Carg26078-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26078-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Hiv tat-specific factor 1 like
Location	Cucurbita_argyrosperma_scaffold_145 : 248443 .. 259092 (-)
Sequence length	2477

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCTTTTCCCCTACCCGGTTTCTTCATCTCTGATTTCTCCCGTTTCCCAATTCTTCCGCAGCCTCTCCATTTCTTGGTCGGCATGGATCAAATGTTTCCTTTTTCAACAACTCTATAAATTAGGGTTTCTTTTCTCCTTCATTTCTCTTCTTCTTCCTCACTTCAACCCACAACCGCAATCCTCTCCGCACGACCCCACTTCCTCGGCTCTAAAGCAGTTCCGATAAACACCTATATCAGCTTTACGTATGTTTCTAAATACCTGTATTTTACTGGTGAATCATGTATTGTTTCTTGAAGAACCAAATGTTTCAAATGTTGTTTGGTCACTTCAGTGAAGTCGGTTTGTCTGTGCTCATCTCCTTTTTCTGCAGGTATGGACAACAATCCTTCTGGGAACCCTGAAACGGTTACTGAAGCTGGATGGTATATTCTTGGTGAAGATCAGCAACATGTTGGTCCATATGCATTTTCTGAATTGCGCGGTGAGTTTTATGTACTGAACAATACATTTTTGCATATAGCTGATTTATATTGTTCCAGGCATCAAATTTGATTCTTGTTATTTGTGAAGTATATAGATGAGTTACTTACTGGAAATGAAATGTACCTTGGCACCTTGTGTCATGACAACTCTTAAGTTTTGTCTTGTGAACTGTCGGTTATTCCTCGAATTTAGTTTCAGTCTTTCTTTCTTGAATTTTAGTTGTACAAGTAAACAATAGCACGCCGGATCATGTTCAATTGATATAAAAGCTATAGAAACATTTGTTTAGTTAATTTTCCGCCCTGGGCAGATCATTTTCTGAATGGGTATCTCATGGAAAGTACATTGGTCTGGTCTGAAGGACAAAGTGAATGGCATCCGTTATCGTCTATTCTTGGGTTGACAACGAAAGTATTTCAACAAGAATCTGATTTGTCAACTGCAGGTGAAGTCTCGTTAATGTCTCCATAATTATTTATGAGTTACTAGTCAAATTATTGCCAAGTGTTTATTGGGTGTTTCAGTTCCTGTCAACAACAACAATGGCGATGATGAGCTTGAGAAATATCAGAAGGAGGTTGGAGAAACAGAAACTACAATTGAAGCGTCAAGTCCTTCTAGTGGCAGGAATTTCAGTATGGTGGAAGGTGATCTTGACAGACCTACTACACCACCAGAGGGTGAGGAAGAATTCACTGATGATGATGGGACAACTTACAGGTGGGATAGAGCTCTCAGGGCCTGGGTACCTCAGGTATTTTTCTTAGGAACCTTGTGCATGATGTAGGATTTACATTTATGATGCCTTATGTTTGCTCTAGAGAGTCATAAAGTTTGAAACGTGAAATCATTTGTCATGCCACTATAGATCTAAGTTTTCTTCCCCCCACCCCATCTTAGAAGATGGATTGGTAAGAAATTCAACCATAAGCAACCATATTTTCTTCTATGTCTACATTCCACATAATGCTGTCTTTTAGTTTTTCTGACATAAGTTTTTTGTAGTTTCTATATCATCTCTTCCCATGGATTCATGTACGAGCGTGACTTAATTGGTGTATTCTTCCTTTATAATCAATCATAATTATTATGAGCAGGAAATGTTGTGGCATAGAGTGGTCCCGAGTATTTCTGGGAAAGATGATCTAGGTTGGCACGAGGGTAGGTTGTGGTAGGAGTCCGGGAGAGGTTTCCCATAGTTTTAATTGAAACAAATTTTTTCATTTAATTAGTGAAAAGTTAGTAAGTATGATAATCAGAATTCTCAAACCCTAAGAAGTCTGCAAAAATATTCTAAAACAAAGAATACATGCTCCTAAAATAAGGGGAAATTAAATAAAGGATCCCCAGTTACACCCTATATCCTGGAAAGGAGTGTTACTTAATAGTGTGAACAATGAACATCAAGAAGATGTTTTATGTCTAGCTACATCAACTCTCTCATCCCATTTAGTGAATTTTTATTCAAATCATTTTTAATTTCTTTTGAACTGTAATTTTGAAGTTGTTACTTTGACTGCGTTTTAATATTATCAGTTCAACTTCTTTGAATTTGACTCCACAAGTTAATTGAAGAAATAATGTGCTTGGATCCACTATCTATCACCTAAGGGATATTGAATGGTTGAAGGGACTGCCAACACTTGTTGCATAAACTTTCGTTGAGCAAATGAAAGAATACGAAGGCGTACAAAAAACAAGATTGAAATAGTGGGAGTCCAATACAATCTACAAGAAGAGGCTCCAATCCAAAAAAAACAAGACCAAGATGATAACGACGAAGTCCTAGAGTTCGACGACCACAAAGAGGCATTAAATCTAACAATCTACCCAGCCTCCTCACCTGACCTCTCTCTTATCTCTAAAAACTTTTTTATTTCTCTTGAGCCAAATATCCTATAATAGAACAAAGAAGTTGGTTGGCCACAACACAATGCCTCTTTCCCTAAAGGAGGAATGCAAAAACACCTCCTCCATCCACAAACCCCCATCACTTTTACATGCCTCACTAACCCCGAACGGTCTCCTCCACAGGTCCCATAAACCATTAGCAAAAACGGGCAATCCCACCACAGATGATTCAGGTCCTCCTCATATTTCTTATTGCACCATTGTAGGTGCAAAATTAAGGAAGTGTCTTTGAACGTGATCCGTAGTGTTAACCTTCTCATTTAAAATGTGCCACCCAAAAAGCCTCACGTTCCTAGGAATTTTAACATTTCAAATAGAAGCAAAAACAGAAGACTAAGGGGCATCTAACGTTTAACAGGGCTTGGGAGAGATACAATGAGTGGAAATAGGAATGACATGAAAAACCCCTTGAAGGATCAAGGGTTCAAAAGCGAACATCTCTCCTCCCAAGGATCTGCCACATCTTTCCCCTCCCTGTTAGTAAGTGGTCGATGAAAACTGAAGGAGAGTCGATGAAGTGTGCTCGTTGATTGATTGTTGGGAGAGTATATGCCTTCCTTGGCTTTTGAAGAGATAAAAGCAAATAGTTGCATTCATGTAAGAAGGACTTGTATTTAATTACAACATATTGTCCGATTAAAACAAAAAGAATCTTAAGTTTATTTTCATTGTGTAATTGTTTGTTTGGGCGATATAAAATTTGGAGAAAATGTTTTGGAGTATTTTAAAGTATATTCCTAATTTATTGCTTGGATGCAAAAACATGTAAATTTATTCATATCTACAATGACTTTTGGTTAAATGTATTTTATGGAAAAGGGGAGGTTTTCTTCTTCATTTGCCCATTTGCAGTAAGGAGCCGTTTTCGTGGCAAACTAGGATTTGTGCTATTTTGTGGGGTATGTGGGGGTGAGAGAAAGAATTCTGGCGGAGAGAAGAACAATAAATCCTTTAGAGGACCTTGAGTGAAATTCAAGTGGTGTGTGGTCCCTCGTAGGGTTCCATCTTGTCTTTGAGCTTTGGTTGCGAAGGATTTTTGTTATTATCCTGTAGGTCATATTTTACTTGATTGGAGTCCCTTTTGTAGTTTGGCTCCTTTGTGGGCTTCGTCTTTTGTTCACCCTTGTATTCTTTCATTTGAAGTATGGTTATTCATAATTATTTTTTTTGGATATTCTTCTATATTTTTCCGCAACACGAAATTTATTTGTGTCACTGTTTATGTGCTTGATTATATATATTGTTTGCAAATTCCAATAAACTACTTGGGTGTGTTTGGTTCAAGGGTTCAGGGAGCTGGGTTTGTATAGTTTGGAGTTGAGAAACTTGGGATTGTGTAGTCTGGAGTGGGAAACTTGGTTGTATAGTCTATTTGGATTTTTTAGAGTAATGAGTTTGAGAACCTTGATTTAATGTAGCTTTGAGTTGCATGTTTGTAATTTGTAAATGTGTGTAGATTGAGATGTGATTTTCCTGGGGTTTGTTTAGTTCAGTTCTATGGCCATGAAATTAGAAAACTTACAGTCTTGGATTAGCTAGCCACCTAGTTTACACTCAATTTCTAAACTTGAGACCATGCACCAGACACCCCATGGGCTGTTTCTATCCACCCAGATATATTAGATATAATTTTGAATGATCCACCCATATGTATATATATATAATATGTTTGTATGATATCAAACTTTCGATCTACTTTGGAACAGGATGATGCATTTTTTAAACATGAGCAATATGGGGCCGAAGAGATGACTTTCGTGCAAGAAGAAGAAGTCTTTCCACAGCTTCTAACTGATACCACTTGTACCTCCATCAAGGAAGAAGATGATTCTGTTCCTTCCACCTCCATCAAGGAGGAAGATTGTGTCACAAAAGAAGCTAATAGCAAAAGTGAGGACATGGAAACCAAACAGAACGGGAAGAGAAAGTTATGTGACAAGCAAGTTGAAAAAAAGGTTTTTCCTTGGATTGTATCTTTAATTTATTTATGAGAGTAGAAGAGAGTCACTTTAGATAAATTCATTGCTATCTAACTTGATTATCTTTATGTTTAATGGATGCCGCCTTTTGCAGGAAGCAAATAAAGGTCCTGATGGTTGGTTTGAACTAAAAATAAATACACATGTTTACATAACAGGGTTGCCGGAGGATGTTACTATTGATGAAGTACGTTCTAGACATGTTCCTAGTTGTTGTATCTTTGATCATTGTTTCCATAGGATGCTGAAGTTTTCTGTCATATGTTGCAGGTTGTGGAAGTTTTTTCAAAATGTGGAATAATAAAGGAGGTATTTATCATTTGACATGCTATGCTTACATGAGTAGATACATTCAATGTTTAGTTGACCTGGTTTTGTTAATTCCATATTTGATAAATATTTTCTTTTAAACAAGGACCCGCCTTTAAGAGAACCACAACAAAGGCACATGAACTGGGTTATCTTCAATTTTTTGGAAGTAGTTCCAAGGGGGAGCTATAATATTCTTTGAAATATTTGATGCCATTACCAACAACTTGTAATTACTTCCCTCTGATAATTGACCCTTCCCCACTTAAGCACGCAATCAAGGGAAATTTAGAGAACTTTGTTTTCAATACGATATAAACTGTCAGACAAAAGAACCTAAGAGTTAACAGGACTCCATATTGATTACTGTAGATAGTTAAACAAGTTTGGCTTAAAACATCCTTAACCATTTCTTGGCAGTAGAGACAGAAGAAAGCCGCTGGGCAGGAAGGAGAGAGTAACACATTTGGCAATGCTCGAGCACTGCATAATGGTTGAAACATTCATTTCGAGAATGGGAGACCATGACCGAGCACGACATATTTTTGTTTTATTTATAAGAAGCCATGCTTTGATTGCAGAAGAATTGAAAGAATACTAGTGCATAACAAAAACAGCTCACAAAAAAAATTTATGCACTGTTCGTGCATGGTCAAGTTTCTTGAGCCATCTCTAGTTCCTAGAATCATTTGTGTGTTTCAGATACTCCTTCTAGGTCTTGTTATAAATCCTACCATGGCTTACCATCTCATGACTTGGATACGAACCAATCAAACCACTTATATAGGGGATCATAAGTAGGTCTGGCTAAATTTGCAGGGCCCATATGGAATTCTCTCTAGAGTGAAGATAGAGTCAAATCAGCAGGGTTATACAAATACATTGGCCCCCCTTCTATTTTGGATTCACTCTAGAGTGAAGATGGAGTCAAATCTACTGGGTCATACAAATACGTAAACAGATCTGCCTAAATTTTGGGTACACTATATCTATGAAAGTATGCATGTGTAGACCCTCGGAAGACGTCTGGGTGCTTTGTCCCTTCATTTCTCTTTATAGCTTTCGAAATCTCTATGTCTTCGAACTTTCTTTGTAGGTCAACATTTATCAACCACTGATGGCGTCCACTCATTGCCAATTAGCCCAAACCCATGCCCATCTTCTTTCATGAACGGACTATTAATAACTGGAACAATTTTCTCGACTCTGAATCTTCAACTTGTTCCTGTTGCTTCATAATATTGCTGAAATATCCGTTCTTTAACTGCTTAATTTTACACATTTGAGTAGCCTTTCTGAAATACTCCGTTTCATCCCCTTCCTTTAACCAACTTAATTTTACACATTTGGAGCAGCCTTCTATCTTCTTTTTGGTATGTTTTTCATAATTTCTCTTTTAGTCTTTCTTCAATTTCATCAGTCTTCTTTTCTCACAAAGTGCAATATCAACTGATCTCTCTTCTTCTTCTTCTTCTTCTTCTTCCCTCATATTTCCCCCACTCTTCTTTCACCGTTTCTGTCTGTCCTTTGAATCCCATCATTTGATGCTTTGTTTAAGACTATCAATTTCTTTATTAAATTATAACCAGCCCCACGCTCCCACCCTTCCACCTTGACTGAATTTCAATTTTTCCCACCAATATAAACCAATTCTTTCTTGTTTAGCCAAATGTCCGAGAAACAAAAAGATGGTTGTGCCCAAACTAAATTTCTTGCTTCAAGAACAGCGGTGAAATTATCCTATATTGGTGAAATTATCCTATATTCTATTCAATCTTGATTCTTTGAAAGGTTTAATCCTTTTTTTAGACAGAAAGGCAATGTTCATTTTTTGTGAAGTATCATCCTTACACTATCTTTCTCATGCCACCCACCATATAACAATGAAAGTATGATTTTTCCTACAAAAAAACTATATTTGATTAAAAAAATCTAAACTTTGTTGGATAGGAGTCATGCACTCATCCTTTTGATTACTTTTTAGGTATTACAACATTCGGAATGATTGTTGGTTGTAGAAAATGGGGAGATAAATCTCAGTCTTGCCTAGTTATGTCAATTCAAAAGCCACCATGTTGTAATTCATTAGGAGAGAGAGGATATTGAGATGATTTCCTACCTCATGTTTTCATGCTTTTATATTCATTTATTGCTTGATGGTTTCCTAGTTCTCATGCAAGCTAGTTTATCTAGGGATGCCAAGAATTCTTACGAACATTTTAGGTCACAAACGTATTATGTTCTTACTCTAAATAGTTATATGTTCTTTGCAGGATCCTGAAACCAAAAAACCTCGTGTTAAGTTGTATGTTGATAAAGAGACAGGGAAGACGAAGGGTGATGCTTTAGTCACCTATCTGAAGGTAATTTTGTTATCCTCATTTTTATCTTCTGCCTCTTTATTTTCCTTACCTCTTCCTACATTTTTCCTTCGTGATGTTATCCACATGGTCTACTCTATGTGTTTGCTTGGCCAGGAACCCTCTGTTGCTCTGGCTATGCAAATTTTAGATGGCACGCCTCTTCGTCCCGGGGGGAAAATTCTTATGTCTGTTACTCAAGCTAAGTTTGAGCAAAAAGGTAGTGTTTACTCGCTAATTATTCATATTTGAACATCTTTTGCATTTCTTTATCTATCTAGAATTCTTTGTTCTCCGCAGGTGATAAATTTGTATCAAAAAAAGTAGACAACAAGAAGAAAAAGAAGCTTAAAAAGGTTGAAGATAAGATACTCGGCTGGGGTATGTGTTTAGTTTATATATATTTGTTTAAATTTGTAATTGCCCTCTCTTTTCATTCTTCTTGAGTGCAAGGCTTTTCCTCTTCCCCCAGCCTAAGGGCTGTTTATTCCCCTTTTTGTTTTAATCTATACCACAGGTTTCTTGTTTAAAAAAAAAAAAAAGAGTTCTATATAAGAGTTTTACTTTTTTCTGATATCAAACATACAAATAAAGTTCTATGTTGCGATTATTCATATTCTTGTTATTATTTATTATTATTTTTTAAATAAGACTCTAGTGTTCATTGAACCCAAGTTAGGTTATCACTGTTTCTTGTGTGCAATTGGTGCTATGCTAGATATGTTGAATTCTAAGAAGCATATGATAACTTTTTTTTAACAATTGAGAGCTGATCAGAAGAATCCATCGGTTTGGATAGTCATGTGTTAATTAATACCCATGCTGTAATGAGAAGCCTCATGGTCCAGATGTAGGATAATAATTTGTCAGGATTTCATTAGACCAGTGTTAATTCTTAGCATTGAGTGTGGTAAATAGATGAATTCTATAGTTTGTTCATAAGGAGTCTAAAAGGGAAGGGATGAGAATGGAAAATGGTAGGTACAAATTGAGGATGGGTTGCTTACCATCGACCTGAGAAGAATTTTTCTTGCTCAATGCCACTTCATACAAAATATAGCTCAGCTTCTTCCTCCTTTCCTTCCAATTATCTTTTCGATAACAATTTCCATTTTTTACACTTCCTAGCCTACACCTAGAAATAATTTCCCCGCCCTTGTTTACTTTGTGCAGGTGGCCGAGATGATGCAAAAATTTCAATTCCTGCAACTGTTGTTCTCCGTTTTATGTTCACACCTGCTGAAATGAGGGTTAGTTCAATAATCTTTTGTATATTCTCCAAGTAATTGGAATTAACATGTGATGACATCTTTGTTATTTATTCATCTTTTATGGTGAAACTGGAATTGACTTCTACTAACTTGATAATTCCTCCGTTGAGTTGCATATTTTTTATATTTATAGATATTAGTAAATACAAGTATATATTAGTTCTAACACTTTGCCTGGCTTAACTACCAAGTTTTTTGTTAGAAACTAAGCCAGATTCATGATGCACATTCATGAATTTATAATTCCTAGGTATTCAAATTTTCAGGTGCATGGAGGTTCGTTTGTTAAGGACATGAATATTAAATGTCTTTTAGATGTGCCTCTTGGGTTATCATTAAAGGAATCATTCTCCTTTGTAACTAAGTCAATTGAAAAGTCGAGTAAAGAAATTCAAGAGAACAATTTTCGTCTCTTCAATATTGAGTTTTGTAAGACGACAAAGTTTATTCTCTTCAAAATTGTGAGATTTAAAGTATTATTGTAAGCTCTTTGACGTTCACCATCGTTTTGTTATCGCTAGAATCCTCCTATGTCTATTAGCATAGCTGGTCTATGTGTTGGCCGGCACAATACCACCAATCTTTTTTGTAGGCCATTTCTATTTTTATTTTTAATTGGACATGCAGTGGTAGGTATGCCCATATATAGATTTATAAGCATGTGCATGCATTTCCATGTTGAGTTAGACTATTTTGACTGAAATATTTTTGGACAGAAGTAGAGGGTAAGTAGCTTGGTCATGTAAATATTGATGAAACAACAGCTGGTTCTTGTAATTTGGAGTTGTTAATGAAAAGTAAAAGGTTCTATCTCTTGTGTAGACCGATGAAAATTTAGCTTCAGAAATAGAAGCAGATGTTAAGGAGGAAAGCACAAGGTTTGGTCCTGTGGATTCTGTTAAGGTACCTCACCTATTTCTTTCCTTTCTGAATTTTGGTCTTTCTGTAAGTATTTAGTATGCCTTTTAAAAATAAAATGCTAGAATGTCGAAAATGAAGTGTTTTGTTGTTAATAATATATTTGATTTTTTGTTGGGGTTTGGTTCAGGTCTGTGAAAACCATCCACAAGGTGTGGTTTTGATAAGATTCAAAGATAGGAAGGATGCTCAGAAATGTATAGAGTTGATGAACGGAAGATGGTAACACATTTTGGTGTTAATGTTCCCTTTTCCTTTTCCTTTTCCTTTTCCTTCTTTATTTATGATAGTTTAAATCTCATTGGAATTTTGAACGTTTAAAACTTTGGTCGCTGCTACTATTTTACTCAAAACATTTGTTTTAGCCAACTTATGAGGCCATACATACGTGTCATGTCCAAAGTGGAATAAAGTTAAAAATTGAGGGACAAAAGTGGTGGTGTTGGGAGTTCAAAGTGCAAGAACAAGAACAAGAACAAAAATGAGAGATCTAAAGGAAAACAAAACTTTGATGGGTGGTGTAAGTTGGAGTAGCAGAACTTAGTTTGTATATATGTTTGGACAGGTTTGGCGGAAGACAAATTCACGCAAGCGAGGACGATGGTTTAGTGAACCATGCTTCGGTGAGGGATCTTGAAGCCGATGCTGTTCGCTTGGAGCAGTTTGGTTCAGAACTTGAGGCTGACTGACTGACTCTAAATGCGCCCAAGAAAGCTGTTGAATTTTTCTAATATAGCCGTACGCGCCTGTATGAATCCTTAGAGCATTCTGTACATTATTATTATTATTCATATTACATGGCCTTCCTAGTTAGTGTTGCACCTAAAACCTCACCTGCTGTAAAAGAATTTTTTCCCCTTTTCTTAACTATAACAAGTTTTCCCTTTCTTTGAAGGCTAATGCATTCTTGATGTAGACTAGGTTCAAAGCTACTTCGATTAAGGTACAACACTTTAGTTTTTGTACTTCTGAACAATTTAATATTTCCACTTTTGTATGTAACCTATTTATTTCCTTTATTTTAAAATTTGTAGCGATTGAAAATATGATTAGAGGAGTTGAATGGAATTTCTTACCAAGGTAGATCACTTAACTGATGGAATGTGTTTATAAATTATAATTACTAACTCCTTAAAGATAGGATGCTTGTGAGAGTGTATATTTGCACCAACACTTGGGAACTTTTTACACCAATTTTCTATACATACTCGTAAGTTAAATTTTTGGTGCCGTTGTTTTGGCACTGTTGTTGGGAAGTTCGATAAAATTTTCTTTTCTCAATTTGTTTTTATAGAGTTGCGAGTATAAGCTGCAAGGCAACTGCAGAGCAGCATGGGGAGTATAAGTTTAGGAGTGTATGAACGACAACTCTGGTTTGGAATTCCTACTTAATCTAGAATAGAAGGACAGATCG

