Carg26440-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26440-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RING zinc finger protein-like
Location	Cucurbita_argyrosperma_scaffold_094 : 376473 .. 377222 (-)
Sequence length	750

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAAGCTGGCATCGAACGCCTTCGCTGGCATTCGATCTAAGAATAACTCTGCTGTATCTAAGCAAGCTTTCTGGGAGTGCTCGGACGACGAGGTGTGCTCGGAAGACAGTAGAGATGAAGAATTGGAATGCCCAATATGCTGGGAATCTTTCAACATTGTGGAGAATGTGCCTTATGTCTTATGGTGTGGCCATACATTATGCAGAAATTGTGTATTAGGCCTTCAAGGGTATGTGCTGAAACTAGCAACTCGCCAAATCCGAATCCCTATCTTCATATCGTGCCCGTGGTGTCATCAGCTTTCCTTACGGGTCGTATACAAGGGGAACCTGAAGTTTCCCAGCAAGAACTTTTTTCTTCTTTGGATGGTTGAGAGCCTCAATGGCAATGAGGGAAAACTTGATCACCCCTTCAATGGGGATAATCAACCAGTTTTTTCTCTGCCTCCATCCGACGCCAATGCTTCTCAGAGGCATTCGTTTTCGGACGGTCGTGTTAGTCGCCACGGAATAGAGAGGCGACGACGGCTGTTTTCCTATGAACATTTAGATTGCGTCATCCATTTAATCTTCAAGTTTCTACTGGCTGTCATATTTGTTCTGATAGTAGTTTTTGTAATCCCTGGAAGTGCACTCATCTTGCTGCTTTACTTGCTAATAACTTTCCTTTTTGCATTGCCATCTTTGCTGATATTTTACATTTCACTCCATGCTTTGGAAAAGCTTATGAATGATATAACTTCATGA

mRNA sequence

ATGTGGAAGCTGGCATCGAACGCCTTCGCTGGCATTCGATCTAAGAATAACTCTGCTGTATCTAAGCAAGCTTTCTGGGAGTGCTCGGACGACGAGGTGTGCTCGGAAGACAGTAGAGATGAAGAATTGGAATGCCCAATATGCTGGGAATCTTTCAACATTGTGGAGAATGTGCCTTATGTCTTATGGTGTGGCCATACATTATGCAGAAATTGTGTATTAGGCCTTCAAGGGTATGTGCTGAAACTAGCAACTCGCCAAATCCGAATCCCTATCTTCATATCGTGCCCGTGGTGTCATCAGCTTTCCTTACGGGTCGTATACAAGGGGAACCTGAAGTTTCCCAGCAAGAACTTTTTTCTTCTTTGGATGGTTGAGAGCCTCAATGGCAATGAGGGAAAACTTGATCACCCCTTCAATGGGGATAATCAACCAGTTTTTTCTCTGCCTCCATCCGACGCCAATGCTTCTCAGAGGCATTCGTTTTCGGACGGTCGTGTTAGTCGCCACGGAATAGAGAGGCGACGACGGCTGTTTTCCTATGAACATTTAGATTGCGTCATCCATTTAATCTTCAAGTTTCTACTGGCTGTCATATTTGTTCTGATAGTAGTTTTTGTAATCCCTGGAAGTGCACTCATCTTGCTGCTTTACTTGCTAATAACTTTCCTTTTTGCATTGCCATCTTTGCTGATATTTTACATTTCACTCCATGCTTTGGAAAAGCTTATGAATGATATAACTTCATGA

Coding sequence (CDS)

ATGTGGAAGCTGGCATCGAACGCCTTCGCTGGCATTCGATCTAAGAATAACTCTGCTGTATCTAAGCAAGCTTTCTGGGAGTGCTCGGACGACGAGGTGTGCTCGGAAGACAGTAGAGATGAAGAATTGGAATGCCCAATATGCTGGGAATCTTTCAACATTGTGGAGAATGTGCCTTATGTCTTATGGTGTGGCCATACATTATGCAGAAATTGTGTATTAGGCCTTCAAGGGTATGTGCTGAAACTAGCAACTCGCCAAATCCGAATCCCTATCTTCATATCGTGCCCGTGGTGTCATCAGCTTTCCTTACGGGTCGTATACAAGGGGAACCTGAAGTTTCCCAGCAAGAACTTTTTTCTTCTTTGGATGGTTGAGAGCCTCAATGGCAATGAGGGAAAACTTGATCACCCCTTCAATGGGGATAATCAACCAGTTTTTTCTCTGCCTCCATCCGACGCCAATGCTTCTCAGAGGCATTCGTTTTCGGACGGTCGTGTTAGTCGCCACGGAATAGAGAGGCGACGACGGCTGTTTTCCTATGAACATTTAGATTGCGTCATCCATTTAATCTTCAAGTTTCTACTGGCTGTCATATTTGTTCTGATAGTAGTTTTTGTAATCCCTGGAAGTGCACTCATCTTGCTGCTTTACTTGCTAATAACTTTCCTTTTTGCATTGCCATCTTTGCTGATATTTTACATTTCACTCCATGCTTTGGAAAAGCTTATGAATGATATAACTTCATGA

