Carg25389-RA (mRNA) Silver-seed gourd

NameCarg25389-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_283 : 163571 .. 165786 (+)
Sequence length387
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGGAAGTTGTAAAGCAAGCGGGTTGAAGACTGGAGATTATCGAGAATCAACAGCAGATCTTCTAACCAGGCTGAAGGGTCTCAACTGCTCTGAAAAGGAGAAGTGTTAAGAGAGGAGTTAGATCCTCTTTTAGGACAATCCAATTAAGCCCGAGAGAAATAATTCGAGGAGGAGTGAGACAACGTTGGATGACTCTGCTGTGTATTCGGTTACAATTCAAATGAGGAGTCATCTATGTCGGTGATGTAATTTACTTTTTGTGTAGGTAATAGGGAATTCAACACATTGAAGGTTCTTGCACCTTTTCACGTAATATTTGTACATAACATTTTCAGGTCTTCTGTGAATAAGTAGAGATTTCAAATGTTTCTTGTGCTTGTTAGCCATGTTTGTGAATGAAAGCTTTCAAACAAACACTCTTTAAATTCTTGAATCTTGAAGCTGTTCCTCACTGAGAAACTTTTGAGCCCCGAGTGAGGATGATGATATTATATTACAGGGTCAACATAATTTCCCCGAGTGCCTTTTCTTCCTCTCATGAAGGTTATCTGTAAGCTTGTATCCATAAGAAAAATGAGTGCCATACAATATAAGTTTCAATGTTGTTCGGTTTTATTTTTAGTTCTTGAATACATAATTTAATTCTCGTCATTAATCTTTATGTACTTGATTTAGTAAGGTTTTACATTACCCCTTCTCAAATTTGGCAATAGACAAGAAGCGGAGATTCACCATCAGCCTAAAATGATGAGCATAAAAGTGAGGTGATTTCTACTTATATCTCAAATCTTTATCAAACAAGTAGAATCGTGTAAATACTGCTGACTTCTTTGATAATCAATTTACAGATGAGAAACTGGGAACAAAAAAGTATCAGCATTTGGCAAATCTCCCTGTGGGTGAAGAAGCACAAAGTATTATTATTCTGAGAAAAAGCAAAGCTGATAGTTTTCCTAAATACAGTAACTGCTTTCTATGGTGGCAAGAAATACCATATATTTGCCTCAAGGACCTAAAAAATTATGGTCATGAGATGGCCAATAAATCCTCTCTCTTTGGCATGGCAGAGGAGCTGGTTGCGCAATGAAGGTGGGGATGTCCTGCCCTGGCATCAACACTGAGAAATCAGACGCATATGATGTTGGCACCTGCCATAGAAAAACCACAAGCTCAACAAACAAAACCATATCATTTCCAATGTTCAGTGCAATGACTTGACTTGACTTGACCTTAAAAGAAAAGCATGTATTCTGTAATGATGGGTACTGGTTTGTGTCGATGTTCTGTGTCTTGTCACTGTTATGATAAAAGATGATGTTCTTGAAGAAGACAAAGAGAACAGTTATTTTTTAGATTTGGTAGTAACAAAACTAGTTAGGAAATAACAGTTGTTTTCTGTGTAGGTTTTGTCAAGAGATGAAGCTTATGAAGCTGCTGGTGAAACGAGTCTGGTACGATTCTATGTCGTGTGATCGATCAAGATGCATACAAATCAACTTCAATACCGGTTTGTACTGGAGAAAAAGATATCTACTTTCAAGTCTCGAGGTATCATTTTCTACCACTGAGTTTTGGCACTAAGAAGAAAGTATGAAGGGTGAAAAAAATGTATGACTGTTATAGATATCTCCGCATATTCTAGAAAGTACCGAGATATGAAAGATAAACGTATTTATAATTATTCTAGACTCGAAACACTTGATTTCCTAAAGAATGTTAGCTTCTATGGTCCTGTTTGATGAAGTAAAAGAGTGGTTCAGACAAGCATACTTGTAGTTATTCTAGATGAGAAGAGTTGGCTTTAAGTTGTCTTAAACTGATCTTCTAAGCAAATCTGTTCAGGGGGAAGAAGGCTTATTCTATAATGATATGAAGTAGTTTAAAGTCTCAGCAACTGAAACACTTATTTCAAGTGAAGGGGAAAGCACTGAAGAGTTACAAGAATCTAAATCCCACAAGCCAAGAAACTTAAAACATAAAGATAAACAACCCAGGTCGAGACGTACCGTATTAGGACTTATGAATTTCTCGGCAGGACCTGATTCTGCGGAGTTGTTGGTCACTTCAGATGAGGAGAAAGGAGATGTTGGTCTAAACAGATGCTCAAAGATTGCCATGATAAGGAACATTGATATCAAGATTGCAGTGGCAACAAAGCCAAAGGAAATGGCATTCATGGAGGATCCAAAGCTCTTCCATGGAGCTTCTTGA

