Carg26683-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26683-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat
Location	Cucurbita_argyrosperma_scaffold_442 : 6824 .. 8371 (+)
Sequence length	1548

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTCGTCAGATATCGACATATTATCATCACTAAGTTCCCATTTAGCTTCGTCTTTCACCGACGTTTTAGTTCCTTGACTTCCGATTCCATCAACCCCACGGCGGCGCCGCCGACCTCCGCCCCCCACAACAACATTGGACTGGCAATTGACCCGACACACCTCCGCCGCGTCTGTACCGTTCTATATCAGCAGCAGAACTCCTCCGATCTCAGGCTTCACTCCAAACTTCGCGCCTGTAGTTTCAACCTCTCGCACGAATTCTTCCTCCAGGTCTGCAACACCTTCCCTTTCTCATGGCGACCCGTTTATCGCTTCTTCCAATTCACCGAAACCGACCCGAATTTCACTCACACGGCGGTCTCTTTCAACAAGATGATTGATATTGTTGGAAAATCTCGAAATATCGATCTCTTGTGGGATTTGATTCAGGAAATGGGACGGCGGCGTTTGGTGACGGATAAGACCTTCGTTGTTGCTCTGAGAACGCTGGCGGCGGCAAGGGAATTGAAGAAATGTGTGGAGCTTTTCCATTTGATGAATGGATATGGATTTGGTTATAGCTTAGTGACTTTGAACAAAGTAGTTGAGAAATTGTGTGGCTGTAAACTTGTGGATGAGGCTAAGTTTCTGGTTTTGAAATTGAAGGAATGGATCAAGGCTGATGGGGTTACTTACAAGTTATTGATTATGGGATTTTGCGATGTGGGAGATGTGATTGAAGCTTCAAAGATTTGGAACTTAATGGTGGAAGATGGGTTCGAGGCTGAAATGGAAGCTGTGGAGGAGATGATGAATGTTCTTTTCAAGGCCAACAAATTCGATGAAGCCTTGAAACTTTTTCAGGCAATGAGATCAAACAGGATGAATGATTTGATCCCTTCAACTTATAGTCTTGTGATTAAATGGTTATGCAACAAAGGCAAGATGAGGCAGGCCTACAATGTGTTCGACGAAATGCTTAAGAGAGGGTTTGAAGCTGATAATTCAGCACATTCTTCACTAATCTATGGGGTTTTAGCTAGAGGGAGGAGGAGGGAAGCTTATAACATAATGGGAAGAATTGAGAATCCTGATTTGAGTGTTTATCATGCTATGATTAAGGGGCTTTTGAGGCTGCGAAGCGCAAGTGAAGCGACACAAGTTTTTCGGGTAATGATTGAAAGAGGGTGTGAGCCTATAATGCATACATATGTAATGTTGTTGCAAGGACATCTAGGGAGAAGGGGGAGGAAGGGATTGGATCCATTGGTGAATTTTGATACCATTTTTGTTGGAGGTTTGGTGAAGTTTGGGAAGTCATTGGAGGCCACAAAGTATGTGGAGAGAGTGATGAAAAGAGGGCTTGAAGTGCCAAGGTTTGATTACAACAAGTTTTTGCATTACTATTCGAATGAGGAGGGAGTGGTGATGTTTAGAGAGGTGGGGAATAGGTTGAGAGAAGTTGGGTTGGTTGATTTGGCTGATATATTTCAGAGGTTTGGGGAGAAAATGTCCACTAGAGATAGGAGGAGAGATCGAGCAACTGTGTCGTCTCAGATTTGA

mRNA sequence

ATGGCAGTCGTCAGATATCGACATATTATCATCACTAAGTTCCCATTTAGCTTCGTCTTTCACCGACGTTTTAGTTCCTTGACTTCCGATTCCATCAACCCCACGGCGGCGCCGCCGACCTCCGCCCCCCACAACAACATTGGACTGGCAATTGACCCGACACACCTCCGCCGCGTCTGTACCGTTCTATATCAGCAGCAGAACTCCTCCGATCTCAGGCTTCACTCCAAACTTCGCGCCTGTAGTTTCAACCTCTCGCACGAATTCTTCCTCCAGGTCTGCAACACCTTCCCTTTCTCATGGCGACCCGTTTATCGCTTCTTCCAATTCACCGAAACCGACCCGAATTTCACTCACACGGCGGTCTCTTTCAACAAGATGATTGATATTGTTGGAAAATCTCGAAATATCGATCTCTTGTGGGATTTGATTCAGGAAATGGGACGGCGGCGTTTGGTGACGGATAAGACCTTCGTTGTTGCTCTGAGAACGCTGGCGGCGGCAAGGGAATTGAAGAAATGTGTGGAGCTTTTCCATTTGATGAATGGATATGGATTTGGTTATAGCTTAGTGACTTTGAACAAAGTAGTTGAGAAATTGTGTGGCTGTAAACTTGTGGATGAGGCTAAGTTTCTGGTTTTGAAATTGAAGGAATGGATCAAGGCTGATGGGGTTACTTACAAGTTATTGATTATGGGATTTTGCGATGTGGGAGATGTGATTGAAGCTTCAAAGATTTGGAACTTAATGGTGGAAGATGGGTTCGAGGCTGAAATGGAAGCTGTGGAGGAGATGATGAATGTTCTTTTCAAGGCCAACAAATTCGATGAAGCCTTGAAACTTTTTCAGGCAATGAGATCAAACAGGATGAATGATTTGATCCCTTCAACTTATAGTCTTGTGATTAAATGGTTATGCAACAAAGGCAAGATGAGGCAGGCCTACAATGTGTTCGACGAAATGCTTAAGAGAGGGTTTGAAGCTGATAATTCAGCACATTCTTCACTAATCTATGGGGTTTTAGCTAGAGGGAGGAGGAGGGAAGCTTATAACATAATGGGAAGAATTGAGAATCCTGATTTGAGTGTTTATCATGCTATGATTAAGGGGCTTTTGAGGCTGCGAAGCGCAAGTGAAGCGACACAAGTTTTTCGGGTAATGATTGAAAGAGGGTGTGAGCCTATAATGCATACATATGTAATGTTGTTGCAAGGACATCTAGGGAGAAGGGGGAGGAAGGGATTGGATCCATTGGTGAATTTTGATACCATTTTTGTTGGAGGTTTGGTGAAGTTTGGGAAGTCATTGGAGGCCACAAAGTATGTGGAGAGAGTGATGAAAAGAGGGCTTGAAGTGCCAAGGTTTGATTACAACAAGTTTTTGCATTACTATTCGAATGAGGAGGGAGTGGTGATGTTTAGAGAGGTGGGGAATAGGTTGAGAGAAGTTGGGTTGGTTGATTTGGCTGATATATTTCAGAGGTTTGGGGAGAAAATGTCCACTAGAGATAGGAGGAGAGATCGAGCAACTGTGTCGTCTCAGATTTGA

Coding sequence (CDS)

ATGGCAGTCGTCAGATATCGACATATTATCATCACTAAGTTCCCATTTAGCTTCGTCTTTCACCGACGTTTTAGTTCCTTGACTTCCGATTCCATCAACCCCACGGCGGCGCCGCCGACCTCCGCCCCCCACAACAACATTGGACTGGCAATTGACCCGACACACCTCCGCCGCGTCTGTACCGTTCTATATCAGCAGCAGAACTCCTCCGATCTCAGGCTTCACTCCAAACTTCGCGCCTGTAGTTTCAACCTCTCGCACGAATTCTTCCTCCAGGTCTGCAACACCTTCCCTTTCTCATGGCGACCCGTTTATCGCTTCTTCCAATTCACCGAAACCGACCCGAATTTCACTCACACGGCGGTCTCTTTCAACAAGATGATTGATATTGTTGGAAAATCTCGAAATATCGATCTCTTGTGGGATTTGATTCAGGAAATGGGACGGCGGCGTTTGGTGACGGATAAGACCTTCGTTGTTGCTCTGAGAACGCTGGCGGCGGCAAGGGAATTGAAGAAATGTGTGGAGCTTTTCCATTTGATGAATGGATATGGATTTGGTTATAGCTTAGTGACTTTGAACAAAGTAGTTGAGAAATTGTGTGGCTGTAAACTTGTGGATGAGGCTAAGTTTCTGGTTTTGAAATTGAAGGAATGGATCAAGGCTGATGGGGTTACTTACAAGTTATTGATTATGGGATTTTGCGATGTGGGAGATGTGATTGAAGCTTCAAAGATTTGGAACTTAATGGTGGAAGATGGGTTCGAGGCTGAAATGGAAGCTGTGGAGGAGATGATGAATGTTCTTTTCAAGGCCAACAAATTCGATGAAGCCTTGAAACTTTTTCAGGCAATGAGATCAAACAGGATGAATGATTTGATCCCTTCAACTTATAGTCTTGTGATTAAATGGTTATGCAACAAAGGCAAGATGAGGCAGGCCTACAATGTGTTCGACGAAATGCTTAAGAGAGGGTTTGAAGCTGATAATTCAGCACATTCTTCACTAATCTATGGGGTTTTAGCTAGAGGGAGGAGGAGGGAAGCTTATAACATAATGGGAAGAATTGAGAATCCTGATTTGAGTGTTTATCATGCTATGATTAAGGGGCTTTTGAGGCTGCGAAGCGCAAGTGAAGCGACACAAGTTTTTCGGGTAATGATTGAAAGAGGGTGTGAGCCTATAATGCATACATATGTAATGTTGTTGCAAGGACATCTAGGGAGAAGGGGGAGGAAGGGATTGGATCCATTGGTGAATTTTGATACCATTTTTGTTGGAGGTTTGGTGAAGTTTGGGAAGTCATTGGAGGCCACAAAGTATGTGGAGAGAGTGATGAAAAGAGGGCTTGAAGTGCCAAGGTTTGATTACAACAAGTTTTTGCATTACTATTCGAATGAGGAGGGAGTGGTGATGTTTAGAGAGGTGGGGAATAGGTTGAGAGAAGTTGGGTTGGTTGATTTGGCTGATATATTTCAGAGGTTTGGGGAGAAAATGTCCACTAGAGATAGGAGGAGAGATCGAGCAACTGTGTCGTCTCAGATTTGA