Protein sequence

MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPYVLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFFLLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDANASQRHSFSDGRVSRHGIERRRRLFSYEHLDCVIHLIFKFLLAVIFVLIVVFVIPGSALILLLYLLITFLFALPSLLIFYISLHALEKLMNDITS

Homology

[Close]

BLAST of Carg26440-RA vs. NCBI nr
Match: XP_022946373.1 (uncharacterized protein LOC111450453 [Cucurbita moschata])

HSP 1 Score: 486.1 bits (1250), Expect = 7.1e-134
Identity = 247/249 (99.20%), Postives = 249/249 (100.00%), Query Frame = 0


Query: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60
           MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY
Sbjct: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60

Query: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF
Sbjct: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120

Query: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDANASQRHSFSDGRVSRHGIERRRRLFS 180
           LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDA+ASQRHSFSDGRVSRHGIERRRRLFS
Sbjct: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDADASQRHSFSDGRVSRHGIERRRRLFS 180

Query: 181 YEHLDCVIHLIFKFLLAVIFVLXXXXXIPGSALILLLYLLITFLFALPSLLIFYISLHAL 240
           YEHLDCVIHLIFKFLLAVIFVLXXXXXIPGSALILLLYLLITFLFALPSLLIFYISLHAL
Sbjct: 181 YEHLDCVIHLIFKFLLAVIFVLXXXXXIPGSALILLLYLLITFLFALPSLLIFYISLHAL 240

Query: 241 EKLMNDITS 250
           EKLMNDI+S
Sbjct: 241 EKLMNDISS 249

[Close]

BLAST of Carg26440-RA vs. NCBI nr
Match: XP_022999337.1 (uncharacterized protein LOC111493743 [Cucurbita maxima])

HSP 1 Score: 461.5 bits (1186), Expect = 1.9e-126
Identity = 235/249 (94.38%), Postives = 238/249 (95.58%), Query Frame = 0


Query: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60
           MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY
Sbjct: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60

Query: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF
Sbjct: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120

Query: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDANASQRHSFSDGRVSRHGIERRRRLFS 180
           LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDA+ASQRHSFSDGRV+RHGIERR  LFS
Sbjct: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDADASQRHSFSDGRVNRHGIERRPWLFS 180

Query: 181 YEHLDCVIHLIFKFLLAVIFVLXXXXXIPGSALILLLYLLITFLFALPSLLIFYISLHAL 240
           YEHLDC+IHLIFKF        XXXXX PGSALILLLYLLITFLFALPSLLIFYISLHAL
Sbjct: 181 YEHLDCLIHLIFKFXXXXXXXXXXXXXXPGSALILLLYLLITFLFALPSLLIFYISLHAL 240

Query: 241 EKLMNDITS 250
           EKLMNDITS
Sbjct: 241 EKLMNDITS 249

[Close]

BLAST of Carg26440-RA vs. NCBI nr
Match: XP_023547098.1 (uncharacterized protein LOC111806010 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 435.3 bits (1118), Expect = 1.4e-118
Identity = 225/249 (90.36%), Postives = 226/249 (90.76%), Query Frame = 0


Query: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60
           MWKLASNAFAGI+SKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY
Sbjct: 1   MWKLASNAFAGIQSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60

Query: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFI CPWCHQLSLRVVYKGNLKFPSKNFF
Sbjct: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFIPCPWCHQLSLRVVYKGNLKFPSKNFF 120

Query: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDANASQRHSFSDGRVSRHGIERRRRLFS 180
           LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDANASQRHSFSDGRVSRHGIERRRRLF 
Sbjct: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDANASQRHSFSDGRVSRHGIERRRRLFC 180

Query: 181 YEHLDCVIHLIFKFLLAVIFVLXXXXXIPGSALILLLYLLITFLFALPSLLIFYISLHAL 240
           YE                    XXXXX PGSALILLLYLLITFLFALPSLLIFYISLHAL
Sbjct: 181 YEXXXXXXXXXXXXXXXXXXXXXXXXXXPGSALILLLYLLITFLFALPSLLIFYISLHAL 240