mRNA sequence

ATGAATGGAAGTTGTAAAGCAAGCGGGTTGAAGACTGGAGATTATCGAGAATCAACAGCAGATCTTCTAACCAGGCTGAAGGGTCTCAACTGCTCTGAAAAGGAGAAGTTTTGTCAAGAGATGAAGCTTATGAAGCTGCTGGTGAAACGAGTCTGGTACGATTCTATGTCGTGTGATCGATCAAGATGCATACAAATCAACTTCAATACCGGACCTGATTCTGCGGAGTTGTTGGTCACTTCAGATGAGGAGAAAGGAGATGTTGGTCTAAACAGATGCTCAAAGATTGCCATGATAAGGAACATTGATATCAAGATTGCAGTGGCAACAAAGCCAAAGGAAATGGCATTCATGGAGGATCCAAAGCTCTTCCATGGAGCTTCTTGA

Coding sequence (CDS)

ATGAATGGAAGTTGTAAAGCAAGCGGGTTGAAGACTGGAGATTATCGAGAATCAACAGCAGATCTTCTAACCAGGCTGAAGGGTCTCAACTGCTCTGAAAAGGAGAAGTTTTGTCAAGAGATGAAGCTTATGAAGCTGCTGGTGAAACGAGTCTGGTACGATTCTATGTCGTGTGATCGATCAAGATGCATACAAATCAACTTCAATACCGGACCTGATTCTGCGGAGTTGTTGGTCACTTCAGATGAGGAGAAAGGAGATGTTGGTCTAAACAGATGCTCAAAGATTGCCATGATAAGGAACATTGATATCAAGATTGCAGTGGCAACAAAGCCAAAGGAAATGGCATTCATGGAGGATCCAAAGCTCTTCCATGGAGCTTCTTGA

Protein sequence

MNGSCKASGLKTGDYRESTADLLTRLKGLNCSEKEKFCQEMKLMKLLVKRVWYDSMSCDRSRCIQINFNTGPDSAELLVTSDEEKGDVGLNRCSKIAMIRNIDIKIAVATKPKEMAFMEDPKLFHGAS
BLAST of Carg25389-RA vs. TrEMBL
Match: tr|A0A0S3S1P0|A0A0S3S1P0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G002800 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.8e-04
Identity = 24/33 (72.73%), Postives = 31/33 (93.94%), Query Frame = 0

Query: 96  IAMIRNIDIKIAVATKPKEMAFMEDPKLFHGAS 129
           +A+IRNI+IK+AVATKPKE+A ++ PKLFHGAS
Sbjct: 1   MAIIRNIEIKMAVATKPKEIALIDVPKLFHGAS 33

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0S3S1P0|A0A0S3S1P0_PHAAN6.8e-0472.73Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G... [more]
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg25389Carg25389gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg25389-RACarg25389-RA-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg25389-RA.exon.1Carg25389-RA.exon.1exon
Carg25389-RA.exon.2Carg25389-RA.exon.2exon
Carg25389-RA.exon.3Carg25389-RA.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg25389-RA.CDS.1Carg25389-RA.CDS.1CDS
Carg25389-RA.CDS.2Carg25389-RA.CDS.2CDS
Carg25389-RA.CDS.3Carg25389-RA.CDS.3CDS