mRNA sequence

ATTCTTTTCCCCTACCCGGTTTCTTCATCTCTGATTTCTCCCGTTTCCCAATTCTTCCGCAGCCTCTCCATTTCTTGGTCGGCATGGATCAAATGTTTCCTTTTTCAACAACTCTATAAATTAGGGTTTCTTTTCTCCTTCATTTCTCTTCTTCTTCCTCACTTCAACCCACAACCGCAATCCTCTCCGCACGACCCCACTTCCTCGGCTCTAAAGCAGTTCCGATAAACACCTATATCAGCTTTACGTATGGACAACAATCCTTCTGGGAACCCTGAAACGGTTACTGAAGCTGGATGGTATATTCTTGGTGAAGATCAGCAACATGTTGGTCCATATGCATTTTCTGAATTGCGCGATCATTTTCTGAATGGGTATCTCATGGAAAGTACATTGGTCTGGTCTGAAGGACAAAGTGAATGGCATCCGTTATCGTCTATTCTTGGGTTGACAACGAAAGTATTTCAACAAGAATCTGATTTGTCAACTGCAGTTCCTGTCAACAACAACAATGGCGATGATGAGCTTGAGAAATATCAGAAGGAGGTTGGAGAAACAGAAACTACAATTGAAGCGTCAAGTCCTTCTAGTGGCAGGAATTTCAGTATGGTGGAAGGTGATCTTGACAGACCTACTACACCACCAGAGGGTGAGGAAGAATTCACTGATGATGATGGGACAACTTACAGGTGGGATAGAGCTCTCAGGGCCTGGGTACCTCAGGATGATGCATTTTTTAAACATGAGCAATATGGGGCCGAAGAGATGACTTTCGTGCAAGAAGAAGAAGTCTTTCCACAGCTTCTAACTGATACCACTTGTACCTCCATCAAGGAAGAAGATGATTCTGTTCCTTCCACCTCCATCAAGGAGGAAGATTGTGTCACAAAAGAAGCTAATAGCAAAAGTGAGGACATGGAAACCAAACAGAACGGGAAGAGAAAGTTATGTGACAAGCAAGTTGAAAAAAAGGAAGCAAATAAAGGTCCTGATGGTTGGTTTGAACTAAAAATAAATACACATGTTTACATAACAGGGTTGCCGGAGGATGTTACTATTGATGAAGTTGTGGAAGTTTTTTCAAAATGTGGAATAATAAAGGAGGATCCTGAAACCAAAAAACCTCGTGTTAAGTTGTATGTTGATAAAGAGACAGGGAAGACGAAGGGTGATGCTTTAGTCACCTATCTGAAGGAACCCTCTGTTGCTCTGGCTATGCAAATTTTAGATGGCACGCCTCTTCGTCCCGGGGGGAAAATTCTTATGTCTGTTACTCAAGCTAAGTTTGAGCAAAAAGGTGATAAATTTGTATCAAAAAAAGTAGACAACAAGAAGAAAAAGAAGCTTAAAAAGGTTGAAGATAAGATACTCGGCTGGGGTGGCCGAGATGATGCAAAAATTTCAATTCCTGCAACTGTTGTTCTCCGTTTTATGTTCACACCTGCTGAAATGAGGACCGATGAAAATTTAGCTTCAGAAATAGAAGCAGATGTTAAGGAGGAAAGCACAAGGTTTGGTCCTGTGGATTCTGTTAAGGTCTGTGAAAACCATCCACAAGGTGTGGTTTTGATAAGATTCAAAGATAGGAAGGATGCTCAGAAATGTATAGAGTTGATGAACGGAAGATGGTTTGGCGGAAGACAAATTCACGCAAGCGAGGACGATGGTTTAGTGAACCATGCTTCGGTGAGGGATCTTGAAGCCGATGCTGTTCGCTTGGAGCAGTTTGGTTCAGAACTTGAGGCTGACTGACTGACTCTAAATGCGCCCAAGAAAGCTGTTGAATTTTTCTAATATAGCCGTACGCGCCTGTATGAATCCTTAGAGCATTCTGTACATTATTATTATTATTCATATTACATGGCCTTCCTAGTTAGTGTTGCACCTAAAACCTCACCTGCTGTAAAAGAATTTTTTCCCCTTTTCTTAACTATAACAAGTTTTCCCTTTCTTTGAAGGCTAATGCATTCTTGATGTAGACTAGGTTCAAAGCTACTTCGATTAAGGTACAACACTTTAGTTTTTGTACTTCTGAACAATTTAATATTTCCACTTTTGTATGTAACCTATTTATTTCCTTTATTTTAAAATTTGTAGCGATTGAAAATATGATTAGAGGAGTTGAATGGAATTTCTTACCAAGGTAGATCACTTAACTGATGGAATGTGTTTATAAATTATAATTACTAACTCCTTAAAGATAGGATGCTTGTGAGAGTGTATATTTGCACCAACACTTGGGAACTTTTTACACCAATTTTCTATACATACTCGTAAGTTAAATTTTTGGTGCCGTTGTTTTGGCACTGTTGTTGGGAAGTTCGATAAAATTTTCTTTTCTCAATTTGTTTTTATAGAGTTGCGAGTATAAGCTGCAAGGCAACTGCAGAGCAGCATGGGGAGTATAAGTTTAGGAGTGTATGAACGACAACTCTGGTTTGGAATTCCTACTTAATCTAGAATAGAAGGACAGATCG

Coding sequence (CDS)

ATGGACAACAATCCTTCTGGGAACCCTGAAACGGTTACTGAAGCTGGATGGTATATTCTTGGTGAAGATCAGCAACATGTTGGTCCATATGCATTTTCTGAATTGCGCGATCATTTTCTGAATGGGTATCTCATGGAAAGTACATTGGTCTGGTCTGAAGGACAAAGTGAATGGCATCCGTTATCGTCTATTCTTGGGTTGACAACGAAAGTATTTCAACAAGAATCTGATTTGTCAACTGCAGTTCCTGTCAACAACAACAATGGCGATGATGAGCTTGAGAAATATCAGAAGGAGGTTGGAGAAACAGAAACTACAATTGAAGCGTCAAGTCCTTCTAGTGGCAGGAATTTCAGTATGGTGGAAGGTGATCTTGACAGACCTACTACACCACCAGAGGGTGAGGAAGAATTCACTGATGATGATGGGACAACTTACAGGTGGGATAGAGCTCTCAGGGCCTGGGTACCTCAGGATGATGCATTTTTTAAACATGAGCAATATGGGGCCGAAGAGATGACTTTCGTGCAAGAAGAAGAAGTCTTTCCACAGCTTCTAACTGATACCACTTGTACCTCCATCAAGGAAGAAGATGATTCTGTTCCTTCCACCTCCATCAAGGAGGAAGATTGTGTCACAAAAGAAGCTAATAGCAAAAGTGAGGACATGGAAACCAAACAGAACGGGAAGAGAAAGTTATGTGACAAGCAAGTTGAAAAAAAGGAAGCAAATAAAGGTCCTGATGGTTGGTTTGAACTAAAAATAAATACACATGTTTACATAACAGGGTTGCCGGAGGATGTTACTATTGATGAAGTTGTGGAAGTTTTTTCAAAATGTGGAATAATAAAGGAGGATCCTGAAACCAAAAAACCTCGTGTTAAGTTGTATGTTGATAAAGAGACAGGGAAGACGAAGGGTGATGCTTTAGTCACCTATCTGAAGGAACCCTCTGTTGCTCTGGCTATGCAAATTTTAGATGGCACGCCTCTTCGTCCCGGGGGGAAAATTCTTATGTCTGTTACTCAAGCTAAGTTTGAGCAAAAAGGTGATAAATTTGTATCAAAAAAAGTAGACAACAAGAAGAAAAAGAAGCTTAAAAAGGTTGAAGATAAGATACTCGGCTGGGGTGGCCGAGATGATGCAAAAATTTCAATTCCTGCAACTGTTGTTCTCCGTTTTATGTTCACACCTGCTGAAATGAGGACCGATGAAAATTTAGCTTCAGAAATAGAAGCAGATGTTAAGGAGGAAAGCACAAGGTTTGGTCCTGTGGATTCTGTTAAGGTCTGTGAAAACCATCCACAAGGTGTGGTTTTGATAAGATTCAAAGATAGGAAGGATGCTCAGAAATGTATAGAGTTGATGAACGGAAGATGGTTTGGCGGAAGACAAATTCACGCAAGCGAGGACGATGGTTTAGTGAACCATGCTTCGGTGAGGGATCTTGAAGCCGATGCTGTTCGCTTGGAGCAGTTTGGTTCAGAACTTGAGGCTGACTGA

Protein sequence

MDNNPSGNPETVTEAGWYILGEDQQHVGPYAFSELRDHFLNGYLMESTLVWSEGQSEWHPLSSILGLTTKVFQQESDLSTAVPVNNNNGDDELEKYQKEVGETETTIEASSPSSGRNFSMVEGDLDRPTTPPEGEEEFTDDDGTTYRWDRALRAWVPQDDAFFKHEQYGAEEMTFVQEEEVFPQLLTDTTCTSIKEEDDSVPSTSIKEEDCVTKEANSKSEDMETKQNGKRKLCDKQVEKKEANKGPDGWFELKINTHVYITGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVDKETGKTKGDALVTYLKEPSVALAMQILDGTPLRPGGKILMSVTQAKFEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAKISIPATVVLRFMFTPAEMRTDENLASEIEADVKEESTRFGPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLVNHASVRDLEADAVRLEQFGSELEAD

Homology

[Close]

BLAST of Carg26078-RA vs. NCBI nr
Match: XP_022946463.1 (HIV Tat-specific factor 1 [Cucurbita moschata] >XP_022946467.1 HIV Tat-specific factor 1 [Cucurbita moschata])

HSP 1 Score: 936.8 bits (2420), Expect = 3.0e-269
Identity = 499/500 (99.80%), Postives = 499/500 (99.80%), Query Frame = 0


Query: 1   MDNNPSGNPETVTEAGWYILGEDQQHVGPYAFSELRDHFLNGYLMESTLVWSEGQSEWHP 60
           MDNNPSGNPETVTEAGWYILGEDQQHVGPYAFSELRDHFLNGYLMESTLVWSEGQSEWHP
Sbjct: 1   MDNNPSGNPETVTEAGWYILGEDQQHVGPYAFSELRDHFLNGYLMESTLVWSEGQSEWHP 60

Query: 61  LSSILGLTTKVFQQESDLSTAVPVNNNNGDDELEKYQKEVGETETTIEASSPSSGRNFSM 120
           LSSILGLTTKVFQQESDLSTAVPVNNNNGDDELEKYQKEVGETETTIEASSPSS RNFSM
Sbjct: 61  LSSILGLTTKVFQQESDLSTAVPVNNNNGDDELEKYQKEVGETETTIEASSPSSSRNFSM 120

Query: 121 VEGDLDRPTTPPEGEEEFTDDDGTTYRWDRALRAWVPQDDAFFKHEQYGAEEMTFVQEEE 180
           VEGDLDRPTTPPEGEEEFTDDDGTTYRWDRALRAWVPQDDAFFKHEQYGAEEMTFVQEEE
Sbjct: 121 VEGDLDRPTTPPEGEEEFTDDDGTTYRWDRALRAWVPQDDAFFKHEQYGAEEMTFVQEEE 180

Query: 181 VFPQLLTDTTCTSIKEEDDSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRKLCDKQVEK 240
           VFPQLLTDTTCTSIKEEDDSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRKLCDKQVEK
Sbjct: 181 VFPQLLTDTTCTSIKEEDDSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRKLCDKQVEK 240

Query: 241 KEANKGPDGWFELKINTHVYITGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVDK 300
           KEANKGPDGWFELKINTHVYITGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVDK
Sbjct: 241 KEANKGPDGWFELKINTHVYITGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVDK 300

Query: 301 ETGKTKGDALVTYLKEPSVALAMQILDGTPLRPGGKILMSVTQAKFEQKGDKFVSKKVDN 360
           ETGKTKGDALVTYLKEPSVALAMQILDGTPLRPGGKILMSVTQAKFEQKGDKFVSKKVDN
Sbjct: 301 ETGKTKGDALVTYLKEPSVALAMQILDGTPLRPGGKILMSVTQAKFEQKGDKFVSKKVDN 360

