Carg26481-RA (mRNA) Silver-seed gourd

Overview
NameCarg26481-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_381 : 128737 .. 129549 (+)
Sequence length620
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGTCTTTAACACCATTTTGACATGGTGAAAGCAGCTAGCAAATGGAAGTTAACGTTGCCCCCATTGTCAAGTTGGACAAGTCTTAGTCAATGCCATACTGGCTCCAAGCTACTAGTGGGCATAAATGATCAAACTTGGGACTGATCATGGCTTGATTGTTACCTCCTCCATCACAAGGAGTGGAATCTGTTTGAGAATAATATGTGCACTCCGAATCCTTATCAAGTATCGCCCTACTCCGACCCTTCTTCACATGAAAGTAATATCAATAACGATTCCTCGGGATTGTTCTGCTACATAGAAAGATTCAATCCTCTTTGACTGTCCCCATGAGTGAATGTGAACATGCATTTTTTTCATTTAGTTCCCAAAGGCTGATAAGAAAGGATGCGTGTTCAATCGTTAAGATGCTATACATGGCTTTCGTGTTCATTGCAGCCTTGCAGGTTGGAAGAAACGGACGAGAATCTTCAACTTTATGGAGAAGAGAAGAATCACACCGCCCCAGTCGAGAAGAATCGCGCTCGTGGGCATGGCCCAGGGATTCTACTCTTCTTTCACTGGTATGATCATTGACTTGGTGTAATGTGAAAACATTTCAGTCATTTCCTGAATTATATTAGTGAGAAGTTAAGCATTCTATATCACTTTTCCATGGCAAAGTTGTCATCTGTGAAGTTTTTTGCATCATAAAGTTCTGAGTTATATTTATGCTCTTCATCTGGCTTGGATTAACAATCACTAAAACTGACACAGGACAAAATTGATTGCTTATTGTTCGTCCAGGTTTGTCCCTATGAATGATCGTTGA

mRNA sequence

TTTGTCTTTAACACCATTTTGACATGGTGAAAGCAGCTAGCAAATGGAAGTTAACGTTGCCCCCATTGTCAAGTTGGACAAGTCTTAGTCAATGCCATACTGGCTCCAAGCTACTAGTGGGCATAAATGATCAAACTTGGGACTGATCATGGCTTGATTGTTACCTCCTCCATCACAAGGAGTGGAATCTGTTTGAGAATAATATGTGCACTCCGAATCCTTATCAAGTATCGCCCTACTCCGACCCTTCTTCACATGAAAGTAATATCAATAACGATTCCTCGGGATTGTTCTGCTACATAGAAAGATTCAATCCTCTTTGACTGTCCCCATGAGTGAATGTGAACATGCATTTTTTTCATTTAGTTCCCAAAGGCTGATAAGAAAGGATGCGTGTTCAATCGTTAAGATGCTATACATGGCTTTCGTGTTCATTGCAGCCTTGCAGGTTGGAAGAAACGGACGAGAATCTTCAACTTTATGGAGAAGAGAAGAATCACACCGCCCCAGTCGAGAAGAATCGCGCTCGTGGGCATGGCCCAGGGATTCTACTCTTCTTTCACTGGACAAAATTGATTGCTTATTGTTCGTCCAGGTTTGTCCCTATGAATGATCGTTGA

Coding sequence (CDS)

ATGCGTGTTCAATCGTTAAGATGCTATACATGGCTTTCGTGTTCATTGCAGCCTTGCAGGTTGGAAGAAACGGACGAGAATCTTCAACTTTATGGAGAAGAGAAGAATCACACCGCCCCAGTCGAGAAGAATCGCGCTCGTGGGCATGGCCCAGGGATTCTACTCTTCTTTCACTGGACAAAATTGATTGCTTATTGTTCGTCCAGGTTTGTCCCTATGAATGATCGTTGA

Protein sequence

MRVQSLRCYTWLSCSLQPCRLEETDENLQLYGEEKNHTAPVEKNRARGHGPGILLFFHWTKLIAYCSSRFVPMNDR
Homology
[Close]
BLAST of Carg26481-RA vs. NCBI nr
Match: XP_008460936.1 (PREDICTED: uncharacterized protein LOC103499672 isoform X1 [Cucumis melo])

HSP 1 Score: 53.5 bits (127), Expect = 3.6e-04
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 9  YTWLSCSLQPCRLEETDENLQLYGEEKNHTAP 41
          + WLS SLQPCRLEET++NL+ YG+EKN T P
Sbjct: 59 HLWLSYSLQPCRLEETNKNLEFYGDEKNRTIP 90

[Close]
BLAST of Carg26481-RA vs. NCBI nr
Match: XP_008460937.1 (PREDICTED: uncharacterized protein LOC103499672 isoform X2 [Cucumis melo])

HSP 1 Score: 53.5 bits (127), Expect = 3.6e-04
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 9  YTWLSCSLQPCRLEETDENLQLYGEEKNHTAP 41
          + WLS SLQPCRLEET++NL+ YG+EKN T P
Sbjct: 47 HLWLSYSLQPCRLEETNKNLEFYGDEKNRTIP 78

[Close]
BLAST of Carg26481-RA vs. TrEMBL
Match: tr|A0A1S3CD32|A0A1S3CD32_CUCME (uncharacterized protein LOC103499672 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499672 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.4e-04
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 9  YTWLSCSLQPCRLEETDENLQLYGEEKNHTAP 41
          + WLS SLQPCRLEET++NL+ YG+EKN T P
Sbjct: 47 HLWLSYSLQPCRLEETNKNLEFYGDEKNRTIP 78

[Close]
BLAST of Carg26481-RA vs. TrEMBL
Match: tr|A0A1S3CES9|A0A1S3CES9_CUCME (uncharacterized protein LOC103499672 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499672 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.4e-04
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 9  YTWLSCSLQPCRLEETDENLQLYGEEKNHTAP 41
          + WLS SLQPCRLEET++NL+ YG+EKN T P
Sbjct: 59 HLWLSYSLQPCRLEETNKNLEFYGDEKNRTIP 90

The following BLAST results are available for this feature:
BLAST of Carg26481-RA vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008460936.13.6e-0468.75PREDICTED: uncharacterized protein LOC103499672 isoform X1 [Cucumis melo][more]
XP_008460937.13.6e-0468.75PREDICTED: uncharacterized protein LOC103499672 isoform X2 [Cucumis melo][more]
BLAST of Carg26481-RA vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg26481-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg26481-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CD32|A0A1S3CD32_CUCME2.4e-0468.75uncharacterized protein LOC103499672 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3CES9|A0A1S3CES9_CUCME2.4e-0468.75uncharacterized protein LOC103499672 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg26481Carg26481gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg26481-RA.exon.1Carg26481-RA.exon.1exon
Carg26481-RA.exon.2Carg26481-RA.exon.2exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg26481-RA.five_prime_UTR.1Carg26481-RA.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg26481-RA.CDS.1Carg26481-RA.CDS.1CDS
Carg26481-RA.CDS.2Carg26481-RA.CDS.2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg26481-RACarg26481-RA-proteinpolypeptide