLCSTCDRSLQDPYLFCSLSCK
BLAST of Carg26702-RA vs. NCBI nr
Match: XP_022959264.1 (uncharacterized protein LOC111460295 [Cucurbita moschata]) HSP 1 Score: 279.3 bits (713), Expect = 6.9e-72 Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0
BLAST of Carg26702-RA vs. NCBI nr
Match: XP_023548824.1 (uncharacterized protein LOC111807359 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 276.9 bits (707), Expect = 3.4e-71 Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 0
BLAST of Carg26702-RA vs. NCBI nr
Match: XP_023006650.1 (uncharacterized protein LOC111499311 [Cucurbita maxima]) HSP 1 Score: 273.9 bits (699), Expect = 2.9e-70 Identity = 128/130 (98.46%), Postives = 128/130 (98.46%), Query Frame = 0
BLAST of Carg26702-RA vs. NCBI nr
Match: XP_008458138.1 (PREDICTED: uncharacterized protein LOC103497663 [Cucumis melo]) HSP 1 Score: 263.8 bits (673), Expect = 3.0e-67 Identity = 124/130 (95.38%), Postives = 126/130 (96.92%), Query Frame = 0
BLAST of Carg26702-RA vs. NCBI nr
Match: XP_011656872.1 (PREDICTED: uncharacterized protein LOC101214475 [Cucumis sativus] >KGN46574.1 hypothetical protein Csa_6G109690 [Cucumis sativus]) HSP 1 Score: 263.8 bits (673), Expect = 3.0e-67 Identity = 124/130 (95.38%), Postives = 126/130 (96.92%), Query Frame = 0
BLAST of Carg26702-RA vs. TAIR10
Match: AT3G60670.1 (PLATZ transcription factor family protein) HSP 1 Score: 201.8 bits (512), Expect = 2.5e-52 Identity = 90/126 (71.43%), Postives = 106/126 (84.13%), Query Frame = 0
BLAST of Carg26702-RA vs. TAIR10
Match: AT2G12646.1 (PLATZ transcription factor family protein) HSP 1 Score: 181.8 bits (460), Expect = 2.7e-46 Identity = 79/126 (62.70%), Postives = 97/126 (76.98%), Query Frame = 0
BLAST of Carg26702-RA vs. TAIR10
Match: AT1G31040.1 (PLATZ transcription factor family protein) HSP 1 Score: 174.1 bits (440), Expect = 5.6e-44 Identity = 77/126 (61.11%), Postives = 95/126 (75.40%), Query Frame = 0
BLAST of Carg26702-RA vs. TAIR10
Match: AT1G32700.1 (PLATZ transcription factor family protein) HSP 1 Score: 131.3 bits (329), Expect = 4.2e-31 Identity = 66/127 (51.97%), Postives = 81/127 (63.78%), Query Frame = 0
BLAST of Carg26702-RA vs. TAIR10
Match: AT2G01818.1 (PLATZ transcription factor family protein) HSP 1 Score: 130.2 bits (326), Expect = 9.3e-31 Identity = 62/134 (46.27%), Postives = 86/134 (64.18%), Query Frame = 0
BLAST of Carg26702-RA vs. TrEMBL
Match: tr|A0A1S3C8E3|A0A1S3C8E3_CUCME (uncharacterized protein LOC103497663 OS=Cucumis melo OX=3656 GN=LOC103497663 PE=4 SV=1) HSP 1 Score: 263.8 bits (673), Expect = 2.0e-67 Identity = 124/130 (95.38%), Postives = 126/130 (96.92%), Query Frame = 0
BLAST of Carg26702-RA vs. TrEMBL
Match: tr|A0A0A0KCM1|A0A0A0KCM1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109690 PE=4 SV=1) HSP 1 Score: 263.8 bits (673), Expect = 2.0e-67 Identity = 124/130 (95.38%), Postives = 126/130 (96.92%), Query Frame = 0
BLAST of Carg26702-RA vs. TrEMBL
Match: tr|A0A2I4EAJ3|A0A2I4EAJ3_9ROSI (uncharacterized protein LOC108987841 isoform X2 OS=Juglans regia OX=51240 GN=LOC108987841 PE=4 SV=1) HSP 1 Score: 232.6 bits (592), Expect = 4.9e-58 Identity = 105/129 (81.40%), Postives = 115/129 (89.15%), Query Frame = 0
BLAST of Carg26702-RA vs. TrEMBL
Match: tr|A0A061DW44|A0A061DW44_THECC (PLATZ transcription factor family protein OS=Theobroma cacao OX=3641 GN=TCM_005554 PE=4 SV=1) HSP 1 Score: 231.9 bits (590), Expect = 8.3e-58 Identity = 105/126 (83.33%), Postives = 114/126 (90.48%), Query Frame = 0
BLAST of Carg26702-RA vs. TrEMBL
Match: tr|A0A1R3I7K6|A0A1R3I7K6_COCAP (Putative zinc ion binding protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_14309 PE=4 SV=1) HSP 1 Score: 231.9 bits (590), Expect = 8.3e-58 Identity = 103/127 (81.10%), Postives = 116/127 (91.34%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
|