Query: 361 KKKKKLKKVEDKILGWGGRDDAKISIPATVVLRFMFTPAEMRTDENLASEIEADVKEEST 420
           KKKKKLKKVEDKILGWGGRDDAKISIPATVVLRFMFTPAEMRTDENLASEIEADVKEEST
Sbjct: 361 KKKKKLKKVEDKILGWGGRDDAKISIPATVVLRFMFTPAEMRTDENLASEIEADVKEEST 420

Query: 421 RFGPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLVNHASV 480
           RFGPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLVNHASV
Sbjct: 421 RFGPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLVNHASV 480

Query: 481 RDLEADAVRLEQFGSELEAD 501
           RDLEADAVRLEQFGSELEAD
Sbjct: 481 RDLEADAVRLEQFGSELEAD 500

[Close]

BLAST of Carg26078-RA vs. NCBI nr
Match: XP_022973332.1 (HIV Tat-specific factor 1 [Cucurbita maxima])

HSP 1 Score: 914.4 bits (2362), Expect = 1.6e-262
Identity = 487/500 (97.40%), Postives = 492/500 (98.40%), Query Frame = 0


Query: 1   MDNNPSGNPETVTEAGWYILGEDQQHVGPYAFSELRDHFLNGYLMESTLVWSEGQSEWHP 60
           MDNNP+GNPETVTE GWYILGEDQQHVGPYAFSELRDHFLNGYLMESTLVW EGQSEWHP
Sbjct: 1   MDNNPAGNPETVTEVGWYILGEDQQHVGPYAFSELRDHFLNGYLMESTLVWCEGQSEWHP 60

Query: 61  LSSILGLTTKVFQQESDLSTAVPVNNNNGDDELEKYQKEVGETETTIEASSPSSGRNFSM 120
           LSSILGLTTKVFQQESDLSTAVPVNNNNGDDELEKYQKE+GE+  TIE SSPS  RNF M
Sbjct: 61  LSSILGLTTKVFQQESDLSTAVPVNNNNGDDELEKYQKEIGESVATIEVSSPS--RNFGM 120

Query: 121 VEGDLDRPTTPPEGEEEFTDDDGTTYRWDRALRAWVPQDDAFFKHEQYGAEEMTFVQEEE 180
           VEGDLDRPTTPPEGEEEFTDDDGTTYRWDRALRAWVPQDDAFFKHEQYGAEEMTFVQE+E
Sbjct: 121 VEGDLDRPTTPPEGEEEFTDDDGTTYRWDRALRAWVPQDDAFFKHEQYGAEEMTFVQEDE 180

Query: 181 VFPQLLTDTTCTSIKEEDDSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRKLCDKQVEK 240
           +FPQLLTDTTCTSIKEEDDSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRKLCDKQVEK
Sbjct: 181 IFPQLLTDTTCTSIKEEDDSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRKLCDKQVEK 240

Query: 241 KEANKGPDGWFELKINTHVYITGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVDK 300
           KEANKGPDGWFELKINTHVYITGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVDK
Sbjct: 241 KEANKGPDGWFELKINTHVYITGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVDK 300

Query: 301 ETGKTKGDALVTYLKEPSVALAMQILDGTPLRPGGKILMSVTQAKFEQKGDKFVSKKVDN 360
           ETGKTKGDALVTYLKEPSVALAMQILDGTPLRPGGKILMSVTQAKFEQKGDKFVSKKVDN
Sbjct: 301 ETGKTKGDALVTYLKEPSVALAMQILDGTPLRPGGKILMSVTQAKFEQKGDKFVSKKVDN 360

Query: 361 KKKKKLKKVEDKILGWGGRDDAKISIPATVVLRFMFTPAEMRTDENLASEIEADVKEEST 420
           KKKKKLKKVEDKILGWGGRDDAKISIPATVVLRFMFTPAEMRTDENLASEIEADVKEEST
Sbjct: 361 KKKKKLKKVEDKILGWGGRDDAKISIPATVVLRFMFTPAEMRTDENLASEIEADVKEEST 420

Query: 421 RFGPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLVNHASV 480
           RFGPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLVNHASV
Sbjct: 421 RFGPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLVNHASV 480

Query: 481 RDLEADAVRLEQFGSELEAD 501
           RDLEADAVRLEQFGSELEAD
Sbjct: 481 RDLEADAVRLEQFGSELEAD 498

[Close]

BLAST of Carg26078-RA vs. NCBI nr
Match: XP_023521031.1 (HIV Tat-specific factor 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 913.7 bits (2360), Expect = 2.8e-262
Identity = 490/500 (98.00%), Postives = 493/500 (98.60%), Query Frame = 0


Query: 1   MDNNPSGNPETVTEAGWYILGEDQQHVGPYAFSELRDHFLNGYLMESTLVWSEGQSEWHP 60
           MDNNP+GNPETVTEAGWYILGEDQQHVGPYAFSELRDHFLNGYLMESTLVWSEGQSEWHP
Sbjct: 1   MDNNPAGNPETVTEAGWYILGEDQQHVGPYAFSELRDHFLNGYLMESTLVWSEGQSEWHP 60

Query: 61  LSSILGLTTKVFQQESDLSTAVPVNNNNGDDELEKYQKEVGETETTIEASSPSSGRNFSM 120
           LSSILGLTTKVFQQESDLSTAVPVNNNN DDELEKYQKEVGETE T+E SSPSS R F M
Sbjct: 61  LSSILGLTTKVFQQESDLSTAVPVNNNNVDDELEKYQKEVGETEATVEVSSPSS-RIFGM 120

Query: 121 VEGDLDRPTTPPEGEEEFTDDDGTTYRWDRALRAWVPQDDAFFKHEQYGAEEMTFVQEEE 180
           VEGDLDRPTTPPEGEEEFTDDDGTTYRWDRALRAWVPQDDAFFK+EQYGAEEMTFVQEEE
Sbjct: 121 VEGDLDRPTTPPEGEEEFTDDDGTTYRWDRALRAWVPQDDAFFKNEQYGAEEMTFVQEEE 180

Query: 181 VFPQLLTDTTCTSIKEEDDSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRKLCDKQVEK 240
           VFPQLLTDTTCTSIKEEDDSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRKLCDKQVEK
Sbjct: 181 VFPQLLTDTTCTSIKEEDDSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRKLCDKQVEK 240

Query: 241 KEANKGPDGWFELKINTHVYITGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVDK 300
           KEANKGPDGWFELKINTHVYITGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVDK
Sbjct: 241 KEANKGPDGWFELKINTHVYITGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVDK 300

Query: 301 ETGKTKGDALVTYLKEPSVALAMQILDGTPLRPGGKILMSVTQAKFEQKGDKFVSKKVDN 360
           ETGKTKGDALVTYLKEPSVALAMQILDGTPLRPGGKI MSVTQAKFEQKGDKFVSKKVDN
Sbjct: 301 ETGKTKGDALVTYLKEPSVALAMQILDGTPLRPGGKISMSVTQAKFEQKGDKFVSKKVDN 360

Query: 361 KKKKKLKKVEDKILGWGGRDDAKISIPATVVLRFMFTPAEMRTDENLASEIEADVKEEST 420
           KKKKKLKKVEDKILGWGGRDDAKISIPATVVLRFMFTPAEMRTDENLASEIEADVKEEST
Sbjct: 361 KKKKKLKKVEDKILGWGGRDDAKISIPATVVLRFMFTPAEMRTDENLASEIEADVKEEST 420

Query: 421 RFGPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLVNHASV 480
           RFGPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLVNHASV
Sbjct: 421 RFGPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLVNHASV 480

Query: 481 RDLEADAVRLEQFGSELEAD 501
           RDLEADAVRLEQFGSELEAD
Sbjct: 481 RDLEADAVRLEQFGSELEAD 499

[Close]

BLAST of Carg26078-RA vs. NCBI nr
Match: XP_008442163.1 (PREDICTED: splicing factor U2AF-associated protein 2 [Cucumis melo])

HSP 1 Score: 834.7 bits (2155), Expect = 1.6e-238
Identity = 419/500 (83.80%), Postives = 439/500 (87.80%), Query Frame = 0


Query: 1   MDNNPSGNPETVTEAGWYILGEDQQHVGPYAFSELRDHFLNGYLMESTLVWSEGQSEWHP 60
           MDNN  GN E VTEAGWYILGE+QQHVGPYAFSELR+HFLNGYL+ESTL WSEGQSEW P
Sbjct: 1   MDNNSVGNSEMVTEAGWYILGENQQHVGPYAFSELREHFLNGYLLESTLAWSEGQSEWQP 60

Query: 61  LSSILGLTTKVFQQESDLSTAVPVNNNNGDDELEKYQKEVGETETTIEASSPSSGRNFSM 120
           LSSI GLTTKV++Q+S+LSTAVP NNN  DDELEKYQKEVGETE T E S PS  RNF M
Sbjct: 61  LSSIPGLTTKVYEQDSNLSTAVPANNNE-DDELEKYQKEVGETEATAEVSGPSGSRNFGM 120

Query: 121 VEGDLDRPTTPPEGEEEFTDDDGTTYRWDRALRAWVPQDDAFFKHEQYGAEEMTFVQEEE 180
           VEGDL+RPTTPPEGEEEFTDDDGTTY+WDR LRAWVPQDDAFFKHEQY  E+MTF+QEEE
Sbjct: 121 VEGDLERPTTPPEGEEEFTDDDGTTYKWDRVLRAWVPQDDAFFKHEQYRPEDMTFMQEEE 180

Query: 181 VFPQLLTDTTCTSIKEEDDSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRKLCDKQVEK 240
           VFPQL  D  CTSIKEE DSV                            KRKL   QVEK
Sbjct: 181 VFPQLEADAPCTSIKEEGDSV-PSTSVEADHVTKETNGKSEEIETKKNVKRKLSGNQVEK 240

Query: 241 KEANKGPDGWFELKINTHVYITGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVDK 300
           KEANKGPDGWFELKINTHVY+TGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVD+
Sbjct: 241 KEANKGPDGWFELKINTHVYVTGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVDR 300

Query: 301 ETGKTKGDALVTYLKEPSVALAMQILDGTPLRPGGKILMSVTQAKFEQKGDKFVSKKVDN 360
           ETGK KGDALV+Y+KEPSVALAMQILDGTPLRPGGK+LMSVTQAKFEQKGDKFVSKKVDN
Sbjct: 301 ETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDN 360

Query: 361 KKKKKLKKVEDKILGWGGRDDAKISIPATVVLRFMFTPAEMRTDENLASEIEADVKEEST 420
           KKKKKLKKVEDKILGWGGRDDAK+SIPATV+LRFMFTPAEMR DENLASEIE DVKEEST
Sbjct: 361 KKKKKLKKVEDKILGWGGRDDAKVSIPATVILRFMFTPAEMRADENLASEIETDVKEEST 420

Query: 421 RFGPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLVNHASV 480
           +FGPVDSVKVCENHPQGVVLIRFKDR+DAQKCIELMNGRWFGGRQIHASEDDGLVNHA V
Sbjct: 421 KFGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWFGGRQIHASEDDGLVNHAMV 480

Query: 481 RDLEADAVRLEQFGSELEAD 501
           RDLEADA RLEQFGSELEAD
Sbjct: 481 RDLEADAARLEQFGSELEAD 498

[Close]

BLAST of Carg26078-RA vs. NCBI nr
Match: XP_011653887.1 (PREDICTED: splicing factor U2AF-associated protein 2 [Cucumis sativus] >XP_011653888.1 PREDICTED: splicing factor U2AF-associated protein 2 [Cucumis sativus])