Query: 241 EKLMNDITS 250
           EKLMNDITS
Sbjct: 241 EKLMNDITS 249

[Close]

BLAST of Carg26440-RA vs. NCBI nr
Match: XP_008465708.1 (PREDICTED: uncharacterized protein LOC103503329 [Cucumis melo] >XP_008465709.1 PREDICTED: uncharacterized protein LOC103503329 [Cucumis melo] >XP_008465710.1 PREDICTED: uncharacterized protein LOC103503329 [Cucumis melo])

HSP 1 Score: 360.5 bits (924), Expect = 4.5e-96
Identity = 192/249 (77.11%), Postives = 200/249 (80.32%), Query Frame = 0


Query: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60
           MWKLASNA AGIRSK NS V KQ FWECSDDEVCSE SRDEELECPICWESFNIVENVPY
Sbjct: 1   MWKLASNAIAGIRSKKNSDVPKQVFWECSDDEVCSEASRDEELECPICWESFNIVENVPY 60

Query: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGH+LC+NCVLGLQG VLKLATRQ+RIPI ISCPWCHQLSLRVVYKGNLKFPSKNFF
Sbjct: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQMRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120

Query: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDANASQRHSFSDGRVSRHGIERRRRLFS 180
           LLWMVES NGNEGKLDH FN DNQ VFSLP              G V+      RRRLF 
Sbjct: 121 LLWMVESFNGNEGKLDHSFNSDNQSVFSLP-------------SGTVT----SERRRLFF 180

Query: 181 YEHLDCVIHLIFKFLLAVIFVLXXXXXIPGSALILLLYLLITFLFALPSLLIFYISLHAL 240
           Y HLDCVIHL+FKFLL VI   XXXXX PGSALIL         FALPSLLIFY++LHAL
Sbjct: 181 YNHLDCVIHLVFKFLLTVIXXXXXXXXXPGSALILXXXXXXXXXFALPSLLIFYLALHAL 232

Query: 241 EKLMNDITS 250
           +KLMNDITS
Sbjct: 241 DKLMNDITS 232

[Close]

BLAST of Carg26440-RA vs. NCBI nr
Match: XP_022150303.1 (uncharacterized protein LOC111018502 [Momordica charantia])

HSP 1 Score: 343.6 bits (880), Expect = 5.7e-91
Identity = 182/250 (72.80%), Postives = 197/250 (78.80%), Query Frame = 0


Query: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60
           MWKLASNA AGIR + NS VSKQ FWECSDDEVCSE SRDE LECPICWESFNIVEN+PY
Sbjct: 1   MWKLASNAIAGIRLRKNSVVSKQVFWECSDDEVCSEASRDEGLECPICWESFNIVENIPY 60

Query: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGHTLC+NCVLGLQG VLK+ATRQIR+PI ISCPWCHQLSLR+VYKGNLKFPSKNFF
Sbjct: 61  VLWCGHTLCKNCVLGLQGSVLKVATRQIRVPICISCPWCHQLSLRLVYKGNLKFPSKNFF 120

Query: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDANASQRHSFSDGRVSRHGIERRRR-LF 180
           LLWMVES N +EGKLDH FNGDNQPVF LP      S      D  VSRHGI RRRR LF
Sbjct: 121 LLWMVESFNDDEGKLDHSFNGDNQPVFPLPSDTETVSSER--LDSHVSRHGIGRRRRWLF 180

Query: 181 SYEHLDCVIHLIFKFLLAVIFVLXXXXXIPGSALILLLYLLITFLFALPSLLIFYISLHA 240
            Y++LD +IHLI KFL       XXXXX              TFLFALPSLL+FY++LHA
Sbjct: 181 VYKYLDWLIHLISKFLXXXXXXXXXXXXXXXXXXXXXXXXXXTFLFALPSLLVFYLALHA 240

Query: 241 LEKLMNDITS 250
           LE+LM+DITS
Sbjct: 241 LERLMSDITS 248

[Close]

BLAST of Carg26440-RA vs. TAIR10
Match: AT3G29270.1 (RING/U-box superfamily protein)

HSP 1 Score: 211.1 bits (536), Expect = 8.0e-55
Identity = 120/260 (46.15%), Postives = 157/260 (60.38%), Query Frame = 0