Protein sequence

MAVVRYRHIIITKFPFSFVFHRRFSSLTSDSINPTAAPPTSAPHNNIGLAIDPTHLRRVCTVLYQQQNSSDLRLHSKLRACSFNLSHEFFLQVCNTFPFSWRPVYRFFQFTETDPNFTHTAVSFNKMIDIVGKSRNIDLLWDLIQEMGRRRLVTDKTFVVALRTLAAARELKKCVELFHLMNGYGFGYSLVTLNKVVEKLCGCKLVDEAKFLVLKLKEWIKADGVTYKLLIMGFCDVGDVIEASKIWNLMVEDGFEAEMEAVEEMMNVLFKANKFDEALKLFQAMRSNRMNDLIPSTYSLVIKWLCNKGKMRQAYNVFDEMLKRGFEADNSAHSSLIYGVLARGRRREAYNIMGRIENPDLSVYHAMIKGLLRLRSASEATQVFRVMIERGCEPIMHTYVMLLQGHLGRRGRKGLDPLVNFDTIFVGGLVKFGKSLEATKYVERVMKRGLEVPRFDYNKFLHYYSNEEGVVMFREVGNRLREVGLVDLADIFQRFGEKMSTRDRRRDRATVSSQI

Homology

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BLAST of Carg26683-RA vs. NCBI nr
Match: XP_023538207.1 (putative pentatricopeptide repeat-containing protein At1g26500 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1015.0 bits (2623), Expect = 9.1e-293
Identity = 505/513 (98.44%), Postives = 509/513 (99.22%), Query Frame = 0


Query: 1   MAVVRYRHIIITKFPFSFVFHRRFSSLTSDSINPTAAPPTSAPHNNIGLAIDPTHLRRVC 60
           MAVVRYRHIIITKFPFSFVFH+RFSSLTSDSINPTAAPPTSAPHNNIGLAIDPTHLRRVC
Sbjct: 1   MAVVRYRHIIITKFPFSFVFHQRFSSLTSDSINPTAAPPTSAPHNNIGLAIDPTHLRRVC 60

Query: 61  TVLYQQQNSSDLRLHSKLRACSFNLSHEFFLQVCNTFPFSWRPVYRFFQFTETDPNFTHT 120
           TVLYQQQNSSDLRLHSKLRACSFNLSHEFFLQVCNTFPFSWRPVYRFFQFTETDPNFTHT
Sbjct: 61  TVLYQQQNSSDLRLHSKLRACSFNLSHEFFLQVCNTFPFSWRPVYRFFQFTETDPNFTHT 120

Query: 121 AVSFNKMIDIVGKSRNIDLLWDLIQEMGRRRLVTDKTFVVALRTLAAARELKKCVELFHL 180
           AVSFNKMIDIVGKSRNIDLLWDLIQEMGRRRLVTDKTFVVALRTLAAARELKKCVELFHL
Sbjct: 121 AVSFNKMIDIVGKSRNIDLLWDLIQEMGRRRLVTDKTFVVALRTLAAARELKKCVELFHL 180

Query: 181 MNGYGFGYSLVTLNKVVEKLCGCKLVDEAKFLVLKLKEWIKADGVTYKLLIMGFCDVGDV 240
           MNGYGFGYSLVTL KVVEKLCGCKLVDEAKF+VLKLKEWIK DGVTYKLLI GFCDVGDV
Sbjct: 181 MNGYGFGYSLVTLGKVVEKLCGCKLVDEAKFVVLKLKEWIKVDGVTYKLLIKGFCDVGDV 240

Query: 241 IEASKIWNLMVEDGFEAEMEAVEEMMNVLFKANKFDEALKLFQAMRSNRMNDLIPSTYSL 300
           IEASKIWNLMVEDGFEAEMEAVEEMMNVLFKANKFDEALKLFQAMRSNRMNDLIPSTYSL
Sbjct: 241 IEASKIWNLMVEDGFEAEMEAVEEMMNVLFKANKFDEALKLFQAMRSNRMNDLIPSTYSL 300

Query: 301 VIKWLCNKGKMRQAYNVFDEMLKRGFEADNSAHSSLIYGVLARGRRREAYNIMGRIENPD 360
           VIKWLCNKGKMRQAYNVFDEMLKRGFEADNSAHSSLIYGVLARGRRREAYNIMGRIENPD
Sbjct: 301 VIKWLCNKGKMRQAYNVFDEMLKRGFEADNSAHSSLIYGVLARGRRREAYNIMGRIENPD 360

Query: 361 LSVYHAMIKGLLRLRSASEATQVFRVMIERGCEPIMHTYVMLLQGHLGRRGRKGLDPLVN 420
           LSVYHAMIKGLLRLR ASEATQVFRVMIERGCEPIMHTYVMLLQGHLGRRGRKGLDPLVN
Sbjct: 361 LSVYHAMIKGLLRLRRASEATQVFRVMIERGCEPIMHTYVMLLQGHLGRRGRKGLDPLVN 420

Query: 421 FDTIFVGGLVKFGKSLEATKYVERVMKRGLEVPRFDYNKFLHYYSNEEGVVMFREVGNRL 480
           FDTIFVGGLVKFGKSLEATKYVERVMKRGLEVPRFDYNKFLHYYSNEEGVVMFREVGNRL
Sbjct: 421 FDTIFVGGLVKFGKSLEATKYVERVMKRGLEVPRFDYNKFLHYYSNEEGVVMFREVGNRL 480

Query: 481 REVGLVDLADIFQRFGEKMSTRDRRRDRATVSS 514
           REVGLVDLADIFQR+GEKM+TRDRRRDRATVSS
Sbjct: 481 REVGLVDLADIFQRYGEKMTTRDRRRDRATVSS 513

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BLAST of Carg26683-RA vs. NCBI nr
Match: XP_022951803.1 (putative pentatricopeptide repeat-containing protein At1g26500 isoform X2 [Cucurbita moschata])

HSP 1 Score: 1014.2 bits (2621), Expect = 1.5e-292
Identity = 505/515 (98.06%), Postives = 511/515 (99.22%), Query Frame = 0


Query: 1   MAVVRYRHIIITKFPFSFVFHRRFSSLTSDSINPTAAPPTSAPHNNIGLAIDPTHLRRVC 60
           MAVVRYRHIIITKFPFSFVFH+RFSSLTSDSINPTAAPPT+APHN+I LAIDPTHLRRVC
Sbjct: 1   MAVVRYRHIIITKFPFSFVFHQRFSSLTSDSINPTAAPPTAAPHNDIRLAIDPTHLRRVC 60

Query: 61  TVLYQQQNSSDLRLHSKLRACSFNLSHEFFLQVCNTFPFSWRPVYRFFQFTETDPNFTHT 120
           TVLYQQQNSSDLRLHSKLRACSFNLSHEFFLQVCNTFPFSWRPVYRFFQFTETDPNFTHT
Sbjct: 61  TVLYQQQNSSDLRLHSKLRACSFNLSHEFFLQVCNTFPFSWRPVYRFFQFTETDPNFTHT 120

Query: 121 AVSFNKMIDIVGKSRNIDLLWDLIQEMGRRRLVTDKTFVVALRTLAAARELKKCVELFHL 180
           AVSFNKMIDIVGKSRNIDLLWDLIQEMGRRRLVTDKTFVVALRTLAAARELKKCVELFHL
Sbjct: 121 AVSFNKMIDIVGKSRNIDLLWDLIQEMGRRRLVTDKTFVVALRTLAAARELKKCVELFHL 180

Query: 181 MNGYGFGYSLVTLNKVVEKLCGCKLVDEAKFLVLKLKEWIKADGVTYKLLIMGFCDVGDV 240
           MNGYGFGYSLVTLNKVVEKLCGCKLVDEAKFLVLKLKEWIKADGVTYKLLI GFCDVGDV
Sbjct: 181 MNGYGFGYSLVTLNKVVEKLCGCKLVDEAKFLVLKLKEWIKADGVTYKLLIKGFCDVGDV 240

Query: 241 IEASKIWNLMVEDGFEAEMEAVEEMMNVLFKANKFDEALKLFQAMRSNRMNDLIPSTYSL 300
           IEASKIWNLMVEDGFEAEMEAVEEMMNVLFKANKF EALKLFQAMRSNRMNDLIPSTYSL
Sbjct: 241 IEASKIWNLMVEDGFEAEMEAVEEMMNVLFKANKFGEALKLFQAMRSNRMNDLIPSTYSL 300

Query: 301 VIKWLCNKGKMRQAYNVFDEMLKRGFEADNSAHSSLIYGVLARGRRREAYNIMGRIENPD 360
           VIKWLCNKGKMRQAYNVFDEMLKRGFEADNSAHSSLIYGVLARGRRREAYNIMGRIENPD
Sbjct: 301 VIKWLCNKGKMRQAYNVFDEMLKRGFEADNSAHSSLIYGVLARGRRREAYNIMGRIENPD 360

Query: 361 LSVYHAMIKGLLRLRSASEATQVFRVMIERGCEPIMHTYVMLLQGHLGRRGRKGLDPLVN 420
           LSVYHAMIKGLLRLR ASEATQVFRVMIERGCEPIMHTYVMLLQGHLGRRGRKG+DPLVN
Sbjct: 361 LSVYHAMIKGLLRLRRASEATQVFRVMIERGCEPIMHTYVMLLQGHLGRRGRKGMDPLVN 420