HSP 1 Score: 827.4 bits (2136), Expect = 2.6e-236
Identity = 416/500 (83.20%), Postives = 438/500 (87.60%), Query Frame = 0


Query: 1   MDNNPSGNPETVTEAGWYILGEDQQHVGPYAFSELRDHFLNGYLMESTLVWSEGQSEWHP 60
           MDNN  GN E VTEAGWYILGE+QQHVGPYAFSELR+HFLNGYL+ESTL WSEGQSEW P
Sbjct: 1   MDNNSVGNLEMVTEAGWYILGENQQHVGPYAFSELREHFLNGYLLESTLAWSEGQSEWQP 60

Query: 61  LSSILGLTTKVFQQESDLSTAVPVNNNNGDDELEKYQKEVGETETTIEASSPSSGRNFSM 120
           LSSI GLTT+V+ Q+S+L T VP NNN+ DDELEKYQKEVGETE T + SSPS GRNF +
Sbjct: 61  LSSIPGLTTEVYGQDSNLPTTVPANNND-DDELEKYQKEVGETEATTKVSSPSGGRNFGL 120

Query: 121 VEGDLDRPTTPPEGEEEFTDDDGTTYRWDRALRAWVPQDDAFFKHEQYGAEEMTFVQEEE 180
           VEGDL+RPTTPPEGEEEFTDDDGT Y+WDR LRAWVPQDDAFFKHEQY  EEMTF+QEEE
Sbjct: 121 VEGDLERPTTPPEGEEEFTDDDGTPYKWDRVLRAWVPQDDAFFKHEQYRPEEMTFMQEEE 180

Query: 181 VFPQLLTDTTCTSIKEEDDSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRKLCDKQVEK 240
           VFPQL  D  CTSIKEE DSV                            KRKL   QVEK
Sbjct: 181 VFPQLDADAPCTSIKEEGDSV-PSTSIEADHITKETNGKSEETETKKNVKRKLSGNQVEK 240

Query: 241 KEANKGPDGWFELKINTHVYITGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVDK 300
           KEANKGPDGWFELKINTHVY+TGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVD+
Sbjct: 241 KEANKGPDGWFELKINTHVYVTGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVDR 300

Query: 301 ETGKTKGDALVTYLKEPSVALAMQILDGTPLRPGGKILMSVTQAKFEQKGDKFVSKKVDN 360
           ETGK KGDALV+Y+KEPSVALAMQILDGTPLRPGGK+LMSVTQAKFEQKGDKFVSKKVDN
Sbjct: 301 ETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDN 360

Query: 361 KKKKKLKKVEDKILGWGGRDDAKISIPATVVLRFMFTPAEMRTDENLASEIEADVKEEST 420
           KKKKKLKKVEDKILGWGGRDDAK+SIPATV+LRFMFTPAEMR DENLASEIE DVKEEST
Sbjct: 361 KKKKKLKKVEDKILGWGGRDDAKVSIPATVILRFMFTPAEMRADENLASEIETDVKEEST 420

Query: 421 RFGPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLVNHASV 480
           +FGPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGG+QIHASEDDGLVNHA V
Sbjct: 421 KFGPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGGKQIHASEDDGLVNHAMV 480

Query: 481 RDLEADAVRLEQFGSELEAD 501
           RDLEADA RLEQFGSELEAD
Sbjct: 481 RDLEADAARLEQFGSELEAD 498

[Close]

BLAST of Carg26078-RA vs. TAIR10
Match: AT5G16260.1 (RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 560.8 bits (1444), Expect = 8.2e-160
Identity = 290/516 (56.20%), Postives = 369/516 (71.51%), Query Frame = 0


Query: 5   PSGNPETV--TEAGWYILGEDQQHVGPYAFSELRDHFLNGYLMESTLVWSEGQSEWHPLS 64
           PS    TV  T+ GWYILGE+QQ++GPY FSEL +HF NGYL+E+TLVW++G+SEW PLS
Sbjct: 11  PSSTGATVAATDVGWYILGENQQNLGPYTFSELCNHFRNGYLLETTLVWADGRSEWQPLS 70

Query: 65  SILGLTTKVFQQE---SDLSTAVPVNNNNG---------------DDELEKYQKEVGETE 124
           +I  L +++   E     + ++  +N +N                +DE EK+Q+E+ + E
Sbjct: 71  AIPDLMSRISGAEIAYPAVGSSGLINGSNAGTRQEKQDYTASASTEDEFEKWQREIKDAE 130

Query: 125 TTIEASSPSSGRNFSMVEGDLDRPTTPPEGEEEFTDDDGTTYRWDRALRAWVPQDD-AFF 184
              E     S     +VE D +R ++PPEGE+EFTDDDGT Y+WDRA R WVPQDD    
Sbjct: 131 AEAERLKNGSVSGTELVEDDHERASSPPEGEDEFTDDDGTKYKWDRARRVWVPQDDPPLG 190

Query: 185 KHEQYGAEEMTFVQEEEVFPQLLTDTTCTSIKEEDDSVXXXXXXXXXXXXXXXXXXXXXX 244
             + YG EEMTF +E+EVFP +  +   TS+ ++D S                       
Sbjct: 191 SVDPYGLEEMTFAKEDEVFPTI--NILDTSVDKKDAS------KDDVAGKKEEDGSDETA 250

Query: 245 XXXXXXKRKLCDKQVEKKEANKGPDGWFELKINTHVYITGLPEDVTIDEVVEVFSKCGII 304
                 KRKL + + EKKE NK PD WFELK+N H+Y+ GLP+DVTI+EV EVFSKCGII
Sbjct: 251 EINSNGKRKLPEPETEKKEPNKPPDSWFELKVNPHIYVNGLPDDVTIEEVAEVFSKCGII 310

Query: 305 KEDPETKKPRVKLYVDKETGKTKGDALVTYLKEPSVALAMQILDGTPLRPGGKILMSVTQ 364
           KED +T KPR+KLY DK TGK KGDAL++Y+KEPSV LA++ILDG PLRP  K+LMSV++
Sbjct: 311 KED-DTGKPRIKLYSDKATGKLKGDALISYMKEPSVDLAIKILDGAPLRPADKLLMSVSR 370

Query: 365 AKFEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAKISIPATVVLRFMFTPAEMRT 424
           AKFEQKG++F++K+ DNKKKKKLKKVE K+LGWGG DD+K+SIPATVVLR+MF+PAE+  
Sbjct: 371 AKFEQKGERFITKQTDNKKKKKLKKVEQKLLGWGGTDDSKVSIPATVVLRYMFSPAELMA 430

Query: 425 DENLASEIEADVKEESTRFGPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGG 484
           DE+L +E+E DVKEES + GP DSVKVCE+HPQGVVL+RFKDR+DAQKCIE MNGRW+  
Sbjct: 431 DEDLVAELEEDVKEESLKHGPFDSVKVCEHHPQGVVLVRFKDRRDAQKCIEAMNGRWYAK 490

Query: 485 RQIHASEDDGLVNHASVRDLEADAVRLEQFGSELEA 500
           RQIHAS DDG VNHA+VRD + +A RL+QF +ELEA
Sbjct: 491 RQIHASLDDGSVNHATVRDFDLEAERLDQFAAELEA 517

[Close]

BLAST of Carg26078-RA vs. TAIR10
Match: AT1G50300.1 (TBP-associated factor 15)

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-07
Identity = 34/96 (35.42%), Postives = 50/96 (52.08%), Query Frame = 0


Query: 256 NTHVYITGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVDKETGKTKGDALVTYLK 315
           N  VY++ LP     + + + F   G++K D  T  P+V LY DKET + KGDA VTY +
Sbjct: 7   NGSVYVSNLPLGTDENMLADYFGTIGLLKRDKRTGTPKVWLYRDKETDEPKGDATVTY-E 66

Query: 316 EPSVALAMQILDGTPLRPGGKILMSVTQAKFEQKGD 352
           +P  ALA           G  I + + ++K +  GD
Sbjct: 67  DPHAALAAVEWFNNKDFHGNTIGVFMAESKNKNAGD 101

[Close]

BLAST of Carg26078-RA vs. TAIR10
Match: AT5G09880.1 (Splicing factor, CC1-like)

HSP 1 Score: 48.5 bits (114), Expect = 1.4e-05
Identity = 28/80 (35.00%), Postives = 45/80 (56.25%), Query Frame = 0


Query: 390 VVLRFMFTPAEMRTDENLASEIEADVKEESTRFGPVDSVKVCENHPQGVVLIRFKDRKDA 449
           ++L+ MF PA   T+ N   EI  DV +E +++GPV+ + V +N   G V +RF+  + A
Sbjct: 437 LLLKNMFDPA-TETEPNFDLEIRDDVADECSKYGPVNHIYVDKN-SAGFVYLRFQSVEAA 496

Query: 450 QKCIELMNGRWFGGRQIHAS 470
                 M+ RWF  + I A+
Sbjct: 497 AAAQRAMHMRWFAQKMISAT 514

[Close]

BLAST of Carg26078-RA vs. TAIR10
Match: AT1G71770.1 (poly(A)-binding protein 5)

HSP 1 Score: 44.7 bits (104), Expect = 2.0e-04
Identity = 43/216 (19.91%), Postives = 97/216 (44.91%), Query Frame = 0


Query: 257 THVYITGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVDKETGKTKGDALVTYLKE 316
           T+VY+  LP+++T DE+ + F K G I            + +  ++G ++    V ++  
Sbjct: 239 TNVYVKNLPKEITDDELKKTFGKYGDISS---------AVVMKDQSGNSRSFGFVNFVSP 298

Query: 317 PSVALAMQILDGTPLRPGGKILMSVTQAKFEQKGDKFVSKKVDNKKKKKLKKVEDKILGW 376
            + A+A++ ++G  L   G+ ++ V +A+ +   ++ + +K + ++  + +K++   L  
Sbjct: 299 EAAAVAVEKMNGISL---GEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYL 358

Query: 377 GGRDDAKISIPATVVLRFMFTPAEMRTDENLASEIEADVKEESTRFGPVDSVKVCENH-- 436
              DD+                     DE L        KE  + +G V S KV  N   
Sbjct: 359 KNLDDSV-------------------NDEKL--------KEMFSEYGNVTSCKVMMNSQG 415

Query: 437 -PQGVVLIRFKDRKDAQKCIELMNGRWFGGRQIHAS 470
             +G   + + + ++A   ++ MNG+  G + ++ +
Sbjct: 419 LSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVA 415

[Close]

BLAST of Carg26078-RA vs. TAIR10
Match: AT4G19610.1 (nucleotide binding;nucleic acid binding;RNA binding)

HSP 1 Score: 43.5 bits (101), Expect = 4.4e-04
Identity = 38/122 (31.15%), Postives = 60/122 (49.18%), Query Frame = 0


Query: 259 VYITGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVDKETGKTKGDALVTYLKEPS 318
           +++  LP   T +E++E FS  G I E        V L +DKET +++G A + YL    
Sbjct: 296 LFVRNLPYTATEEELMEHFSTFGKISE--------VHLVLDKETKRSRGIAYILYLIPEC 355

Query: 319 VALAMQILDGTPLRPGGKILMSVTQAKFEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGG 378
            A AM+ LD +  +  G+ L+ +  AK  +  DK V+   +  K  K K+ E +     G
Sbjct: 356 AARAMEELDNSSFQ--GR-LLHILPAKHRETSDKQVNDTSNLPKTFKQKREEQRKASEAG 406

Query: 379 RD 381
            D
Sbjct: 416 GD 406

[Close]