Query: 1   MWKLASNAFAG-IRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVP 60
           MW LAS+   G I  KN+      A  ECSDD+V S  S+DE LECPICWESFNIVENVP
Sbjct: 9   MWNLASSYLTGNIGPKNDIRRPVHAHAECSDDDVSSVGSKDEGLECPICWESFNIVENVP 68

Query: 61  YVLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNF 120
           YVLWCGHT+C+NC+LGLQ  ++KL T  +++P+FISCPWC+ LS R+V++G L+FP KN+
Sbjct: 69  YVLWCGHTMCKNCILGLQWAIVKLPTHPVQLPLFISCPWCNLLSFRLVFRGTLRFPHKNY 128

Query: 121 FLLWMVESLNG----------NEGKLDHPFNGDNQPVFSLPPSDANASQRHSFSDGRVSR 180
           F+LWMVE +NG           +G  DH       P        +      S +D R+ R
Sbjct: 129 FVLWMVERMNGERRNSPGGAQTDGNNDHT-RETPSPCLHNRHHRSQPEPSRSVNDHRIPR 188

Query: 181 HGIERRRRLFSYEHLDCVIHLIFKFLLAVIFVLXXXXXIPGSALILLLYLLITFLFALPS 240
             I+   R    + L   + L  KF L VIF+L     IP SA IL +Y+L+T L ALPS
Sbjct: 189 DNIQTSLR----KSLVFFVQLTAKFPLVVIFLLIILYAIPTSAAILAMYILVTLLLALPS 248

Query: 241 LLIFYISLHALEKLMNDITS 250
            LI Y +   L+ L+ +I +
Sbjct: 249 FLILYFAYPCLDWLVREIVT 263

[Close]

BLAST of Carg26440-RA vs. TAIR10
Match: AT1G69330.1 (RING/U-box superfamily protein)

HSP 1 Score: 196.4 bits (498), Expect = 2.0e-50
Identity = 124/271 (45.76%), Postives = 149/271 (54.98%), Query Frame = 0


Query: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEE-LECPICWESFNIVENVP 60
           MW  ASN    +  K +   S QA  +CSDDEV S  SRDEE LECPICWESFNIVENVP
Sbjct: 1   MWGFASNVIGSMGLKKSPKDSAQASSQCSDDEV-SNISRDEEGLECPICWESFNIVENVP 60

Query: 61  YVLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNF 120
           YVLWCGHTLC+NCV GLQ  VL+L+++ IRIP F+SCPWC  LS R+VYKGNLKFP KNF
Sbjct: 61  YVLWCGHTLCQNCVFGLQSAVLRLSSQDIRIPFFVSCPWCQLLSFRIVYKGNLKFPRKNF 120

Query: 121 FLLWMVESLNGNE-----GKLDHPFNGDNQPVFSLPPSDANASQRHSFSDGRVSR----- 180
           FLLWMVESLNG+               DNQ     P    +    HS ++  V+R     
Sbjct: 121 FLLWMVESLNGDRTXXXXXXXXXXXXTDNQQSAPTPRCSMSLG-NHSSNNNLVARPLLRN 180

Query: 181 ----------HGIERRRRLFSY-EHLDCVIHLIFKFLLAVIFVLXXXXXIPGSALILLLY 240
                     H  +  R+LFS+ + LD  I    KF   +IF+L     IPGS +     
Sbjct: 181 QSTDLLPHHDHSNQPSRQLFSFHKSLDFFISFTSKFPFVIIFLLIVFFAIPGSLIXXXXX 240

Query: 241 LLITFLFALPSLLIFYISLHALEKLMNDITS 250
                                 E+L+N+ITS
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXERLVNEITS 269

[Close]

BLAST of Carg26440-RA vs. TAIR10
Match: AT1G74370.1 (RING/U-box superfamily protein)

HSP 1 Score: 173.3 bits (438), Expect = 1.8e-43
Identity = 112/265 (42.26%), Postives = 157/265 (59.25%), Query Frame = 0


Query: 1   MWKLASNAF-AGIRSKNNSAVSK--QAFWECSDDEVCSEDSRDEELECPICWESFNIVEN 60
           MW LAS +   G  SK   A +K  +A  + S D    + +++E+LECPICWESFN+VEN
Sbjct: 1   MWNLASKSIREGFISKGEEAATKPRRATLDRSGDG--RKTTKEEKLECPICWESFNVVEN 60

Query: 61  VPYVLWCGHTLCRNCVLGLQ-GYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPS 120
           VPYVLWCGHT+C+ C+LGLQ   V+K +    ++P F++CPWC+ LSLR+V  G ++FPS
Sbjct: 61  VPYVLWCGHTICKYCLLGLQRAIVIKSSALPFQLPFFVACPWCNILSLRLVCNGTIRFPS 120