Query: 421 FDTIFVGGLVKFGKSLEATKYVERVMKRGLEVPRFDYNKFLHYYSNEEGVVMFREVGNRL 480
           FDTIFVGGLVKFGKSLEATKYVERVMKRGLEVPRFDYNKFLHYYSNEEGVVMFREVGNRL
Sbjct: 421 FDTIFVGGLVKFGKSLEATKYVERVMKRGLEVPRFDYNKFLHYYSNEEGVVMFREVGNRL 480

Query: 481 REVGLVDLADIFQRFGEKMSTRDRRRDRATVSSQI 516
           REVGLVDLADIFQR+GEKM+TRDRRRDRATVSSQI
Sbjct: 481 REVGLVDLADIFQRYGEKMTTRDRRRDRATVSSQI 515

[Close]

BLAST of Carg26683-RA vs. NCBI nr
Match: XP_022951802.1 (putative pentatricopeptide repeat-containing protein At1g26500 isoform X1 [Cucurbita moschata])

HSP 1 Score: 1010.4 bits (2611), Expect = 2.2e-291
Identity = 503/513 (98.05%), Postives = 509/513 (99.22%), Query Frame = 0


Query: 1   MAVVRYRHIIITKFPFSFVFHRRFSSLTSDSINPTAAPPTSAPHNNIGLAIDPTHLRRVC 60
           MAVVRYRHIIITKFPFSFVFH+RFSSLTSDSINPTAAPPT+APHN+I LAIDPTHLRRVC
Sbjct: 1   MAVVRYRHIIITKFPFSFVFHQRFSSLTSDSINPTAAPPTAAPHNDIRLAIDPTHLRRVC 60

Query: 61  TVLYQQQNSSDLRLHSKLRACSFNLSHEFFLQVCNTFPFSWRPVYRFFQFTETDPNFTHT 120
           TVLYQQQNSSDLRLHSKLRACSFNLSHEFFLQVCNTFPFSWRPVYRFFQFTETDPNFTHT
Sbjct: 61  TVLYQQQNSSDLRLHSKLRACSFNLSHEFFLQVCNTFPFSWRPVYRFFQFTETDPNFTHT 120

Query: 121 AVSFNKMIDIVGKSRNIDLLWDLIQEMGRRRLVTDKTFVVALRTLAAARELKKCVELFHL 180
           AVSFNKMIDIVGKSRNIDLLWDLIQEMGRRRLVTDKTFVVALRTLAAARELKKCVELFHL
Sbjct: 121 AVSFNKMIDIVGKSRNIDLLWDLIQEMGRRRLVTDKTFVVALRTLAAARELKKCVELFHL 180

Query: 181 MNGYGFGYSLVTLNKVVEKLCGCKLVDEAKFLVLKLKEWIKADGVTYKLLIMGFCDVGDV 240
           MNGYGFGYSLVTLNKVVEKLCGCKLVDEAKFLVLKLKEWIKADGVTYKLLI GFCDVGDV
Sbjct: 181 MNGYGFGYSLVTLNKVVEKLCGCKLVDEAKFLVLKLKEWIKADGVTYKLLIKGFCDVGDV 240

Query: 241 IEASKIWNLMVEDGFEAEMEAVEEMMNVLFKANKFDEALKLFQAMRSNRMNDLIPSTYSL 300
           IEASKIWNLMVEDGFEAEMEAVEEMMNVLFKANKF EALKLFQAMRSNRMNDLIPSTYSL
Sbjct: 241 IEASKIWNLMVEDGFEAEMEAVEEMMNVLFKANKFGEALKLFQAMRSNRMNDLIPSTYSL 300

Query: 301 VIKWLCNKGKMRQAYNVFDEMLKRGFEADNSAHSSLIYGVLARGRRREAYNIMGRIENPD 360
           VIKWLCNKGKMRQAYNVFDEMLKRGFEADNSAHSSLIYGVLARGRRREAYNIMGRIENPD
Sbjct: 301 VIKWLCNKGKMRQAYNVFDEMLKRGFEADNSAHSSLIYGVLARGRRREAYNIMGRIENPD 360

Query: 361 LSVYHAMIKGLLRLRSASEATQVFRVMIERGCEPIMHTYVMLLQGHLGRRGRKGLDPLVN 420
           LSVYHAMIKGLLRLR ASEATQVFRVMIERGCEPIMHTYVMLLQGHLGRRGRKG+DPLVN
Sbjct: 361 LSVYHAMIKGLLRLRRASEATQVFRVMIERGCEPIMHTYVMLLQGHLGRRGRKGMDPLVN 420

Query: 421 FDTIFVGGLVKFGKSLEATKYVERVMKRGLEVPRFDYNKFLHYYSNEEGVVMFREVGNRL 480
           FDTIFVGGLVKFGKSLEATKYVERVMKRGLEVPRFDYNKFLHYYSNEEGVVMFREVGNRL
Sbjct: 421 FDTIFVGGLVKFGKSLEATKYVERVMKRGLEVPRFDYNKFLHYYSNEEGVVMFREVGNRL 480

Query: 481 REVGLVDLADIFQRFGEKMSTRDRRRDRATVSS 514
           REVGLVDLADIFQR+GEKM+TRDRRRDRATVSS
Sbjct: 481 REVGLVDLADIFQRYGEKMTTRDRRRDRATVSS 513

[Close]

BLAST of Carg26683-RA vs. NCBI nr
Match: XP_023002788.1 (putative pentatricopeptide repeat-containing protein At1g26500 [Cucurbita maxima])

HSP 1 Score: 993.4 bits (2567), Expect = 2.8e-286
Identity = 494/513 (96.30%), Postives = 502/513 (97.86%), Query Frame = 0


Query: 1   MAVVRYRHIIITKFPFSFVFHRRFSSLTSDSINPTAAPPTSAPHNNIGLAIDPTHLRRVC 60
           MAVV+YRHIII+KFPFS +FH+RFSS TSDSINPTAAPPTSA HNNIGLAIDPTHLRRVC
Sbjct: 1   MAVVKYRHIIISKFPFSSIFHQRFSSFTSDSINPTAAPPTSASHNNIGLAIDPTHLRRVC 60

Query: 61  TVLYQQQNSSDLRLHSKLRACSFNLSHEFFLQVCNTFPFSWRPVYRFFQFTETDPNFTHT 120
           TVLYQQQNSSDLRLHSKLRACSFNLSHEFFLQVCNTFPFSWRPVYRFFQFTETDPNFTHT
Sbjct: 61  TVLYQQQNSSDLRLHSKLRACSFNLSHEFFLQVCNTFPFSWRPVYRFFQFTETDPNFTHT 120

Query: 121 AVSFNKMIDIVGKSRNIDLLWDLIQEMGRRRLVTDKTFVVALRTLAAARELKKCVELFHL 180
           AVSFNKMIDIVGKSRNIDLLWDLIQEMGRRRLVTDKTFVVALRTLAAARELKKCVELFHL
Sbjct: 121 AVSFNKMIDIVGKSRNIDLLWDLIQEMGRRRLVTDKTFVVALRTLAAARELKKCVELFHL 180

Query: 181 MNGYGFGYSLVTLNKVVEKLCGCKLVDEAKFLVLKLKEWIKADGVTYKLLIMGFCDVGDV 240
           MNGYGFGYSLV+LNKVVEKLCGCKL DEAKFLVLKLKEWIKADGVTYKLLI GFCDVGDV
Sbjct: 181 MNGYGFGYSLVSLNKVVEKLCGCKLADEAKFLVLKLKEWIKADGVTYKLLIKGFCDVGDV 240

Query: 241 IEASKIWNLMVEDGFEAEMEAVEEMMNVLFKANKFDEALKLFQAMRSNRMNDLIPSTYSL 300
           IEASKIWNLMVE+GFEAEMEAVEEMMNVLFKANK DEALKLFQAMRSNRMNDLIP TYSL
Sbjct: 241 IEASKIWNLMVEEGFEAEMEAVEEMMNVLFKANKLDEALKLFQAMRSNRMNDLIPPTYSL 300

Query: 301 VIKWLCNKGKMRQAYNVFDEMLKRGFEADNSAHSSLIYGVLARGRRREAYNIMGRIENPD 360
           VIKWLCNKGK RQAYNVFDEMLKRGFEADNSAHSSLIYGVLARGRRREAYNIMGRIE PD
Sbjct: 301 VIKWLCNKGKTRQAYNVFDEMLKRGFEADNSAHSSLIYGVLARGRRREAYNIMGRIEKPD 360

Query: 361 LSVYHAMIKGLLRLRSASEATQVFRVMIERGCEPIMHTYVMLLQGHLGRRGRKGLDPLVN 420
           LSVYHAMIKGLLRLR ASEATQVFR MIERGCEPIMHTYVMLLQGHLGRRGRKGLDPLVN
Sbjct: 361 LSVYHAMIKGLLRLRRASEATQVFREMIERGCEPIMHTYVMLLQGHLGRRGRKGLDPLVN 420

Query: 421 FDTIFVGGLVKFGKSLEATKYVERVMKRGLEVPRFDYNKFLHYYSNEEGVVMFREVGNRL 480
           FDTIFVGGLVKFGKSLEATKYVERVMKRGLEVPRFDYNKFLHYYSNEEGVVMFREVGNRL
Sbjct: 421 FDTIFVGGLVKFGKSLEATKYVERVMKRGLEVPRFDYNKFLHYYSNEEGVVMFREVGNRL 480

Query: 481 REVGLVDLADIFQRFGEKMSTRDRRRDRATVSS 514
           REVGLVDLADIFQR+GEKM+TRDRRRDRATVSS
Sbjct: 481 REVGLVDLADIFQRYGEKMTTRDRRRDRATVSS 513