BLAST of Carg26078-RA vs. Swiss-Prot
Match: sp|O43719|HTSF1_HUMAN (HIV Tat-specific factor 1 OS=Homo sapiens OX=9606 GN=HTATSF1 PE=1 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 4.0e-39
Identity = 95/245 (38.78%), Postives = 146/245 (59.59%), Query Frame = 0


Query: 239 EKKEANKGPDGWFELK--INTHVYITGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKL 298
           +K E  K   GWF ++   NT+VY++GLP D+T+DE +++ SK GII  DP+T++ +VKL
Sbjct: 113 KKGEKRKAESGWFHVEEDRNTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKL 172

Query: 299 YVDKETGKTKGDALVTYLKEPSVALAMQILDGTPLRPGGKILMSVTQAKFEQKGDKFVSK 358
           Y D + G  KGD L  YLK  SV LA+++LD   +R G K+ + V  AKF+ KG+   SK
Sbjct: 173 YKDNQ-GNLKGDGLCCYLKRESVELALKLLDEDEIR-GYKLHVEV--AKFQLKGEYDASK 232

Query: 359 KVDN-KKKKKLKKVEDKILGWGGRDDA---KISIPATVVLRFMFTPAEMRTDENLASEIE 418
           K    K  KK   ++ K L W     A   ++     V+++ MF P +   D  + +EI 
Sbjct: 233 KKKKCKDYKKKLSMQQKQLDWRPERRAGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIR 292

Query: 419 ADVKEESTRFGPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGGRQIHASEDD 478
            D++ E ++FG +  + + + HP GV  + F+D ++A  CI+ ++GRWFGGRQI A   D
Sbjct: 293 EDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWD 352

[Close]

BLAST of Carg26078-RA vs. Swiss-Prot
Match: sp|Q5RB63|HTSF1_PONAB (HIV Tat-specific factor 1 homolog OS=Pongo abelii OX=9601 GN=HTATSF1 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 4.0e-39
Identity = 95/245 (38.78%), Postives = 146/245 (59.59%), Query Frame = 0


Query: 239 EKKEANKGPDGWFELK--INTHVYITGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKL 298
           +K E  K   GWF ++   NT+VY++GLP D+T+DE +++ SK GII  DP+T++ +VKL
Sbjct: 113 KKGEKRKAESGWFHVEEDRNTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKL 172

Query: 299 YVDKETGKTKGDALVTYLKEPSVALAMQILDGTPLRPGGKILMSVTQAKFEQKGDKFVSK 358
           Y D + G  KGD L  YLK  SV LA+++LD   +R G K+ + V  AKF+ KG+   SK
Sbjct: 173 YKDNQ-GNLKGDGLCCYLKRESVELALKLLDEDEIR-GYKLHVEV--AKFQLKGEYDASK 232

Query: 359 KVDN-KKKKKLKKVEDKILGWGGRDDA---KISIPATVVLRFMFTPAEMRTDENLASEIE 418
           K    K  KK   ++ K L W     A   ++     V+++ MF P +   D  + +EI 
Sbjct: 233 KKKKCKDYKKKLSMQQKQLDWRPERRAGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIR 292

Query: 419 ADVKEESTRFGPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGGRQIHASEDD 478
            D++ E ++FG +  + + + HP GV  + F+D ++A  CI+ ++GRWFGGRQI A   D
Sbjct: 293 EDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWD 352

[Close]

BLAST of Carg26078-RA vs. Swiss-Prot
Match: sp|Q8BGC0|HTSF1_MOUSE (HIV Tat-specific factor 1 homolog OS=Mus musculus OX=10090 GN=Htatsf1 PE=1 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 7.6e-38
Identity = 92/235 (39.15%), Postives = 143/235 (60.85%), Query Frame = 0


Query: 249 GWFELK--INTHVYITGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVDKETGKTK 308
           GWF ++   NT+VY++GLP D+T+DE +++ SK GII  DP+T++ +VKLY D + G  K
Sbjct: 124 GWFHVEEDRNTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKD-DQGNLK 183

Query: 309 GDALVTYLKEPSVALAMQILDGTPLRPGGKILMSVTQAKFEQKGDKFVSKKVDN-KKKKK 368
           GD L  YLK+ SV LA+++LD   +R G K+ + V  AKF+ KG+   SKK    K  KK
Sbjct: 184 GDGLCCYLKKESVELALKLLDEDEIR-GYKLHVEV--AKFQLKGEYDASKKKKKCKDYKK 243

Query: 369 LKKVEDKILGWGGRDDA---KISIPATVVLRFMFTPAEMRTDENLASEIEADVKEESTRF 428
              ++ K L W     A   ++     V+L+ MF P +   D  + +EI  D++ E ++F
Sbjct: 244 KLSLQQKQLDWRPERRAGPNRLRHERVVILKNMFHPMDFEDDPLVLNEIREDLRVECSKF 303

Query: 429 GPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLVNH 478
           G +  + + + HP GV  + F++ ++A  CI+ ++GRWFGGRQI A   DG  ++
Sbjct: 304 GQIRKLLLFDRHPDGVASVSFREPEEADHCIQTLDGRWFGGRQITAQAWDGTTDY 354

[Close]

BLAST of Carg26078-RA vs. Swiss-Prot
Match: sp|O43120|UAP2_SCHPO (Splicing factor U2AF-associated protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=uap2 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 5.1e-26
Identity = 91/274 (33.21%), Postives = 129/274 (47.08%), Query Frame = 0


Query: 239 EKKEANKGPDGWFELKINTHVYITGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYV 298
           E  EA+  P       IN  VYI GLP DVT+DE+ EVF KCG+I ++ +   PR+K+Y 
Sbjct: 98  ENSEASPAP------VINKAVYIQGLPLDVTVDEIEEVFKKCGVIAKNIDNGTPRIKIY- 157

Query: 299 DKETGKTKGDALVTYLKEPSVALAMQILDGTPLRPGGKILMSVTQAKFEQKGDKFVSKKV 358
             E G  KGDAL+ + +  SV LA Q+ D T  R G    M V +A  + K +K V+K V
Sbjct: 158 RTEDGTPKGDALIVFFRSESVELAEQLFDDTEFRYGSGQKMRVQKANIDYKKEKTVNKDV 217

Query: 359 DNKKKKKLKKVE----DKILGWGGRDD-----AKISIPATVVLRFMFTPAEMRTDENLAS 418
               KKK  ++      +I  W   D+      K      VVL+ +FT  E+     L  
Sbjct: 218 GGALKKKALRLRQQQMQQISSWDDVDEEVDDKRKKRFNKIVVLKHIFTLEELDKTPELLI 277

Query: 419 EIEADVKEESTRFGPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGGRQIHAS 478
           +++ D+ EE+ + G V +V +                         M GR+F GR + AS
Sbjct: 278 DLKDDITEEAEKCGRVTNVVLYXXXXXXXXXXXXXXXXXXXXXXXXMQGRYFDGRVVEAS 337

Query: 479 EDDGLVNHA-----SVRDLEADAVRLEQFGSELE 499
             DG V        ++ D E +  RLE+F   LE
Sbjct: 338 IYDGKVRFQKSGKHTLDDEEDEEKRLEKFADWLE 364

[Close]

BLAST of Carg26078-RA vs. Swiss-Prot
Match: sp|P53830|CUS2_YEAST (Cold sensitive U2 snRNA suppressor 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CUS2 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 8.8e-18
Identity = 81/245 (33.06%), Postives = 135/245 (55.10%), Query Frame = 0


Query: 256 NTHVYITGLPEDVTIDE-VVEVFSKCGIIKEDPETKKPRVKLYVDKETGKTKGDALVTYL 315
           NT +YI+GLP D T  E + E F K G+I+ + +  +P  KLYV+ + G  KGDAL+TY 
Sbjct: 44  NTSIYISGLPTDKTTKEGLTEQFCKYGMIRTNRD-GEPLCKLYVN-DKGAFKGDALITYS 103

Query: 316 KEPSVALAMQILDGTPLRPGGKILMSVTQAKFEQK-GDKFVSKKVDNKK-------KKKL 375
           KE SV LA+++++ +     GK  + V +A+F+ K GD    K+ D K+        K+L
Sbjct: 104 KEESVTLAIEMMNESIFL--GK-QIRVERAQFQNKEGDNMHGKENDLKEFNGPEPPIKRL 163

Query: 376 KKV----EDKILGWGGRDDAKISIPATVVLRFMFTPAEMRTDENLASEIEADVKEESTRF 435
           KK     E +++ +   D++      TV+   +F   +  T++++ ++I+ D+ E     
Sbjct: 164 KKAKSEGEGEVIDYND-DESLAKADRTVIFANVFNIYKSYTNDDI-NDIQEDLLEGCEEI 223

Query: 436 GPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLVNHASVRD 488
           G VDS+ V  N  +G   + FK+ K A +C ++M GR+F G+++ A    G  N +S  D
Sbjct: 224 GQVDSISVSPN--KGEATVVFKNNKVALQCCKIMTGRYFDGQKLLAF-ISGDENTSSTSD 278

[Close]

BLAST of Carg26078-RA vs. TrEMBL
Match: tr|A0A1S3B523|A0A1S3B523_CUCME (splicing factor U2AF-associated protein 2 OS=Cucumis melo OX=3656 GN=LOC103486099 PE=4 SV=1)

HSP 1 Score: 834.7 bits (2155), Expect = 1.1e-238
Identity = 419/500 (83.80%), Postives = 439/500 (87.80%), Query Frame = 0


Query: 1   MDNNPSGNPETVTEAGWYILGEDQQHVGPYAFSELRDHFLNGYLMESTLVWSEGQSEWHP 60
           MDNN  GN E VTEAGWYILGE+QQHVGPYAFSELR+HFLNGYL+ESTL WSEGQSEW P
Sbjct: 1   MDNNSVGNSEMVTEAGWYILGENQQHVGPYAFSELREHFLNGYLLESTLAWSEGQSEWQP 60

Query: 61  LSSILGLTTKVFQQESDLSTAVPVNNNNGDDELEKYQKEVGETETTIEASSPSSGRNFSM 120
           LSSI GLTTKV++Q+S+LSTAVP NNN  DDELEKYQKEVGETE T E S PS  RNF M
Sbjct: 61  LSSIPGLTTKVYEQDSNLSTAVPANNNE-DDELEKYQKEVGETEATAEVSGPSGSRNFGM 120

Query: 121 VEGDLDRPTTPPEGEEEFTDDDGTTYRWDRALRAWVPQDDAFFKHEQYGAEEMTFVQEEE 180
           VEGDL+RPTTPPEGEEEFTDDDGTTY+WDR LRAWVPQDDAFFKHEQY  E+MTF+QEEE
Sbjct: 121 VEGDLERPTTPPEGEEEFTDDDGTTYKWDRVLRAWVPQDDAFFKHEQYRPEDMTFMQEEE 180

Query: 181 VFPQLLTDTTCTSIKEEDDSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRKLCDKQVEK 240
           VFPQL  D  CTSIKEE DSV                            KRKL   QVEK
Sbjct: 181 VFPQLEADAPCTSIKEEGDSV-PSTSVEADHVTKETNGKSEEIETKKNVKRKLSGNQVEK 240

Query: 241 KEANKGPDGWFELKINTHVYITGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVDK 300
           KEANKGPDGWFELKINTHVY+TGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVD+
Sbjct: 241 KEANKGPDGWFELKINTHVYVTGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVDR 300

Query: 301 ETGKTKGDALVTYLKEPSVALAMQILDGTPLRPGGKILMSVTQAKFEQKGDKFVSKKVDN 360
           ETGK KGDALV+Y+KEPSVALAMQILDGTPLRPGGK+LMSVTQAKFEQKGDKFVSKKVDN
Sbjct: 301 ETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDN 360

