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The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGATGAGAGCCCATGAGCTCTTGAATGAGCTCTTGAATGAGATGGTCAGGGAACACCTTGCACCTAATGTAATCACCATAAATACTTTAGTCGATGGAATGTGCAAGCTTGGTAGAATAAGCACTGCAGTTGAGTTCTTCAGGGAAATGCAGCAGAAGGGCTTGAAAGGAAACTCTGTTACTTACACGGTGTCCATTAATGCGTTTTGCAAAGTCGACGATATCGATAAGGCGATGAAATTTTTGGATGAAATGTCCAAAGCTGGACGTTATCCTGATGCCATTGTCTATTATACTTTGATATGTGGCTTAGCCCGAGCTGGAAGGTTGGATGATGCAAGCTTTATTATATCGAAGTTGAAAGAGGTTATGTACCTAAACTAGTTAAACTACGTTCATTAGCGTAAATGTATGTATCATATGATGTACATACTATACTTCCTGAGCCTCTCATACACAATTCTTAGGAATCTGTTGTTGCTGAATGCATTATACCCAAACAGCCAAAGTATTGTCATCAATTCTTTACGATGTATTATTTTAGATCCACCGCTAAAAATTCAGGCCAATTGTGAGCTTTAGCGTTTAAAGATTACGTTGAAGTTTGCTCTTACATCATTTCAAGCTTAACAATACTAAACTTTTCGTATATCATATATTTCATTCTGACCCTCCTTAGGTTTTCTCCGTTTTTCGGACCTATGCTCTAGAAGCTATTATGCCTCGGGTTGAACCAAAAGAATAA mRNA sequence ATGATGAGAGCCCATGAGCTCTTGAATGAGCTCTTGAATGAGATGGTCAGGGAACACCTTGCACCTAATGTAATCACCATAAATACTTTAGTCGATGGAATGTGCAAGCTTGGTAGAATAAGCACTGCAGTTGAGTTCTTCAGGGAAATGCAGCAGAAGGGCTTGAAAGGAAACTCTGTTACTTACACGGTGTCCATTAATGCGTTTTGCAAAGTCGACGATATCGATAAGGCGATGAAATTTTTGGATGAAATGTCCAAAGCTGGACGTTATCCTGATGCCATTGTCTATTATACTTTGATATGTGGCTTAGCCCGAGCTGGAAGGTTGGATGATGCAAGCTTTATTATATCGAAGTTGAAAGAGGTTTTCTCCGTTTTTCGGACCTATGCTCTAGAAGCTATTATGCCTCGGGTTGAACCAAAAGAATAA Coding sequence (CDS) ATGATGAGAGCCCATGAGCTCTTGAATGAGCTCTTGAATGAGATGGTCAGGGAACACCTTGCACCTAATGTAATCACCATAAATACTTTAGTCGATGGAATGTGCAAGCTTGGTAGAATAAGCACTGCAGTTGAGTTCTTCAGGGAAATGCAGCAGAAGGGCTTGAAAGGAAACTCTGTTACTTACACGGTGTCCATTAATGCGTTTTGCAAAGTCGACGATATCGATAAGGCGATGAAATTTTTGGATGAAATGTCCAAAGCTGGACGTTATCCTGATGCCATTGTCTATTATACTTTGATATGTGGCTTAGCCCGAGCTGGAAGGTTGGATGATGCAAGCTTTATTATATCGAAGTTGAAAGAGGTTTTCTCCGTTTTTCGGACCTATGCTCTAGAAGCTATTATGCCTCGGGTTGAACCAAAAGAATAA Protein sequence MMRAHELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLARAGRLDDASFIISKLKEVFSVFRTYALEAIMPRVEPKE
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
|---|
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002885 | Pentatricopeptide_repeat |
| IPR011990 | TPR-like_helical_dom_sf |
GO Assignments
This mRNA is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008150 |
biological_process |
| cellular_component |
GO:0005575 |
cellular_component |
| molecular_function |
GO:0005515 |
protein binding |
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| Carg25535 | Carg25535 | gene |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg25535-RA.exon.1 | Carg25535-RA.exon.1 | exon |
| Carg25535-RA.exon.2 | Carg25535-RA.exon.2 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg25535-RA.CDS.1 | Carg25535-RA.CDS.1 | CDS |
| Carg25535-RA.CDS.2 | Carg25535-RA.CDS.2 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg25535-RA | Carg25535-RA-protein | polypeptide |
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | G3DSA:1.25.40.10 | | coord: 2..140
e-value: 1.1E-34
score: 122.4 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13041 | PPR_2 | coord: 22..71
e-value: 4.2E-17
score: 62.0 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF12854 | PPR_1 | coord: 91..113
e-value: 6.9E-6
score: 25.6 |
| IPR002885 | Pentatricopeptide repeat | TIGRFAM | TIGR00756 | TIGR00756 | coord: 25..58
e-value: 5.0E-9
score: 33.8
coord: 60..94
e-value: 7.4E-8
score: 30.1
coord: 95..114
e-value: 0.0015
score: 16.6 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 93..123
score: 7.98 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 58..92
score: 11.674 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 23..57
score: 11.926 |
| None | No IPR available | PANTHER | PTHR24015 | FAMILY NOT NAMED | coord: 10..123 |
| None | No IPR available | PANTHER | PTHR24015:SF771 | F21B23.6 PROTEIN | coord: 10..123 |
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