[Close]

BLAST of Carg26683-RA vs. NCBI nr
Match: XP_022131400.1 (putative pentatricopeptide repeat-containing protein At1g26500 [Momordica charantia])

HSP 1 Score: 862.1 bits (2226), Expect = 9.8e-247
Identity = 432/515 (83.88%), Postives = 462/515 (89.71%), Query Frame = 0


Query: 1   MAVVRYRHIIITKFPFSFVFHRRFSSLTSDSINPTAAPPTSAPHNNIGLAIDPTHLRRVC 60
           MAVVRYR III KF  +F+FH+RFSS TS+S     A PT+AP      AI+P  LRRVC
Sbjct: 1   MAVVRYRRIIIDKFSLTFIFHQRFSSFTSNS----TAHPTAAP-----AAINPARLRRVC 60

Query: 61  TVLYQQQNSSDLRLHSKLRACSFNLSHEFFLQVCNTFPFSWRPVYRFFQFTETDPNFTHT 120
           TVLYQQQNS D RLHSKLRAC+FNLSHEFFL+VCNTFP SWRPVYRFFQFTETDPNFTHT
Sbjct: 61  TVLYQQQNSPDPRLHSKLRACNFNLSHEFFLRVCNTFPLSWRPVYRFFQFTETDPNFTHT 120

Query: 121 AVSFNKMIDIVGKSRNIDLLWDLIQEMGRRRLVTDKTFVVALRTLAAARELKKCVELFHL 180
           AVSFNKMID+ G SRNI LLW LIQE GRRRLVTDKTFV+ALRTLAAARELKKCVE FHL
Sbjct: 121 AVSFNKMIDVAGNSRNIGLLWVLIQEAGRRRLVTDKTFVIALRTLAAARELKKCVEFFHL 180

Query: 181 MNGYGFGYSLVTLNKVVEKLCGCKLVDEAKFLVLKLKEWIKADGVTYKLLIMGFCDVGDV 240
           M+GYGFGYSLVTLNKVVEKLC CKLVDEAKFLV KLKEWIK DGVTYK LI GFC+VGD+
Sbjct: 181 MDGYGFGYSLVTLNKVVEKLCSCKLVDEAKFLVFKLKEWIKPDGVTYKWLIKGFCEVGDL 240

Query: 241 IEASKIWNLMVEDGFEAEMEAVEEMMNVLFKANKFDEALKLFQAMRSNRMNDLIPSTYSL 300
           IEASK+WN MV++GFE +MEAVEEMMN LFK NK DEALKLFQA+RSNRMNDLIPSTYSL
Sbjct: 241 IEASKLWNFMVDEGFEPDMEAVEEMMNALFKTNKPDEALKLFQAVRSNRMNDLIPSTYSL 300

Query: 301 VIKWLCNKGKMRQAYNVFDEMLKRGFEADNSAHSSLIYGVLARGRRREAYNIMGRIENPD 360
           V KWLCNKGK+RQAY VFDEM KRG E DNSAHSSLIYG+LARGRRRE Y IM RIENPD
Sbjct: 301 VNKWLCNKGKVRQAYVVFDEMHKRGLETDNSAHSSLIYGLLARGRRREGYRIMERIENPD 360

Query: 361 LSVYHAMIKGLLRLRSASEATQVFRVMIERGCEPIMHTYVMLLQGHLGRRGRKGLDPLVN 420
           L VYHA+IKGLLRLR A+EATQVFR MIERGCEPIMHTYVMLLQGHLG+RGR+G DPLVN
Sbjct: 361 LGVYHALIKGLLRLRRANEATQVFREMIERGCEPIMHTYVMLLQGHLGKRGRRGFDPLVN 420

Query: 421 FDTIFVGGLVKFGKSLEATKYVERVMKRGLEVPRFDYNKFLHYYSNEEGVVMFREVGNRL 480
           FDTIFVGGLVK G+SLEATKYVER+MKRG+EVPRFDYNKFLHYYSNEEGVVMFREVGNRL
Sbjct: 421 FDTIFVGGLVKNGQSLEATKYVERMMKRGVEVPRFDYNKFLHYYSNEEGVVMFREVGNRL 480

Query: 481 REVGLVDLADIFQRFGEKMSTRDRRRDRATVSSQI 516
           RE GLVDLADIFQR+GEKM+TRDRRR+RATVSS I
Sbjct: 481 REAGLVDLADIFQRYGEKMATRDRRRNRATVSSVI 506

[Close]

BLAST of Carg26683-RA vs. TAIR10
Match: AT1G26500.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 612.5 bits (1578), Expect = 2.5e-175
Identity = 298/492 (60.57%), Postives = 379/492 (77.03%), Query Frame = 0


Query: 18  FVFHRRFSSLTSDSINPTAAPPTSAPHNNIGLAIDPTHLRRVCTVLYQQQNSSDLRLHSK 77
           F+ + RF    S  + PT   P           I+  HL RVCT+LYQQQNS D RL SK
Sbjct: 22  FILNHRF---FSTELTPTTITP-----------INQDHLLRVCTILYQQQNSPDSRLVSK 81

Query: 78  LRACSFNLSHEFFLQVCNTFPFSWRPVYRFFQFTET-DPNFTHTAVSFNKMIDIVGKSRN 137
           L +  F L+HEFFLQVCN FP SWRPV+RFF +++T  P+FTHT+ + NKM+ I+G SRN
Sbjct: 82  LSSTKFQLTHEFFLQVCNNFPLSWRPVHRFFLYSQTHHPDFTHTSTTSNKMLAIIGNSRN 141

Query: 138 IDLLWDLIQEMGRRRLVTDKTFVVALRTLAAARELKKCVELFHLMNGYGFGYSLVTLNKV 197
           +DL W+L QE+G+R LV DKTF + L+TLA+ARELKKCV  FHLMNG+G+ Y++ T+N+ 
Sbjct: 142 MDLFWELAQEIGKRGLVNDKTFRIVLKTLASARELKKCVNYFHLMNGFGYLYNVETMNRG 201

Query: 198 VEKLCGCKLVDEAKFLVLKLKEWIKADGVTYKLLIMGFCDVGDVIEASKIWNLMVEDGFE 257
           VE LC  KLV+EAKF+ +KLKE+IK D +TY+ +I GFCDVGD+IEA+K+WNLM+++GF+
Sbjct: 202 VETLCKEKLVEEAKFVFIKLKEFIKPDEITYRTMIQGFCDVGDLIEAAKLWNLMMDEGFD 261

Query: 258 AEMEAVEEMMNVLFKANKFDEALKLFQAMRSNRMNDLIPSTYSLVIKWLCNKGKMRQAYN 317
            ++EA +++M  L K N+FDEA K+F  M S R  DL    Y ++I WLC  G++  A  
Sbjct: 262 VDIEAGKKIMETLLKKNQFDEASKVFYVMVSKRGGDLDGGFYRVMIDWLCKNGRIDMARK 321

Query: 318 VFDEMLKRGFEADNSAHSSLIYGVLARGRRREAYNIMGRIENPDLSVYHAMIKGLLRLRS 377
           VFDEM +RG   DN   +SLIYG+L + R  EAY ++  +ENPD+S+YH +IKGL++++ 
Sbjct: 322 VFDEMRERGVYVDNLTWASLIYGLLVKRRVVEAYGLVEGVENPDISIYHGLIKGLVKIKR 381

Query: 378 ASEATQVFRVMIERGCEPIMHTYVMLLQGHLGRRGRKGLDPLVNFDTIFVGGLVKFGKSL 437
           ASEAT+VFR MI+RGCEPIMHTY+MLLQGHLGRRGRKG DPLVNFDTIFVGG++K GK L
Sbjct: 382 ASEATEVFRKMIQRGCEPIMHTYLMLLQGHLGRRGRKGPDPLVNFDTIFVGGMIKAGKRL 441

Query: 438 EATKYVERVMKRGLEVPRFDYNKFLHYYSNEEGVVMFREVGNRLREVGLVDLADIFQRFG 497
           E TKY+ER +KRGLEVPRFDY+KFLHYYSNEEGVVMF E+  +LREV L DLADIFQR+G
Sbjct: 442 ETTKYIERTLKRGLEVPRFDYSKFLHYYSNEEGVVMFEEMAKKLREVSLFDLADIFQRYG 499

Query: 498 EKMSTRDRRRDR 509
           EKM+TR+RRRDR
Sbjct: 502 EKMTTRERRRDR 499

[Close]

BLAST of Carg26683-RA vs. TAIR10
Match: AT3G62540.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 113.6 bits (283), Expect = 3.6e-25
Identity = 62/190 (32.63%), Postives = 109/190 (57.37%), Query Frame = 0


Query: 52  DPTHLRRVCTVLYQQQNSSDLRLHSKLRACSFNLSHEFFLQVCNTFPFSWRPVYRFFQFT 111
           +P  + RVC V+  +  + D  + + L     +LSH+  ++V   F  + +P +RFF + 
Sbjct: 127 NPEEVERVCKVI-DELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWA 186

Query: 112 ETDPNFTHTAVSFNKMIDIVGKSRNIDLLWDLIQEMGRRRLVTDKTFVVALRTLAAAREL 171
                F H + ++N M+ I+ K+R  + +  +++EMG + L+T +TF +A++  AAA+E 
Sbjct: 187 AERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKER 246

Query: 172 KKCVELFHLMNGYGFGYSLVTLNKVVEKLCGCKLVDEAKFLVLKLKEWIKADGVTYKLLI 231
           KK V +F LM  Y F   + T+N +++ L   KL  EA+ L  KLKE    + +TY +L+
Sbjct: 247 KKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLL 306