Query: 361 KKKKKLKKVEDKILGWGGRDDAKISIPATVVLRFMFTPAEMRTDENLASEIEADVKEEST 420
           KKKKKLKKVEDKILGWGGRDDAK+SIPATV+LRFMFTPAEMR DENLASEIE DVKEEST
Sbjct: 361 KKKKKLKKVEDKILGWGGRDDAKVSIPATVILRFMFTPAEMRADENLASEIETDVKEEST 420

Query: 421 RFGPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLVNHASV 480
           +FGPVDSVKVCENHPQGVVLIRFKDR+DAQKCIELMNGRWFGGRQIHASEDDGLVNHA V
Sbjct: 421 KFGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWFGGRQIHASEDDGLVNHAMV 480

Query: 481 RDLEADAVRLEQFGSELEAD 501
           RDLEADA RLEQFGSELEAD
Sbjct: 481 RDLEADAARLEQFGSELEAD 498

[Close]

BLAST of Carg26078-RA vs. TrEMBL
Match: tr|A0A0A0KZ32|A0A0A0KZ32_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G491190 PE=4 SV=1)

HSP 1 Score: 827.4 bits (2136), Expect = 1.7e-236
Identity = 416/500 (83.20%), Postives = 438/500 (87.60%), Query Frame = 0


Query: 1   MDNNPSGNPETVTEAGWYILGEDQQHVGPYAFSELRDHFLNGYLMESTLVWSEGQSEWHP 60
           MDNN  GN E VTEAGWYILGE+QQHVGPYAFSELR+HFLNGYL+ESTL WSEGQSEW P
Sbjct: 3   MDNNSVGNLEMVTEAGWYILGENQQHVGPYAFSELREHFLNGYLLESTLAWSEGQSEWQP 62

Query: 61  LSSILGLTTKVFQQESDLSTAVPVNNNNGDDELEKYQKEVGETETTIEASSPSSGRNFSM 120
           LSSI GLTT+V+ Q+S+L T VP NNN+ DDELEKYQKEVGETE T + SSPS GRNF +
Sbjct: 63  LSSIPGLTTEVYGQDSNLPTTVPANNND-DDELEKYQKEVGETEATTKVSSPSGGRNFGL 122

Query: 121 VEGDLDRPTTPPEGEEEFTDDDGTTYRWDRALRAWVPQDDAFFKHEQYGAEEMTFVQEEE 180
           VEGDL+RPTTPPEGEEEFTDDDGT Y+WDR LRAWVPQDDAFFKHEQY  EEMTF+QEEE
Sbjct: 123 VEGDLERPTTPPEGEEEFTDDDGTPYKWDRVLRAWVPQDDAFFKHEQYRPEEMTFMQEEE 182

Query: 181 VFPQLLTDTTCTSIKEEDDSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRKLCDKQVEK 240
           VFPQL  D  CTSIKEE DSV                            KRKL   QVEK
Sbjct: 183 VFPQLDADAPCTSIKEEGDSV-PSTSIEADHITKETNGKSEETETKKNVKRKLSGNQVEK 242

Query: 241 KEANKGPDGWFELKINTHVYITGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVDK 300
           KEANKGPDGWFELKINTHVY+TGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVD+
Sbjct: 243 KEANKGPDGWFELKINTHVYVTGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVDR 302

Query: 301 ETGKTKGDALVTYLKEPSVALAMQILDGTPLRPGGKILMSVTQAKFEQKGDKFVSKKVDN 360
           ETGK KGDALV+Y+KEPSVALAMQILDGTPLRPGGK+LMSVTQAKFEQKGDKFVSKKVDN
Sbjct: 303 ETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDN 362

Query: 361 KKKKKLKKVEDKILGWGGRDDAKISIPATVVLRFMFTPAEMRTDENLASEIEADVKEEST 420
           KKKKKLKKVEDKILGWGGRDDAK+SIPATV+LRFMFTPAEMR DENLASEIE DVKEEST
Sbjct: 363 KKKKKLKKVEDKILGWGGRDDAKVSIPATVILRFMFTPAEMRADENLASEIETDVKEEST 422

Query: 421 RFGPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLVNHASV 480
           +FGPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGG+QIHASEDDGLVNHA V
Sbjct: 423 KFGPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGGKQIHASEDDGLVNHAMV 482

Query: 481 RDLEADAVRLEQFGSELEAD 501
           RDLEADA RLEQFGSELEAD
Sbjct: 483 RDLEADAARLEQFGSELEAD 500

[Close]

BLAST of Carg26078-RA vs. TrEMBL
Match: tr|A0A151U5M3|A0A151U5M3_CAJCA (HIV Tat-specific factor 1 isogeny OS=Cajanus cajan OX=3821 GN=KK1_007243 PE=4 SV=1)

HSP 1 Score: 672.2 bits (1733), Expect = 9.3e-190
Identity = 343/496 (69.15%), Postives = 389/496 (78.43%), Query Frame = 0


Query: 10  ETVTEAGWYILGEDQQHVGPYAFSELRDHFLNGYLMESTLVWSEGQSEWHPLSSILGLTT 69
           +TVTEAGWY+LGEDQQ VGPYAFSELR+HFLNGYL E+T VWSEG+SEW PLSS+  L T
Sbjct: 21  QTVTEAGWYVLGEDQQQVGPYAFSELREHFLNGYLSENTFVWSEGRSEWQPLSSVSDLWT 80

Query: 70  KVFQQESDLSTAVP--VNNNNGDDELEKYQKEVGETETTIEASS---PSSGRNFSMVEGD 129
           ++ QQ  D STAV   V +    DE E++QKE+ E E  +E S     S     S+   D
Sbjct: 81  QINQQGPDSSTAVTCYVVSAQDVDEFERWQKEIQEAEAQVEGSEFGIVSGDVGGSVAGAD 140

Query: 130 LDRPTTPPEGEEEFTDDDGTTYRWDRALRAWVPQDDAFFKHEQYGAEEMTFVQEEEVFPQ 189
            +RP+TPPEGEEEFTDDDGT Y+WDR LRAWVPQ+      + YG EEMTF+ EEEVFP 
Sbjct: 141 FERPSTPPEGEEEFTDDDGTVYKWDRNLRAWVPQEYPTGSTDPYGVEEMTFLLEEEVFPT 200

Query: 190 LLTDTTCTSIKEEDDSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRKLCDKQVEKKEAN 249
           +    +  S K ED S                             KRKL DKQ +KKEAN
Sbjct: 201 I--PDSDASEKLEDSS----KLFVSAPSLKEEVNEEKNTDVVADGKRKLSDKQTDKKEAN 260

Query: 250 KGPDGWFELKINTHVYITGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVDKETGK 309
           K PD WFELK+NTHVY+TGLPEDVT+DE+VEVFSKCGIIKEDPETK+PRVKLYVDKETG+
Sbjct: 261 KAPDSWFELKVNTHVYVTGLPEDVTVDEIVEVFSKCGIIKEDPETKRPRVKLYVDKETGR 320

Query: 310 TKGDALVTYLKEPSVALAMQILDGTPLRPGGKILMSVTQAKFEQKGDKFVSKKVDNKKKK 369
            KGDALVTYLKEPSVALA+QILDGTPLRPGGKI MSV+QAKFEQKGDKFVSK+VDNKKKK
Sbjct: 321 IKGDALVTYLKEPSVALALQILDGTPLRPGGKIPMSVSQAKFEQKGDKFVSKQVDNKKKK 380

Query: 370 KLKKVEDKILGWGGRDDAKISIPATVVLRFMFTPAEMRTDENLASEIEADVKEESTRFGP 429
           KLK+VE+K+LGWGGRDDAK+SIPATV+LR MFTP EMR DENL  E+E DVKEE T+ GP
Sbjct: 381 KLKRVEEKMLGWGGRDDAKVSIPATVILRHMFTPVEMRADENLRLELEEDVKEECTKLGP 440

Query: 430 VDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLVNHASVRDLE 489
           VDSVK+CENHPQGVVL++FKDR+DAQKCIELMNGRWFGGRQIHASEDDG VNHA VRDL+
Sbjct: 441 VDSVKICENHPQGVVLVKFKDRRDAQKCIELMNGRWFGGRQIHASEDDGSVNHALVRDLD 500

Query: 490 ADAVRLEQFGSELEAD 501
            DA+RLEQFG+ELE D
Sbjct: 501 GDAIRLEQFGAELEGD 510

[Close]

BLAST of Carg26078-RA vs. TrEMBL
Match: tr|A0A1S3UY48|A0A1S3UY48_VIGRR (splicing factor U2AF-associated protein 2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106769749 PE=4 SV=1)

HSP 1 Score: 668.7 bits (1724), Expect = 1.0e-188
Identity = 340/494 (68.83%), Postives = 387/494 (78.34%), Query Frame = 0


Query: 10  ETVTEAGWYILGEDQQHVGPYAFSELRDHFLNGYLMESTLVWSEGQSEWHPLSSILGLTT 69
           E VTE GWY+LGEDQQ VGPYAFSELR+HFLNGYL E+T VWSEG+SEW PLSS+  L T
Sbjct: 19  EKVTEVGWYVLGEDQQQVGPYAFSELREHFLNGYLSENTFVWSEGRSEWQPLSSVSDLWT 78

Query: 70  KVFQQESDLSTAVPVNNNNGDDELEKYQKEVGETETTIEAS---SPSSGRNFSMVEGDLD 129
           ++ QQ  D STAV  ++    DE E+++KE+ E E  +E S   S S     +    D +
Sbjct: 79  QINQQGLDSSTAVSAHD---VDEFERWEKEIKEAEAQVEGSDFGSFSGNVGGTAAGEDSE 138

Query: 130 RPTTPPEGEEEFTDDDGTTYRWDRALRAWVPQDDAFFKHEQYGAEEMTFVQEEEVFPQLL 189
           RP+TPPEGEEEFTDDDGT Y+WDR LRAWVPQ+      E YG E+MTF+QEEEVFP   
Sbjct: 139 RPSTPPEGEEEFTDDDGTVYKWDRNLRAWVPQEYPTGSTEPYGVEDMTFLQEEEVFP--- 198

Query: 190 TDTTCTSIKEEDDSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRKLCDKQVEKKEANKG 249
           T T   + ++ +DS                             KRKL D+Q +KKEANK 
Sbjct: 199 TITNSDASEKIEDSSELVISDPSLKEEANETNETNNASVVAGGKRKLSDQQTDKKEANKP 258

Query: 250 PDGWFELKINTHVYITGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVDKETGKTK 309
           PD WFELKINTHVY+ GLPEDVT DE+VEVFSKCGIIKEDPETK+PRVKLYVDKETG+ K
Sbjct: 259 PDSWFELKINTHVYVNGLPEDVTTDEIVEVFSKCGIIKEDPETKRPRVKLYVDKETGRKK 318

Query: 310 GDALVTYLKEPSVALAMQILDGTPLRPGGKILMSVTQAKFEQKGDKFVSKKVDNKKKKKL 369
           GDALVTYLKEPSVALA+QILDG P RPGGKI MSV+QAKFEQKGDKFVSK+VDNKKKKKL
Sbjct: 319 GDALVTYLKEPSVALAIQILDGAPFRPGGKIPMSVSQAKFEQKGDKFVSKQVDNKKKKKL 378

Query: 370 KKVEDKILGWGGRDDAKISIPATVVLRFMFTPAEMRTDENLASEIEADVKEESTRFGPVD 429
           K+VEDK+LGWGGRDDAK+SIPATV+LRFMF+PAEMR DENL  E+E DVKEE T+ GPVD
Sbjct: 379 KRVEDKMLGWGGRDDAKVSIPATVILRFMFSPAEMRADENLRLELEEDVKEECTKLGPVD 438