Query: 121 KNFFLLWMVESLNG--NEGKLDHPFNGDNQ--------PVFSLPPSDANASQRHSFSDGR 180
           KNF+LLWMVES+NG  +E   D+      Q         V +    D       S+ +G 
Sbjct: 121 KNFYLLWMVESMNGSRSEAPSDNKRVASGQRDLRNRCDGVSNTALGDEGLLDNRSWWNG- 180

Query: 181 VSRHGIERRRRLFS--YEHLDCVIHLIFKFLLAVIFVLXXXXXIPGSALILLLYLLITFL 240
           V+R G  R  RL     + +  V HL+ KF L VIF+L     IP SA +L +Y  +TF 
Sbjct: 181 VTR-GFFRTGRLHDSVRKSMALVAHLLAKFPLVVIFLLMALYAIPVSAAVLGVYFFVTFA 240

Query: 241 FALPSLLIFYISLHALEKLMNDITS 250
            A+PS L+ Y +  +L  L+ +I +
Sbjct: 241 LAVPSFLVLYFAFPSLNWLIREIAT 261

[Close]

BLAST of Carg26440-RA vs. TAIR10
Match: AT1G21651.1 (zinc ion binding)

HSP 1 Score: 48.9 bits (115), Expect = 5.2e-06
Identity = 31/89 (34.83%), Postives = 43/89 (48.31%), Query Frame = 0


Query: 41  EELECPICWESFNIVENVPYVLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCH 100
           EE ECP+C +S++    VP VL CGHT C  C+  L            + P  I CP C 
Sbjct: 2   EEPECPVCLQSYDGESTVPRVLACGHTACEECLTNLPK----------KFPDTIRCPACT 61

Query: 101 QLSLRVVYKGNLKFPSKNFFLLWMVESLN 130
            L ++   +G    P KN  LL +  S++
Sbjct: 62  VL-VKFPPQGPSALP-KNIDLLRLFPSIS 78

[Close]

BLAST of Carg26440-RA vs. TAIR10
Match: AT1G21650.3 (Preprotein translocase SecA family protein)

HSP 1 Score: 48.9 bits (115), Expect = 5.2e-06
Identity = 31/89 (34.83%), Postives = 43/89 (48.31%), Query Frame = 0


Query: 41  EELECPICWESFNIVENVPYVLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCH 100
           EE ECP+C +S++    VP VL CGHT C  C+  L            + P  I CP C 
Sbjct: 2   EEPECPVCLQSYDGESTVPRVLACGHTACEECLTNLPK----------KFPDTIRCPACT 61

Query: 101 QLSLRVVYKGNLKFPSKNFFLLWMVESLN 130
            L ++   +G    P KN  LL +  S++
Sbjct: 62  VL-VKFPPQGPSALP-KNIDLLRLFPSIS 78

[Close]

BLAST of Carg26440-RA vs. Swiss-Prot
Match: sp|Q13049|TRI32_HUMAN (E3 ubiquitin-protein ligase TRIM32 OS=Homo sapiens OX=9606 GN=TRIM32 PE=1 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 9.5e-05
Identity = 26/66 (39.39%), Postives = 35/66 (53.03%), Query Frame = 0


Query: 37  DSRDEELECPICWESFNIVENVPYVLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISC 96
           D+  E LECPIC ESF   +  P +L CGHT+CR C       + KL    I     + C
Sbjct: 12  DALREVLECPICMESFTEEQLRPKLLHCGHTICRQC-------LEKLLASSIN---GVRC 67

Query: 97  PWCHQL 103
           P+C ++
Sbjct: 72  PFCSKI 67

[Close]

BLAST of Carg26440-RA vs. Swiss-Prot
Match: sp|Q8CH72|TRI32_MOUSE (E3 ubiquitin-protein ligase TRIM32 OS=Mus musculus OX=10090 GN=Trim32 PE=1 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 9.5e-05
Identity = 26/66 (39.39%), Postives = 35/66 (53.03%), Query Frame = 0


Query: 37  DSRDEELECPICWESFNIVENVPYVLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISC 96
           D+  E LECPIC ESF   +  P +L CGHT+CR C       + KL    I     + C
Sbjct: 13  DALREVLECPICMESFTEEQLRPKLLHCGHTICRQC-------LEKLLASSIN---GVRC 68

Query: 97  PWCHQL 103
           P+C ++
Sbjct: 73  PFCSKI 68

[Close]