Query: 232 MGFCDVGDVI 242
            G+C V ++I
Sbjct: 307 NGWCRVRNLI 315

[Close]

BLAST of Carg26683-RA vs. TAIR10
Match: AT3G62470.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 113.2 bits (282), Expect = 4.7e-25
Identity = 62/190 (32.63%), Postives = 109/190 (57.37%), Query Frame = 0


Query: 52  DPTHLRRVCTVLYQQQNSSDLRLHSKLRACSFNLSHEFFLQVCNTFPFSWRPVYRFFQFT 111
           +P  + RVC V+  +  + D  + + L     +LSH+  ++V   F  + +P +RFF + 
Sbjct: 127 NPEEVERVCKVI-DELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWA 186

Query: 112 ETDPNFTHTAVSFNKMIDIVGKSRNIDLLWDLIQEMGRRRLVTDKTFVVALRTLAAAREL 171
                F H + ++N M+ I+ K+R  + +  +++EMG + L+T +TF +A++  AAA+E 
Sbjct: 187 AERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKER 246

Query: 172 KKCVELFHLMNGYGFGYSLVTLNKVVEKLCGCKLVDEAKFLVLKLKEWIKADGVTYKLLI 231
           KK V +F LM  Y F   + T+N +++ L   KL  EA+ L  KLKE    + +TY +L+
Sbjct: 247 KKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLL 306

Query: 232 MGFCDVGDVI 242
            G+C V ++I
Sbjct: 307 NGWCRVRNLI 315

[Close]

BLAST of Carg26683-RA vs. TAIR10
Match: AT5G14820.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 113.2 bits (282), Expect = 4.7e-25
Identity = 62/190 (32.63%), Postives = 109/190 (57.37%), Query Frame = 0


Query: 52  DPTHLRRVCTVLYQQQNSSDLRLHSKLRACSFNLSHEFFLQVCNTFPFSWRPVYRFFQFT 111
           +P  + RVC V+  +  + D  + + L     +LSH+  ++V   F  + +P +RFF + 
Sbjct: 126 NPEEVERVCKVI-DELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWA 185

Query: 112 ETDPNFTHTAVSFNKMIDIVGKSRNIDLLWDLIQEMGRRRLVTDKTFVVALRTLAAAREL 171
                F H + ++N M+ I+ K+R  + +  +++EMG + L+T +TF +A++  AAA+E 
Sbjct: 186 AERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKER 245

Query: 172 KKCVELFHLMNGYGFGYSLVTLNKVVEKLCGCKLVDEAKFLVLKLKEWIKADGVTYKLLI 231
           KK V +F LM  Y F   + T+N +++ L   KL  EA+ L  KLKE    + +TY +L+
Sbjct: 246 KKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLL 305

Query: 232 MGFCDVGDVI 242
            G+C V ++I
Sbjct: 306 NGWCRVRNLI 314

[Close]

BLAST of Carg26683-RA vs. TAIR10
Match: AT3G22670.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 100.1 bits (248), Expect = 4.1e-21
Identity = 58/197 (29.44%), Postives = 99/197 (50.25%), Query Frame = 0


Query: 58  RVCTVLYQQQNSSDLRLHSKLRACSFNLSHEFFLQVCNTFPFSWRPVYRFFQFTETDPNF 117
           +VC  L ++  S +  +  +L  C   ++    LQV   F   W   Y FF +  +   +
Sbjct: 104 KVCDFLNKKDTSHE-DVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWANSQTGY 163

Query: 118 THTAVSFNKMIDIVGKSRNIDLLWDLIQEMGRR---RLVTDKTFVVALRTLAAARELKKC 177
            H+  ++N M+D++GK RN DL+W+L+ EM +    +LVT  T    +R LA + +  K 
Sbjct: 164 VHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYNKA 223

Query: 178 VELF-HLMNGYGFGYSLVTLNKVVEKLCGCKLVDEAKFLVLKLKEWIKADGVTYKLLIMG 237
           V+ F  +   YG     + +N +++ L     ++ A  + LKL + IK D  T+ +LI G
Sbjct: 224 VDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPDARTFNILIHG 283

Query: 238 FCDVGDVIEASKIWNLM 251
           FC      +A  + +LM
Sbjct: 284 FCKARKFDDARAMMDLM 299

[Close]

BLAST of Carg26683-RA vs. Swiss-Prot
Match: sp|Q9FZD4|PPR59_ARATH (Putative pentatricopeptide repeat-containing protein At1g26500 OS=Arabidopsis thaliana OX=3702 GN=At1g26500 PE=3 SV=1)

HSP 1 Score: 612.5 bits (1578), Expect = 4.4e-174
Identity = 298/492 (60.57%), Postives = 379/492 (77.03%), Query Frame = 0


Query: 18  FVFHRRFSSLTSDSINPTAAPPTSAPHNNIGLAIDPTHLRRVCTVLYQQQNSSDLRLHSK 77
           F+ + RF    S  + PT   P           I+  HL RVCT+LYQQQNS D RL SK
Sbjct: 22  FILNHRF---FSTELTPTTITP-----------INQDHLLRVCTILYQQQNSPDSRLVSK 81

Query: 78  LRACSFNLSHEFFLQVCNTFPFSWRPVYRFFQFTET-DPNFTHTAVSFNKMIDIVGKSRN 137
           L +  F L+HEFFLQVCN FP SWRPV+RFF +++T  P+FTHT+ + NKM+ I+G SRN
Sbjct: 82  LSSTKFQLTHEFFLQVCNNFPLSWRPVHRFFLYSQTHHPDFTHTSTTSNKMLAIIGNSRN 141

Query: 138 IDLLWDLIQEMGRRRLVTDKTFVVALRTLAAARELKKCVELFHLMNGYGFGYSLVTLNKV 197
           +DL W+L QE+G+R LV DKTF + L+TLA+ARELKKCV  FHLMNG+G+ Y++ T+N+ 
Sbjct: 142 MDLFWELAQEIGKRGLVNDKTFRIVLKTLASARELKKCVNYFHLMNGFGYLYNVETMNRG 201

Query: 198 VEKLCGCKLVDEAKFLVLKLKEWIKADGVTYKLLIMGFCDVGDVIEASKIWNLMVEDGFE 257
           VE LC  KLV+EAKF+ +KLKE+IK D +TY+ +I GFCDVGD+IEA+K+WNLM+++GF+
Sbjct: 202 VETLCKEKLVEEAKFVFIKLKEFIKPDEITYRTMIQGFCDVGDLIEAAKLWNLMMDEGFD 261

Query: 258 AEMEAVEEMMNVLFKANKFDEALKLFQAMRSNRMNDLIPSTYSLVIKWLCNKGKMRQAYN 317
            ++EA +++M  L K N+FDEA K+F  M S R  DL    Y ++I WLC  G++  A  
Sbjct: 262 VDIEAGKKIMETLLKKNQFDEASKVFYVMVSKRGGDLDGGFYRVMIDWLCKNGRIDMARK 321

Query: 318 VFDEMLKRGFEADNSAHSSLIYGVLARGRRREAYNIMGRIENPDLSVYHAMIKGLLRLRS 377
           VFDEM +RG   DN   +SLIYG+L + R  EAY ++  +ENPD+S+YH +IKGL++++ 
Sbjct: 322 VFDEMRERGVYVDNLTWASLIYGLLVKRRVVEAYGLVEGVENPDISIYHGLIKGLVKIKR 381

Query: 378 ASEATQVFRVMIERGCEPIMHTYVMLLQGHLGRRGRKGLDPLVNFDTIFVGGLVKFGKSL 437
           ASEAT+VFR MI+RGCEPIMHTY+MLLQGHLGRRGRKG DPLVNFDTIFVGG++K GK L
Sbjct: 382 ASEATEVFRKMIQRGCEPIMHTYLMLLQGHLGRRGRKGPDPLVNFDTIFVGGMIKAGKRL 441

Query: 438 EATKYVERVMKRGLEVPRFDYNKFLHYYSNEEGVVMFREVGNRLREVGLVDLADIFQRFG 497
           E TKY+ER +KRGLEVPRFDY+KFLHYYSNEEGVVMF E+  +LREV L DLADIFQR+G
Sbjct: 442 ETTKYIERTLKRGLEVPRFDYSKFLHYYSNEEGVVMFEEMAKKLREVSLFDLADIFQRYG 499

Query: 498 EKMSTRDRRRDR 509
           EKM+TR+RRRDR
Sbjct: 502 EKMTTRERRRDR 499

[Close]

BLAST of Carg26683-RA vs. Swiss-Prot
Match: sp|Q3EAF8|PP294_ARATH (Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g62540 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 6.5e-24
Identity = 62/190 (32.63%), Postives = 109/190 (57.37%), Query Frame = 0


Query: 52  DPTHLRRVCTVLYQQQNSSDLRLHSKLRACSFNLSHEFFLQVCNTFPFSWRPVYRFFQFT 111
           +P  + RVC V+  +  + D  + + L     +LSH+  ++V   F  + +P +RFF + 
Sbjct: 127 NPEEVERVCKVI-DELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWA 186

Query: 112 ETDPNFTHTAVSFNKMIDIVGKSRNIDLLWDLIQEMGRRRLVTDKTFVVALRTLAAAREL 171
                F H + ++N M+ I+ K+R  + +  +++EMG + L+T +TF +A++  AAA+E 
Sbjct: 187 AERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKER 246

Query: 172 KKCVELFHLMNGYGFGYSLVTLNKVVEKLCGCKLVDEAKFLVLKLKEWIKADGVTYKLLI 231
           KK V +F LM  Y F   + T+N +++ L   KL  EA+ L  KLKE    + +TY +L+
Sbjct: 247 KKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLL 306