Query: 430 SVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLVNHASVRDLEAD 489
           SVK+CENHPQGVVL++FKDRKDAQKCIELMNGRWFGGRQIHASEDDG VNHA VRDL+ D
Sbjct: 439 SVKICENHPQGVVLVKFKDRKDAQKCIELMNGRWFGGRQIHASEDDGSVNHALVRDLQED 498

Query: 490 AVRLEQFGSELEAD 501
           A+RLEQFG+ELE D
Sbjct: 499 AIRLEQFGAELEGD 506

[Close]

BLAST of Carg26078-RA vs. TrEMBL
Match: tr|A0A2P4KE55|A0A2P4KE55_QUESU (Hiv tat-specific factor 1 like OS=Quercus suber OX=58331 GN=CFP56_38690 PE=4 SV=1)

HSP 1 Score: 667.9 bits (1722), Expect = 1.7e-188
Identity = 341/501 (68.06%), Postives = 391/501 (78.04%), Query Frame = 0


Query: 7   GNPETVTEAGWYILGEDQQHVGPYAFSELRDHFLNGYLMESTLVWSEGQSEWHPLSSILG 66
           G+ ET+TE GWYILG++QQ+VGPYAFSELR+HF+NGYL ESTLVW+EG+SEW PLSSI G
Sbjct: 81  GDYETITEVGWYILGDNQQNVGPYAFSELREHFVNGYLSESTLVWAEGRSEWQPLSSIPG 140

Query: 67  LTTKVFQQESDLSTAVPVNNNNGDDELEKYQKEVGETETTIEASSPSSGRNF-------S 126
           L T + QQ +  ST +    ++ DDE EK+Q+ V E E    A +      F        
Sbjct: 141 LLTGISQQGAGYSTTL----HSNDDEYEKWQEVVREAEAAAAAEADGLKSEFLSGNVGGD 200

Query: 127 MVEGDLDRPTTPPEGEEEFTDDDGTTYRWDRALRAWVPQDDAFFKHEQYGAEEMTFVQEE 186
             E DLDRP+TPPEGEEEFTDDDGT Y+WDR LRAWVPQDD   + E YG EEMTF+QEE
Sbjct: 201 SGEFDLDRPSTPPEGEEEFTDDDGTVYKWDRGLRAWVPQDDTLSRSELYGPEEMTFLQEE 260

Query: 187 EVFPQLLTDTTCTSIKEEDDSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRKLCDKQVE 246
           EVFP      +   +KE +++V                            KRKL DK+ E
Sbjct: 261 EVFPNF--SVSDAPVKEVNETV----ITSDAPGKEEVNDASEILGTMQNGKRKLLDKEAE 320

Query: 247 KKEANKGPDGWFELKINTHVYITGLPEDVTIDEVVEVFSKCGIIKEDPETKKPRVKLYVD 306
           KKEANK PD WFELK+NTHVY+TGLPEDVTIDEVVEVFSKCGIIKEDPETK+PRVKLYVD
Sbjct: 321 KKEANKPPDSWFELKVNTHVYVTGLPEDVTIDEVVEVFSKCGIIKEDPETKRPRVKLYVD 380

Query: 307 KETGKTKGDALVTYLKEPSVALAMQILDGTPLRPGGKILMSVTQAKFEQKGDKFVSKKVD 366
           KETG+ KGDALVTYLKEPSVALA+QILDG PLRP GK+ MSVT AKFEQKGDKF +K+VD
Sbjct: 381 KETGRKKGDALVTYLKEPSVALAVQILDGAPLRPDGKVPMSVTLAKFEQKGDKFRAKQVD 440

Query: 367 NKKKKKLKKVEDKILGWGGRDDAKISIPATVVLRFMFTPAEMRTDENLASEIEADVKEES 426
           NKKKKKLKK E+++LGW GRDDAK+SIPATVVLR+MFTP EMR DENL S++EADVKEE 
Sbjct: 441 NKKKKKLKKAEERMLGWAGRDDAKVSIPATVVLRYMFTPTEMRADENLHSDLEADVKEEC 500

Query: 427 TRFGPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLVNHAS 486
           ++ GP+D VKVCENHPQGVVL++FKDRKDAQKCIE MNGRWFGGRQIHASEDDGLVNHA 
Sbjct: 501 SKLGPLDLVKVCENHPQGVVLVKFKDRKDAQKCIETMNGRWFGGRQIHASEDDGLVNHAL 560

Query: 487 VRDLEADAVRLEQFGSELEAD 501
           VR+L+ DAVRLEQFG+ELEAD
Sbjct: 561 VRNLDEDAVRLEQFGAELEAD 571

The following BLAST results are available for this feature:

BLAST of Carg26078-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946463.1	3.0e-269	99.80	HIV Tat-specific factor 1 [Cucurbita moschata] >XP_022946467.1 HIV Tat-specific ...	[more]
XP_022973332.1	1.6e-262	97.40	HIV Tat-specific factor 1 [Cucurbita maxima]	[more]
XP_023521031.1	2.8e-262	98.00	HIV Tat-specific factor 1 [Cucurbita pepo subsp. pepo]	[more]
XP_008442163.1	1.6e-238	83.80	PREDICTED: splicing factor U2AF-associated protein 2 [Cucumis melo]	[more]
XP_011653887.1	2.6e-236	83.20	PREDICTED: splicing factor U2AF-associated protein 2 [Cucumis sativus] >XP_01165...	[more]

BLAST of Carg26078-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16260.1	8.2e-160	56.20	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G50300.1	2.5e-07	35.42	TBP-associated factor 15	[more]
AT5G09880.1	1.4e-05	35.00	Splicing factor, CC1-like	[more]
AT1G71770.1	2.0e-04	19.91	poly(A)-binding protein 5	[more]
AT4G19610.1	4.4e-04	31.15	nucleotide binding;nucleic acid binding;RNA binding	[more]

BLAST of Carg26078-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O43719\|HTSF1_HUMAN	4.0e-39	38.78	HIV Tat-specific factor 1 OS=Homo sapiens OX=9606 GN=HTATSF1 PE=1 SV=1	[more]
sp\|Q5RB63\|HTSF1_PONAB	4.0e-39	38.78	HIV Tat-specific factor 1 homolog OS=Pongo abelii OX=9601 GN=HTATSF1 PE=2 SV=1	[more]
sp\|Q8BGC0\|HTSF1_MOUSE	7.6e-38	39.15	HIV Tat-specific factor 1 homolog OS=Mus musculus OX=10090 GN=Htatsf1 PE=1 SV=1	[more]
sp\|O43120\|UAP2_SCHPO	5.1e-26	33.21	Splicing factor U2AF-associated protein 2 OS=Schizosaccharomyces pombe (strain 9...	[more]
sp\|P53830\|CUS2_YEAST	8.8e-18	33.06	Cold sensitive U2 snRNA suppressor 2 OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Carg26078-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B523\|A0A1S3B523_CUCME	1.1e-238	83.80	splicing factor U2AF-associated protein 2 OS=Cucumis melo OX=3656 GN=LOC10348609...	[more]
tr\|A0A0A0KZ32\|A0A0A0KZ32_CUCSA	1.7e-236	83.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G491190 PE=4 SV=1	[more]
tr\|A0A151U5M3\|A0A151U5M3_CAJCA	9.3e-190	69.15	HIV Tat-specific factor 1 isogeny OS=Cajanus cajan OX=3821 GN=KK1_007243 PE=4 SV...	[more]
tr\|A0A1S3UY48\|A0A1S3UY48_VIGRR	1.0e-188	68.83	splicing factor U2AF-associated protein 2 OS=Vigna radiata var. radiata OX=3916 ...	[more]
tr\|A0A2P4KE55\|A0A2P4KE55_QUESU	1.7e-188	68.06	Hiv tat-specific factor 1 like OS=Quercus suber OX=58331 GN=CFP56_38690 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0000398	mRNA splicing, via spliceosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR035445	GYF-like_dom_sf
IPR034392	TatSF1-like_RRM1
IPR034393	TatSF1-like
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR025640	DUF4339
IPR000504	RRM_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg26078	Carg26078	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26078-RA.three_prime_UTR.1	Carg26078-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26078-RA.CDS.13	Carg26078-RA.CDS.13	CDS
Carg26078-RA.CDS.12	Carg26078-RA.CDS.12	CDS
Carg26078-RA.CDS.11	Carg26078-RA.CDS.11	CDS
Carg26078-RA.CDS.10	Carg26078-RA.CDS.10	CDS
Carg26078-RA.CDS.9	Carg26078-RA.CDS.9	CDS
Carg26078-RA.CDS.8	Carg26078-RA.CDS.8	CDS
Carg26078-RA.CDS.7	Carg26078-RA.CDS.7	CDS
Carg26078-RA.CDS.6	Carg26078-RA.CDS.6	CDS
Carg26078-RA.CDS.5	Carg26078-RA.CDS.5	CDS
Carg26078-RA.CDS.4	Carg26078-RA.CDS.4	CDS
Carg26078-RA.CDS.3	Carg26078-RA.CDS.3	CDS
Carg26078-RA.CDS.2	Carg26078-RA.CDS.2	CDS
Carg26078-RA.CDS.1	Carg26078-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26078-RA.five_prime_UTR.2	Carg26078-RA.five_prime_UTR.2	five_prime_UTR
Carg26078-RA.five_prime_UTR.1	Carg26078-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26078-RA.exon.14	Carg26078-RA.exon.14	exon
Carg26078-RA.exon.13	Carg26078-RA.exon.13	exon
Carg26078-RA.exon.12	Carg26078-RA.exon.12	exon
Carg26078-RA.exon.11	Carg26078-RA.exon.11	exon
Carg26078-RA.exon.10	Carg26078-RA.exon.10	exon
Carg26078-RA.exon.9	Carg26078-RA.exon.9	exon
Carg26078-RA.exon.8	Carg26078-RA.exon.8	exon
Carg26078-RA.exon.7	Carg26078-RA.exon.7	exon
Carg26078-RA.exon.6	Carg26078-RA.exon.6	exon
Carg26078-RA.exon.5	Carg26078-RA.exon.5	exon
Carg26078-RA.exon.4	Carg26078-RA.exon.4	exon
Carg26078-RA.exon.3	Carg26078-RA.exon.3	exon
Carg26078-RA.exon.2	Carg26078-RA.exon.2	exon
Carg26078-RA.exon.1	Carg26078-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg26078-RA	Carg26078-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 258..341 e-value: 1.7E-8 score: 44.2 coord: 389..469 e-value: 2.8E-5 score: 33.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 412..467 e-value: 1.7E-8 score: 34.1 coord: 259..331 e-value: 9.7E-8 score: 31.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 388..473 score: 10.121
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 257..344 score: 11.639
IPR025640	Domain of unknown function DUF4339	PFAM	PF14237	DUF4339	coord: 17..61 e-value: 2.4E-13 score: 49.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 387..478 e-value: 3.6E-25 score: 90.0
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 256..342 e-value: 2.1E-18 score: 68.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..233
None	No IPR available	CDD	cd12285	RRM3_RBM39_like	coord: 387..472 e-value: 3.35393E-35 score: 125.735
IPR034393	TatSF1-like	PANTHER	PTHR15608	SPLICING FACTOR U2AF-ASSOCIATED PROTEIN 2	coord: 76..499
IPR034392	TatSF1-like, RNA recognition motif 1	CDD	cd12281	RRM1_TatSF1_like	coord: 256..350 e-value: 7.48092E-48 score: 160.777
IPR035445	GYF-like domain superfamily	SUPERFAMILY	SSF55277	GYF domain	coord: 8..68
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 251..335
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 385..469