BLAST of Carg26440-RA vs. TrEMBL
Match: tr|A0A1S3CPH8|A0A1S3CPH8_CUCME (uncharacterized protein LOC103503329 OS=Cucumis melo OX=3656 GN=LOC103503329 PE=4 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 3.0e-96
Identity = 192/249 (77.11%), Postives = 200/249 (80.32%), Query Frame = 0


Query: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60
           MWKLASNA AGIRSK NS V KQ FWECSDDEVCSE SRDEELECPICWESFNIVENVPY
Sbjct: 1   MWKLASNAIAGIRSKKNSDVPKQVFWECSDDEVCSEASRDEELECPICWESFNIVENVPY 60

Query: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGH+LC+NCVLGLQG VLKLATRQ+RIPI ISCPWCHQLSLRVVYKGNLKFPSKNFF
Sbjct: 61  VLWCGHSLCKNCVLGLQGSVLKLATRQMRIPIVISCPWCHQLSLRVVYKGNLKFPSKNFF 120

Query: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDANASQRHSFSDGRVSRHGIERRRRLFS 180
           LLWMVES NGNEGKLDH FN DNQ VFSLP              G V+      RRRLF 
Sbjct: 121 LLWMVESFNGNEGKLDHSFNSDNQSVFSLP-------------SGTVT----SERRRLFF 180

Query: 181 YEHLDCVIHLIFKFLLAVIFVLXXXXXIPGSALILLLYLLITFLFALPSLLIFYISLHAL 240
           Y HLDCVIHL+FKFLL VI   XXXXX PGSALIL         FALPSLLIFY++LHAL
Sbjct: 181 YNHLDCVIHLVFKFLLTVIXXXXXXXXXPGSALILXXXXXXXXXFALPSLLIFYLALHAL 232

Query: 241 EKLMNDITS 250
           +KLMNDITS
Sbjct: 241 DKLMNDITS 232

[Close]

BLAST of Carg26440-RA vs. TrEMBL
Match: tr|A0A2I4DZD3|A0A2I4DZD3_9ROSI (uncharacterized protein LOC108984877 OS=Juglans regia OX=51240 GN=LOC108984877 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 9.0e-69
Identity = 144/263 (54.75%), Postives = 176/263 (66.92%), Query Frame = 0


Query: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60
           MWK ASNA A I  K NS  S +A  ECSDDEVCS  SRDE LECPICWESFNIVENVPY
Sbjct: 1   MWKFASNAIASIGLKKNSLESTRACPECSDDEVCSNASRDEGLECPICWESFNIVENVPY 60

Query: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGHTLC+NCVLGLQ  V K  T+QI IP FISCPWCH LS R++YKGNLKFP KNFF
Sbjct: 61  VLWCGHTLCKNCVLGLQLAVFKFPTQQITIPFFISCPWCHLLSFRLIYKGNLKFPRKNFF 120

Query: 121 LLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDANASQRHSFSDGRV-SRHGIERR---- 180
           +LWMVESLNG+  K      GDNQP+++   + A  +Q  + +  RV S HG   R    
Sbjct: 121 ILWMVESLNGDRLKFSSSSRGDNQPIWTPRCNFALGNQATNGNQRRVPSNHGPRHRGSNN 180

Query: 181 ---------RRLFSYEHLDCVIHLIFKFLLAVIFVLXXXXXIPGSALILLLYLLITFLFA 240
                     ++  +  LD  +H   KF L +IF+L     +PG A+IL+LYL++T +FA
Sbjct: 181 DNGGSNVEQHQIDLHNSLDFFVHFTSKFPLVIIFLLIAFFAVPGCAVILVLYLVVTLVFA 240

Query: 241 LPSLLIFYISLHALEKLMNDITS 250
           +PS L+ Y +   LE+L+ +ITS
Sbjct: 241 IPSFLVLYFAYPTLERLVREITS 263

[Close]

BLAST of Carg26440-RA vs. TrEMBL
Match: tr|A0A2N9J647|A0A2N9J647_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59713 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.2e-68
Identity = 145/263 (55.13%), Postives = 174/263 (66.16%), Query Frame = 0


Query: 1   MWKLASNAFAGIRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVPY 60
           MWK ASNA A I  K NS  S +A  ECSDDEVCS  S++E LECPICWESFNIVENVPY
Sbjct: 2   MWKFASNAIASIGLKKNSVESSRASHECSDDEVCSNASQEEGLECPICWESFNIVENVPY 61