Query: 232 MGFCDVGDVI 242
            G+C V ++I
Sbjct: 307 NGWCRVRNLI 315

[Close]

BLAST of Carg26683-RA vs. Swiss-Prot
Match: sp|Q9LZP3|PP293_ARATH (Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g62470 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 8.4e-24
Identity = 62/190 (32.63%), Postives = 109/190 (57.37%), Query Frame = 0


Query: 52  DPTHLRRVCTVLYQQQNSSDLRLHSKLRACSFNLSHEFFLQVCNTFPFSWRPVYRFFQFT 111
           +P  + RVC V+  +  + D  + + L     +LSH+  ++V   F  + +P +RFF + 
Sbjct: 127 NPEEVERVCKVI-DELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWA 186

Query: 112 ETDPNFTHTAVSFNKMIDIVGKSRNIDLLWDLIQEMGRRRLVTDKTFVVALRTLAAAREL 171
                F H + ++N M+ I+ K+R  + +  +++EMG + L+T +TF +A++  AAA+E 
Sbjct: 187 AERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKER 246

Query: 172 KKCVELFHLMNGYGFGYSLVTLNKVVEKLCGCKLVDEAKFLVLKLKEWIKADGVTYKLLI 231
           KK V +F LM  Y F   + T+N +++ L   KL  EA+ L  KLKE    + +TY +L+
Sbjct: 247 KKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLL 306

Query: 232 MGFCDVGDVI 242
            G+C V ++I
Sbjct: 307 NGWCRVRNLI 315

[Close]

BLAST of Carg26683-RA vs. Swiss-Prot
Match: sp|Q9LEQ7|PP382_ARATH (Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g14820 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 8.4e-24
Identity = 62/190 (32.63%), Postives = 109/190 (57.37%), Query Frame = 0


Query: 52  DPTHLRRVCTVLYQQQNSSDLRLHSKLRACSFNLSHEFFLQVCNTFPFSWRPVYRFFQFT 111
           +P  + RVC V+  +  + D  + + L     +LSH+  ++V   F  + +P +RFF + 
Sbjct: 126 NPEEVERVCKVI-DELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWA 185

Query: 112 ETDPNFTHTAVSFNKMIDIVGKSRNIDLLWDLIQEMGRRRLVTDKTFVVALRTLAAAREL 171
                F H + ++N M+ I+ K+R  + +  +++EMG + L+T +TF +A++  AAA+E 
Sbjct: 186 AERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKER 245

Query: 172 KKCVELFHLMNGYGFGYSLVTLNKVVEKLCGCKLVDEAKFLVLKLKEWIKADGVTYKLLI 231
           KK V +F LM  Y F   + T+N +++ L   KL  EA+ L  KLKE    + +TY +L+
Sbjct: 246 KKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLL 305

Query: 232 MGFCDVGDVI 242
            G+C V ++I
Sbjct: 306 NGWCRVRNLI 314

[Close]

BLAST of Carg26683-RA vs. Swiss-Prot
Match: sp|Q9LUJ4|PP248_ARATH (Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g22670 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 7.4e-20
Identity = 58/197 (29.44%), Postives = 99/197 (50.25%), Query Frame = 0


Query: 58  RVCTVLYQQQNSSDLRLHSKLRACSFNLSHEFFLQVCNTFPFSWRPVYRFFQFTETDPNF 117
           +VC  L ++  S +  +  +L  C   ++    LQV   F   W   Y FF +  +   +
Sbjct: 104 KVCDFLNKKDTSHE-DVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWANSQTGY 163

Query: 118 THTAVSFNKMIDIVGKSRNIDLLWDLIQEMGRR---RLVTDKTFVVALRTLAAARELKKC 177
            H+  ++N M+D++GK RN DL+W+L+ EM +    +LVT  T    +R LA + +  K 
Sbjct: 164 VHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYNKA 223

Query: 178 VELF-HLMNGYGFGYSLVTLNKVVEKLCGCKLVDEAKFLVLKLKEWIKADGVTYKLLIMG 237
           V+ F  +   YG     + +N +++ L     ++ A  + LKL + IK D  T+ +LI G
Sbjct: 224 VDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPDARTFNILIHG 283

Query: 238 FCDVGDVIEASKIWNLM 251
           FC      +A  + +LM
Sbjct: 284 FCKARKFDDARAMMDLM 299

[Close]

BLAST of Carg26683-RA vs. TrEMBL
Match: tr|A0A0A0KD74|A0A0A0KD74_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G366430 PE=4 SV=1)

HSP 1 Score: 858.2 bits (2216), Expect = 9.4e-246
Identity = 425/509 (83.50%), Postives = 458/509 (89.98%), Query Frame = 0


Query: 1   MAVVRYRHIIITKFPFSFVFHRRFSSLTSDSINPTAAPPTSAPHNNIGLAIDPTHLRRVC 60
           MA + YR III  F FSF+FH+RFS  TSDS         S   +NI   ID THLRRVC
Sbjct: 1   MAAITYRRIIINNFSFSFIFHQRFSPFTSDS---------STAADNIPQPIDSTHLRRVC 60

Query: 61  TVLYQQQNSSDLRLHSKLRACSFNLSHEFFLQVCNTFPFSWRPVYRFFQFTETDPNFTHT 120
           TVLYQQQNS DL+LH+KL AC+FNLSHEFFLQVCNTFP SWRPVYRFFQFTET PNFTHT
Sbjct: 61  TVLYQQQNSPDLKLHTKLLACNFNLSHEFFLQVCNTFPLSWRPVYRFFQFTETHPNFTHT 120

Query: 121 AVSFNKMIDIVGKSRNIDLLWDLIQEMGRRRLVTDKTFVVALRTLAAARELKKCVELFHL 180
           AVSFNK+ID+VGKSRNIDLLW LIQEMGRRRLV DKTFVVALRTLA ARELKKCVE FHL
Sbjct: 121 AVSFNKLIDVVGKSRNIDLLWGLIQEMGRRRLVNDKTFVVALRTLATARELKKCVEFFHL 180

Query: 181 MNGYGFGYSLVTLNKVVEKLCGCKLVDEAKFLVLKLKEWIKADGVTYKLLIMGFCDVGDV 240
           MNGYGF YSLVTLN+VVEKLCGCKLVDEAKFLV+KL EWIKADGVTYKLLI GFC+VGD+
Sbjct: 181 MNGYGFCYSLVTLNRVVEKLCGCKLVDEAKFLVMKLNEWIKADGVTYKLLIKGFCNVGDL 240

Query: 241 IEASKIWNLMVEDGFEAEMEAVEEMMNVLFKANKFDEALKLFQAMRSNRMNDLIPSTYSL 300
           IEASK+WNLMV++GFE EMEAVEEMMNVLFK NK DEALKLFQA+RS+RMNDLIPSTYSL
Sbjct: 241 IEASKMWNLMVDEGFEPEMEAVEEMMNVLFKTNKLDEALKLFQALRSDRMNDLIPSTYSL 300

Query: 301 VIKWLCNKGKMRQAYNVFDEMLKRGFEADNSAHSSLIYGVLARGRRREAYNIMGRIENPD 360
           VI+WLCNKGK+ QA+ VFDEM KRG E DNS HSSLIYG+LARGRRREAYNIM RIENPD
Sbjct: 301 VIRWLCNKGKVGQAFIVFDEMHKRGLEVDNSVHSSLIYGLLARGRRREAYNIMRRIENPD 360

Query: 361 LSVYHAMIKGLLRLRSASEATQVFRVMIERGCEPIMHTYVMLLQGHLGRRGRKGLDPLVN 420
           L VYHA IKGLL+L+ A+EATQVFR MIERGCEPIMHTY+MLLQGHLG+RGRKG DPLVN
Sbjct: 361 LDVYHAFIKGLLKLKRANEATQVFREMIERGCEPIMHTYIMLLQGHLGKRGRKGSDPLVN 420

Query: 421 FDTIFVGGLVKFGKSLEATKYVERVMKRGLEVPRFDYNKFLHYYSNEEGVVMFREVGNRL 480
           FD+IFVGGLVK GKSLEATKYVER+MKRGLEVPRFDYNKFLHYYSNEEGVVMFREVGN+L
Sbjct: 421 FDSIFVGGLVKNGKSLEATKYVERLMKRGLEVPRFDYNKFLHYYSNEEGVVMFREVGNKL 480

Query: 481 REVGLVDLADIFQRFGEKMSTRDRRRDRA 510
           REVGLVDLADIFQR+GEKM+TRDRRR+RA
Sbjct: 481 REVGLVDLADIFQRYGEKMTTRDRRRNRA 500

[Close]

BLAST of Carg26683-RA vs. TrEMBL
Match: tr|A0A1S3BDH4|A0A1S3BDH4_CUCME (putative pentatricopeptide repeat-containing protein At1g26500 OS=Cucumis melo OX=3656 GN=LOC103488475 PE=4 SV=1)

HSP 1 Score: 822.0 bits (2122), Expect = 7.5e-235
Identity = 411/509 (80.75%), Postives = 441/509 (86.64%), Query Frame = 0


Query: 1   MAVVRYRHIIITKFPFSFVFHRRFSSLTSDSINPTAAPPTSAPHNNIGLAIDPTHLRRVC 60
           MA + YR III  F FSF+FH+RFS  TSDS   TAA       +NI  AID THLRRVC
Sbjct: 1   MAAITYRRIIINNFSFSFIFHQRFSPFTSDS---TAA-------DNIPSAIDSTHLRRVC 60

Query: 61  TVLYQQQNSSDLRLHSKLRACSFNLSHEFFLQVCNTFPFSWRPVYRFFQFTETDPNFTHT 120
           TVLYQQQNS D++LH+KL AC+FNLSHEFFLQVCNTFP SWRPVYRFFQFTET PNFTHT
Sbjct: 61  TVLYQQQNSPDIKLHTKLLACNFNLSHEFFLQVCNTFPLSWRPVYRFFQFTETHPNFTHT 120

Query: 121 AVSFNKMIDIVGKSRNIDLLWDLIQEMGRRRLVTDKTFVVALRTLAAARELKKCVELFHL 180
            VSFNK+ID+VGKSRNIDLLW LIQEMGRRRLV DKTFVVALRTLA ARELKKCVE FHL
Sbjct: 121 VVSFNKLIDVVGKSRNIDLLWGLIQEMGRRRLVNDKTFVVALRTLATARELKKCVEFFHL 180

Query: 181 MNGYGFGYSLVTLNKVVEKLCGCKLVDEAKFLVLKLKEWIKADGVTYKLLIMGFCDVGDV 240
           MNGYGF YSLVTLNKVVE LCGCKLVDEAKFLV+KL EWIKADGVTYKLLI GFC+VGD+
Sbjct: 181 MNGYGFCYSLVTLNKVVENLCGCKLVDEAKFLVMKLNEWIKADGVTYKLLIKGFCNVGDL 240

Query: 241 IEASKIWNLMVEDGFEAEMEAVEEMMNVLFKANKFDEALKLFQAMRSNRMNDLIPSTYSL 300
           IEASK+WNLMV++GFE EMEAVEEM+NVLFK NK DEALKLFQA+RSNRMNDLIPSTY L
Sbjct: 241 IEASKMWNLMVDEGFEPEMEAVEEMVNVLFKTNKLDEALKLFQAVRSNRMNDLIPSTYRL 300

Query: 301 VIKWLCNKGKMRQAYNVFDEMLKRGFEADNSAHSSLIYGVLARGRRREAYNIMGRIENPD 360
           VI+WLCNKGK+RQA+ VFDEM KRG E DNS HSSLIYG+LARGRRREAYNIM RIENPD
Sbjct: 301 VIRWLCNKGKVRQAFIVFDEMHKRGLEVDNSVHSSLIYGLLARGRRREAYNIMRRIENPD 360

Query: 361 LSVYHAMIKGLLRLRSASEATQVFRVMIERGCEPIMHTYVMLLQGHLGRRGRKGLDPLVN 420
           L                     VFR MIERGCEPIMHTY+MLLQGHLG+RGRKGLDP VN
Sbjct: 361 LDXXXXXXXXXXXXXXXXXXXXVFREMIERGCEPIMHTYIMLLQGHLGKRGRKGLDPFVN 420

Query: 421 FDTIFVGGLVKFGKSLEATKYVERVMKRGLEVPRFDYNKFLHYYSNEEGVVMFREVGNRL 480
           FD+IFVGGLVK GKSLEATKYVER+MKRGLEVPRFDYNKFLHYYSN+EGVVMFREVGNRL
Sbjct: 421 FDSIFVGGLVKNGKSLEATKYVERIMKRGLEVPRFDYNKFLHYYSNDEGVVMFREVGNRL 480

Query: 481 REVGLVDLADIFQRFGEKMSTRDRRRDRA 510
           REVGLVDLADIFQR+GEKM+TRDRRR+RA
Sbjct: 481 REVGLVDLADIFQRYGEKMTTRDRRRNRA 499

[Close]

BLAST of Carg26683-RA vs. TrEMBL
Match: tr|A0A2P5E2A3|A0A2P5E2A3_PARAD (Pentatricopeptide repeat OS=Parasponia andersonii OX=3476 GN=PanWU01x14_008950 PE=4 SV=1)

HSP 1 Score: 711.4 bits (1835), Expect = 1.4e-201
Identity = 348/487 (71.46%), Postives = 410/487 (84.19%), Query Frame = 0


Query: 23  RFSSLTSDSINPTAAPPTSAPHNNIGLAIDPTHLRRVCTVLYQQQNSSDLRLHSKLRACS 82
           RFS  T++S +P  A  +S+        ++P HL RVCT+LYQQQNS + RLHS LRA  
Sbjct: 22  RFS--TTESTHPQLASFSSSS------PVNPAHLLRVCTILYQQQNSPEPRLHSSLRASE 81

Query: 83  FNLSHEFFLQVCNTFPFSWRPVYRFFQFTETDPNFTHTAVSFNKMIDIVGKSRNIDLLWD 142
           F L+HEFFLQVCN+FP+SWRPVYRFF+FT++DP+F H++VSFNKM+D++G+SRNIDL W 
Sbjct: 82  FQLTHEFFLQVCNSFPYSWRPVYRFFEFTQSDPHFRHSSVSFNKMLDVIGRSRNIDLFWG 141

Query: 143 LIQEMGRRRLVTDKTFVVALRTLAAARELKKCVELFHLMNGYGFGYSLVTLNKVVEKLCG 202
           ++ EMGRRRLV DK+F +ALRTLA AREL KCVELFH MNGYGFGYSL +LNK VE LCG
Sbjct: 142 VLNEMGRRRLVNDKSFRIALRTLAGARELNKCVELFHAMNGYGFGYSLGSLNKGVETLCG 201

Query: 203 CKLVDEAKFLVLKLKEWIKADGVTYKLLIMGFCDVGDVIEASKIWNLMVEDGFEAEMEAV 262
            +LVDEAKFLV KLK+WI+ DGVTY+ LI GFCDVG++IEASK+WNLMV++GFE E++AV
Sbjct: 202 NRLVDEAKFLVFKLKDWIRPDGVTYRCLIQGFCDVGNLIEASKMWNLMVDEGFEPEIDAV 261

Query: 263 EEMMNVLFKANKFDEALKLFQAMRSNRMNDLIPSTYSLVIKWLCNKGKMRQAYNVFDEML 322
           E+MM  LFK N++DEALKLFQAMR  RM DL  STY LVI+W+C + K+ QAY VF+EM 
Sbjct: 262 EKMMETLFKMNRYDEALKLFQAMRFKRMGDLGLSTYRLVIRWMCKRDKVSQAYVVFEEMH 321

Query: 323 KRGFEADNSAHSSLIYGVLARGRRREAYNIMGRIENPDLSVYHAMIKGLLRLRSASEATQ 382
           KR  +ADN    SL+YG+LARGR  EAY ++  IE PD+SV+H +IKGLLRLR ASEATQ
Sbjct: 322 KRRIQADNLTLGSLVYGLLARGRVSEAYKVVEGIEKPDISVFHGLIKGLLRLRRASEATQ 381

Query: 383 VFRVMIERGCEPIMHTYVMLLQGHLGRRGRKGLDPLVNFDTIFVGGLVKFGKSLEATKYV 442
           VFR MI RGCEPIMHTY+MLLQGHLG+RGRKG DPLVNFDTIFVGGLVK GK LEAT+YV
Sbjct: 382 VFREMINRGCEPIMHTYIMLLQGHLGKRGRKGSDPLVNFDTIFVGGLVKAGKLLEATEYV 441

Query: 443 ERVMKRGLEVPRFDYNKFLHYYSNEEGVVMFREVGNRLREVGLVDLADIFQRFGEKMSTR 502
           ER MKRGLEVPRFDYNKFLH+YSNEEGVVMF EVG +LREVGLVDLADIFQR+GEKM+TR
Sbjct: 442 ERTMKRGLEVPRFDYNKFLHHYSNEEGVVMFEEVGKKLREVGLVDLADIFQRYGEKMATR 500

Query: 503 DRRRDRA 510
           DRRR+RA
Sbjct: 502 DRRRNRA 500

[Close]

BLAST of Carg26683-RA vs. TrEMBL
Match: tr|A0A2P5CUF4|A0A2P5CUF4_9ROSA (Pentatricopeptide repeat OS=Trema orientalis OX=63057 GN=TorRG33x02_272750 PE=4 SV=1)

HSP 1 Score: 710.7 bits (1833), Expect = 2.4e-201
Identity = 343/470 (72.98%), Postives = 397/470 (84.47%), Query Frame = 0


Query: 40  TSAPHNNIGLAIDPTHLRRVCTVLYQQQNSSDLRLHSKLRACSFNLSHEFFLQVCNTFPF 99
           T + H  +   ++P HL RVCT+LYQQQNS + RLHS LRA  F L+HEFFLQVCN+FP+
Sbjct: 25  TESTHPQLA-TVNPAHLLRVCTILYQQQNSPEPRLHSSLRASEFQLTHEFFLQVCNSFPY 84

Query: 100 SWRPVYRFFQFTETDPNFTHTAVSFNKMIDIVGKSRNIDLLWDLIQEMGRRRLVTDKTFV 159
           SWRPVYRFF+FT++DP F H+ VSFNKM+D++G+SRNIDL W ++ EMGRRRLV DK+F 
Sbjct: 85  SWRPVYRFFEFTQSDPQFRHSYVSFNKMLDVIGRSRNIDLFWGVLHEMGRRRLVNDKSFR 144

Query: 160 VALRTLAAARELKKCVELFHLMNGYGFGYSLVTLNKVVEKLCGCKLVDEAKFLVLKLKEW 219
           +ALRTLA AREL KCVELFH MNGYGFGYSL +LNK VE LCG +LVDEAKFLV KLK+W
Sbjct: 145 IALRTLAGARELNKCVELFHAMNGYGFGYSLGSLNKGVETLCGSRLVDEAKFLVFKLKDW 204

Query: 220 IKADGVTYKLLIMGFCDVGDVIEASKIWNLMVEDGFEAEMEAVEEMMNVLFKANKFDEAL 279
           I+ DGVTY+ LI GFCDVG++IE SK+WNLMV++GFE E++AVE+MM  LFK N++DEAL
Sbjct: 205 IRPDGVTYRCLIQGFCDVGNLIEGSKMWNLMVDEGFEPEIDAVEKMMETLFKTNRYDEAL 264