Query: 61  VLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNFF 120
           VLWCGHTLC+NCVLGLQ  VLK  T+QI++P F+SCPWCH LS R+VYKGNLKFP KNFF
Sbjct: 62  VLWCGHTLCKNCVLGLQLAVLKFPTQQIKVPFFVSCPWCHLLSFRLVYKGNLKFPRKNFF 121

Query: 121 LLWMVESLNGNEGKLDHPFNGDNQPV------FSLPPSDANASQRHS--------FSDGR 180
           LLWMVESLNG+  K      GDNQP+      F+L     N++ R +        +    
Sbjct: 122 LLWMVESLNGDRSKFSSSC-GDNQPIWSPRCNFALGNQATNSNPRRAPSTICPVHWGSRN 181

Query: 181 VSRHGIERRRRLFSYEHLDCVIHLIFKFLLAVIFVLXXXXXIPGSALILLLYLLITFLFA 240
            S      R +   ++ LD  IH   KF L +IF+L     +PG A+IL LYLL+T LFA
Sbjct: 182 DSGSSSVERHQFSLHKSLDFFIHFTSKFPLVIIFLLIAFLVVPGCAVILALYLLVTVLFA 241

Query: 241 LPSLLIFYISLHALEKLMNDITS 250
           +PS L+ Y +   LE+LM +ITS
Sbjct: 242 IPSFLVLYFTYPTLERLMREITS 263

[Close]

BLAST of Carg26440-RA vs. TrEMBL
Match: tr|A0A2P4H3F1|A0A2P4H3F1_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_16319 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 7.4e-63
Identity = 138/266 (51.88%), Postives = 173/266 (65.04%), Query Frame = 0


Query: 1   MWKLASNAFAGIRSKNNS----AVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVE 60
           MWK ASNA A I  K NS      S +A  +CSDDEVCS  SRDE LECPICWESFNIVE
Sbjct: 1   MWKFASNAIASIGLKKNSGKNLVESSRASQDCSDDEVCSNASRDEGLECPICWESFNIVE 60

Query: 61  NVPYVLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPS 120
           NVPYVLWCGHTLC+NCVLGLQ  VLK  T+QI+IP F+SCPWCH +S R+V  GNLKFP 
Sbjct: 61  NVPYVLWCGHTLCKNCVLGLQLAVLKFPTQQIKIPYFVSCPWCHLMSFRLVCNGNLKFPR 120

Query: 121 KNFFLLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDANASQRHSFSDGRVSRHGI---- 180
           KNFFLLWMVESLNG+  K     + +NQ ++S   + A  SQ  + +  R   H +    
Sbjct: 121 KNFFLLWMVESLNGDRSKSAFS-SVENQSMWSPRCNSAIGSQATNVNPRRAPPHCLGHLG 180

Query: 181 ---------ERRRRLFSYEHLDCVIHLIFKFLLAVIFVLXXXXXIPGSALILLLYLLITF 240
                      RR+   ++ LD  IH   KF L +IF+L     +PG A+IL +YL++T 
Sbjct: 181 SGNDNGSSNVERRQFSLHKSLDFFIHFTSKFPLVIIFLLIAFSVVPGCAVILAIYLILTV 240

Query: 241 LFALPSLLIFYISLHALEKLMNDITS 250
           +FA+PS L+ Y +   LE+L+ +IT+
Sbjct: 241 VFAIPSFLVLYFAYPTLERLVREITT 265

[Close]

BLAST of Carg26440-RA vs. TrEMBL
Match: tr|A0A1D1Y7B5|A0A1D1Y7B5_9ARAE (RING finger protein 208 OS=Anthurium amnicola OX=1678845 GN=Rnf208 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.7e-59
Identity = 138/266 (51.88%), Postives = 164/266 (61.65%), Query Frame = 0


Query: 1   MWKLASNAFAG-IRSKNNSAVSKQAFWECSDDEVCSEDSRDEELECPICWESFNIVENVP 60
           MW  AS A  G I  K     + QA  ECSDDE  S  S +E LECPICWESFNIVENVP
Sbjct: 1   MWSFASKAIGGSIGPKEKCVKTGQASAECSDDEASSNISGEERLECPICWESFNIVENVP 60

Query: 61  YVLWCGHTLCRNCVLGLQGYVLKLATRQIRIPIFISCPWCHQLSLRVVYKGNLKFPSKNF 120
           YVLWCGHTLC+NCVLGLQ  V+K  T  I++P+FISCPWCH LS R+VYKG+LKFP KNF
Sbjct: 61  YVLWCGHTLCKNCVLGLQWAVVKFPTLPIQLPLFISCPWCHLLSFRLVYKGDLKFPRKNF 120