Query: 280 KLFQAMRSNRMNDLIPSTYSLVIKWLCNKGKMRQAYNVFDEMLKRGFEADNSAHSSLIYG 339
           KLFQAMR  RM DL  STY LVI W+C + K+ QAY VF+EM KR  +ADN    SL+YG
Sbjct: 265 KLFQAMRFKRMGDLGLSTYRLVIHWMCKRDKVSQAYVVFEEMHKRRIQADNLTLGSLVYG 324

Query: 340 VLARGRRREAYNIMGRIENPDLSVYHAMIKGLLRLRSASEATQVFRVMIERGCEPIMHTY 399
           +LARGR  EAY ++  IE PD+SVYH +IKGLLRLR ASEATQVFR MI RGCEPIMHTY
Sbjct: 325 LLARGRVSEAYKVVEGIEKPDISVYHGLIKGLLRLRRASEATQVFREMINRGCEPIMHTY 384

Query: 400 VMLLQGHLGRRGRKGLDPLVNFDTIFVGGLVKFGKSLEATKYVERVMKRGLEVPRFDYNK 459
           +MLLQGHLG+RGRKG DPLVNFDTIFVGGLVK GK LEATKYVER MKRGLEVPRFDYNK
Sbjct: 385 IMLLQGHLGKRGRKGSDPLVNFDTIFVGGLVKAGKLLEATKYVERTMKRGLEVPRFDYNK 444

Query: 460 FLHYYSNEEGVVMFREVGNRLREVGLVDLADIFQRFGEKMSTRDRRRDRA 510
           FLH+YSNEEGVVMF EVG +LREVGLVDLADIFQR+GEKM+TRDRRR+RA
Sbjct: 445 FLHHYSNEEGVVMFEEVGKKLREVGLVDLADIFQRYGEKMATRDRRRNRA 493

[Close]

BLAST of Carg26683-RA vs. TrEMBL
Match: tr|A0A251R4P6|A0A251R4P6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G285700 PE=4 SV=1)

HSP 1 Score: 696.0 bits (1795), Expect = 6.2e-197
Identity = 341/492 (69.31%), Postives = 403/492 (81.91%), Query Frame = 0


Query: 19  VFHRRFSSLTSDSINPTAAPPTSAPHNNIGL--AIDPTHLRRVCTVLYQQQNSSDLRLHS 78
           +  +R SSLT   IN      T +    +     ++P HL RVCT+LYQQQNS + RLHS
Sbjct: 1   MIRQRSSSLTKPLINLFRFITTESTQTQLATPSPVNPAHLLRVCTILYQQQNSPESRLHS 60

Query: 79  KLRACSFNLSHEFFLQVCNTFPFSWRPVYRFFQFTETDPNFTHTAVSFNKMIDIVGKSRN 138
            L + +F L+HEFFLQVCN+FP SWRPVY FF +T+T PNFTHT VSFNKM+D++GK+RN
Sbjct: 61  NLNSSNFQLTHEFFLQVCNSFPLSWRPVYLFFLYTQTHPNFTHTTVSFNKMVDVIGKARN 120

Query: 139 IDLLWDLIQEMGRRRLVTDKTFVVALRTLAAARELKKCVELFHLMNGYGFGYSLVTLNKV 198
           I LLWD++ EMGRRRLV DKTF++AL+TLA AREL KCVE FH+MNGYGF YSL TLNKV
Sbjct: 121 IQLLWDMLHEMGRRRLVNDKTFLIALKTLAKARELNKCVEFFHVMNGYGFDYSLETLNKV 180

Query: 199 VEKLCGCKLVDEAKFLVLKLKEWIKADGVTYKLLIMGFCDVGDVIEASKIWNLMVEDGFE 258
           VE LCG KLV EAKF+V KLKE I  +GVTY+ LI GFCDVGD+IEASKIWNLMV++GF+
Sbjct: 181 VESLCGSKLVVEAKFIVFKLKESIGPNGVTYRCLIEGFCDVGDLIEASKIWNLMVDEGFD 240

Query: 259 AEMEAVEEMMNVLFKANKFDEALKLFQAMRSNRMNDLIPSTYSLVIKWLCNKGKMRQAYN 318
            ++ A+E+MM  LFK N++ EALK+FQ MR NRM+DL  STY LVI+W+C  GK+ +A+ 
Sbjct: 241 PDIGAIEKMMETLFKTNRYGEALKVFQMMRVNRMDDLGLSTYRLVIEWMCKSGKIEEAHV 300

Query: 319 VFDEMLKRGFEADNSAHSSLIYGVLARGRRREAYNIMGRIENPDLSVYHAMIKGLLRLRS 378
           VF+EM KR  EADNS  +SL+YG+LARGR R AY I+  IE PD++V+H MIKGLLRLR 
Sbjct: 301 VFEEMQKRRIEADNSTLASLVYGLLARGRVRVAYKIVEGIEKPDINVFHGMIKGLLRLRK 360

Query: 379 ASEATQVFRVMIERGCEPIMHTYVMLLQGHLGRRGRKGLDPLVNFDTIFVGGLVKFGKSL 438
             EAT+VFR MI++GCEP MHTY+MLLQGHLG+RGRKG DPLVNFDTIFVGGLVK GKSL
Sbjct: 361 LREATEVFREMIKKGCEPNMHTYIMLLQGHLGKRGRKGSDPLVNFDTIFVGGLVKAGKSL 420

Query: 439 EATKYVERVMKRGLEVPRFDYNKFLHYYSNEEGVVMFREVGNRLREVGLVDLADIFQRFG 498
           EATKYVERV+KRGLEVPRFDYNKFLHYYSNEEGV MF EVG +LREVGLVDLADIFQR+G
Sbjct: 421 EATKYVERVIKRGLEVPRFDYNKFLHYYSNEEGVGMFEEVGKKLREVGLVDLADIFQRYG 480

Query: 499 EKMSTRDRRRDR 509
           EKM+TRDRRR+R
Sbjct: 481 EKMATRDRRRNR 492

The following BLAST results are available for this feature:

BLAST of Carg26683-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538207.1	9.1e-293	98.44	putative pentatricopeptide repeat-containing protein At1g26500 [Cucurbita pepo s...	[more]
XP_022951803.1	1.5e-292	98.06	putative pentatricopeptide repeat-containing protein At1g26500 isoform X2 [Cucur...	[more]
XP_022951802.1	2.2e-291	98.05	putative pentatricopeptide repeat-containing protein At1g26500 isoform X1 [Cucur...	[more]
XP_023002788.1	2.8e-286	96.30	putative pentatricopeptide repeat-containing protein At1g26500 [Cucurbita maxima...	[more]
XP_022131400.1	9.8e-247	83.88	putative pentatricopeptide repeat-containing protein At1g26500 [Momordica charan...	[more]

BLAST of Carg26683-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G26500.1	2.5e-175	60.57	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G62540.1	3.6e-25	32.63	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G62470.1	4.7e-25	32.63	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G14820.1	4.7e-25	32.63	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G22670.1	4.1e-21	29.44	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Carg26683-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FZD4\|PPR59_ARATH	4.4e-174	60.57	Putative pentatricopeptide repeat-containing protein At1g26500 OS=Arabidopsis th...	[more]
sp\|Q3EAF8\|PP294_ARATH	6.5e-24	32.63	Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidop...	[more]
sp\|Q9LZP3\|PP293_ARATH	8.4e-24	32.63	Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidop...	[more]
sp\|Q9LEQ7\|PP382_ARATH	8.4e-24	32.63	Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidop...	[more]
sp\|Q9LUJ4\|PP248_ARATH	7.4e-20	29.44	Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidop...	[more]

BLAST of Carg26683-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KD74\|A0A0A0KD74_CUCSA	9.4e-246	83.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G366430 PE=4 SV=1	[more]
tr\|A0A1S3BDH4\|A0A1S3BDH4_CUCME	7.5e-235	80.75	putative pentatricopeptide repeat-containing protein At1g26500 OS=Cucumis melo O...	[more]
tr\|A0A2P5E2A3\|A0A2P5E2A3_PARAD	1.4e-201	71.46	Pentatricopeptide repeat OS=Parasponia andersonii OX=3476 GN=PanWU01x14_008950 P...	[more]
tr\|A0A2P5CUF4\|A0A2P5CUF4_9ROSA	2.4e-201	72.98	Pentatricopeptide repeat OS=Trema orientalis OX=63057 GN=TorRG33x02_272750 PE=4 ...	[more]
tr\|A0A251R4P6\|A0A251R4P6_PRUPE	6.2e-197	69.31	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G285700 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg26683	Carg26683	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26683-RA.exon.1	Carg26683-RA.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26683-RA.CDS.1	Carg26683-RA.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg26683-RA	Carg26683-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 225..255 e-value: 1.6E-5 score: 24.7 coord: 265..288 e-value: 0.0026 score: 17.8
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 359..405 e-value: 1.5E-7 score: 31.4 coord: 297..339 e-value: 7.9E-11 score: 41.9
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 297..329 e-value: 1.6E-7 score: 29.1 coord: 265..289 e-value: 2.3E-4 score: 19.1 coord: 363..394 e-value: 3.6E-6 score: 24.8 coord: 225..256 e-value: 5.2E-5 score: 21.2
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 418..452 score: 5.152
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 120..154 score: 7.837
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 189..219 score: 6.018
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 329..359 score: 5.327
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 223..257 score: 10.501
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 258..292 score: 7.706
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 294..328 score: 10.928
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 360..394 score: 11.608
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 309..416 e-value: 2.0E-17 score: 65.7
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 116..308 e-value: 1.4E-27 score: 98.9
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 34..507
None	No IPR available	PANTHER	PTHR24015:SF584	SUBFAMILY NOT NAMED	coord: 34..507