Query: 121 FLLWMVESLNGNEGKLDHPFNGDNQPVFSLPPSDANASQRHSFSDGRV--SRHGIERR-- 180
           FLLWMVES+NG+  K    F+ D QPV+S      + S+ H  S  R    +H   RR  
Sbjct: 121 FLLWMVESMNGDRVKAHSSFSADRQPVWSSNSGVLSGSEVHQHSGQRTLYLQHDQSRRNP 180

Query: 181 -RRLFSYEHLDC-------------VIHLIFKFLLAVIFVLXXXXXIPGSALILLLYLLI 240
               F   +LD               +HL  KF L VIF+L     IP SA IL LY+L+
Sbjct: 181 SNENFIVNYLDIGRVQQSLRKSLLFFVHLTAKFPLVVIFLLIVLYAIPASAAILALYILV 240

Query: 241 TFLFALPSLLIFYISLHALEKLMNDI 248
           T LFALPS LI Y +  +L+ L+ +I
Sbjct: 241 TVLFALPSFLILYFAYPSLDWLVREI 266

The following BLAST results are available for this feature:

BLAST of Carg26440-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946373.1	7.1e-134	99.20	uncharacterized protein LOC111450453 [Cucurbita moschata]	[more]
XP_022999337.1	1.9e-126	94.38	uncharacterized protein LOC111493743 [Cucurbita maxima]	[more]
XP_023547098.1	1.4e-118	90.36	uncharacterized protein LOC111806010 [Cucurbita pepo subsp. pepo]	[more]
XP_008465708.1	4.5e-96	77.11	PREDICTED: uncharacterized protein LOC103503329 [Cucumis melo] >XP_008465709.1 P...	[more]
XP_022150303.1	5.7e-91	72.80	uncharacterized protein LOC111018502 [Momordica charantia]	[more]

BLAST of Carg26440-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT3G29270.1	8.0e-55	46.15	RING/U-box superfamily protein	[more]
AT1G69330.1	2.0e-50	45.76	RING/U-box superfamily protein	[more]
AT1G74370.1	1.8e-43	42.26	RING/U-box superfamily protein	[more]
AT1G21651.1	5.2e-06	34.83	zinc ion binding	[more]
AT1G21650.3	5.2e-06	34.83	Preprotein translocase SecA family protein	[more]

BLAST of Carg26440-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q13049\|TRI32_HUMAN	9.5e-05	39.39	E3 ubiquitin-protein ligase TRIM32 OS=Homo sapiens OX=9606 GN=TRIM32 PE=1 SV=2	[more]
sp\|Q8CH72\|TRI32_MOUSE	9.5e-05	39.39	E3 ubiquitin-protein ligase TRIM32 OS=Mus musculus OX=10090 GN=Trim32 PE=1 SV=2	[more]

BLAST of Carg26440-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CPH8\|A0A1S3CPH8_CUCME	3.0e-96	77.11	uncharacterized protein LOC103503329 OS=Cucumis melo OX=3656 GN=LOC103503329 PE=...	[more]
tr\|A0A2I4DZD3\|A0A2I4DZD3_9ROSI	9.0e-69	54.75	uncharacterized protein LOC108984877 OS=Juglans regia OX=51240 GN=LOC108984877 P...	[more]
tr\|A0A2N9J647\|A0A2N9J647_FAGSY	1.2e-68	55.13	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59713 PE=4 SV=1	[more]
tr\|A0A2P4H3F1\|A0A2P4H3F1_QUESU	7.4e-63	51.88	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_16319 PE=4 SV=1	[more]
tr\|A0A1D1Y7B5\|A0A1D1Y7B5_9ARAE	1.7e-59	51.88	RING finger protein 208 OS=Anthurium amnicola OX=1678845 GN=Rnf208 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR017907	Znf_RING_CS
IPR013083	Znf_RING/FYVE/PHD
IPR027370	Znf-RING_LisH

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg26440	Carg26440	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26440-RA.CDS.1	Carg26440-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26440-RA.exon.1	Carg26440-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg26440-RA	Carg26440-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 237..249
None	No IPR available	PANTHER	PTHR13139	RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN	coord: 14..249
None	No IPR available	PANTHER	PTHR13139:SF55	SUBFAMILY NOT NAMED	coord: 14..249
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 40..102
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 45..97 e-value: 1.3E-9 score: 37.8
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 33..137 e-value: 3.5E-13 score: 50.9
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 64..73
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 45..100 score: 10.07