Carg25003-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AGCCCAAAAAATTGACTGAAAACGGAGATTTGGAGGTTGTTTCCTTGGAAAATCTGTAAATGAACGATTACGGAATCGATTCGAAGCAAGAAATTCATCAAAATCATGGAGTGATTGTTGATTGTTACTCTCAGAATACTAGGGCACAGCAGCCCTGGAGGATGGGAGCTTGTGTTCATCTATCCGCCATGGATGAGGTTGAGTCGTTGGAACAGCAAAATCTAGGTTTGTCTAATTCGAGCTCCACCATCATCAACCTGTTCGAATCTCCTGCTTCGGCTTTCTTCGCGACGGAGCAGTGTATGGGGATTCCTCCTATTGAGTTTCGTACTGGTTCTTCGTCTTTCGATAGGGCTTCCGATTCGGCGGAGCACAGCGGCGCAGATTCTGAATTTAGTAACACCTTGCAATCGGTTGTGAGATCTCAACTCTGTAAGAGAAGCTTCAATGGCTTACCGAAGACTATTTTCACTGACTACAAGGTGTTTGATGCTCGTCCGCCTTCAATCGGAAAGCATTTTTCCGTTCCTTTCAAAGATCAAGGAGTACGTAATTTCCACTCTCCATCTGATTAATCTATTTTCCTTCTCTTTTCCAACTTTTATGGATGTTTTTGCGGTGTTGATTCTGATTCAGGGGTGCTATGATTCAACCAGTTATTCAATTGCACAGCCAAGCTTTTGCTCTTCACAAGAGAAGAACTCTCCTAGATTCTCTTGTTTGAGTTCTTCATTTGGCTCTGGAAGCTCTTCTTCTTCCTTCAATGGCAATGGATTCCCTACCAAAACGAGAATCCGATGGACGCAAGATCTCCATGAGAAGTTTGTTGACTGCGTTAATCGTCTTGGTGGTGCTGAGAGTAAGAACATTAAAGCCGATTTGTGGAGTTTTCTTGAATTTTTCAAGGCTCATTGTTGTTTGTGTTACAGAGGCGACGCCTAAAGCAATTTTGAAGCTGATGGATTCAGAGGGATTGACCATATTCCATGTGAAGAGCCATTTGCAGGTTCATCAAAAGAAGAAAGAAATCCATAACATAATTCAATTTTGTATGATTTGAATTTCCTTTCTGACCCATAACTACTGATTTTTGTGTTCTTCCTCCTTTGTAGAAATATCGGATAGCAAAATACATGCCAGAATCTGCAGATAGTAAGAGATTTCCATACTGAAAAACCATTTATTTCAATTCAATCCTCTGTTCTGTTTGCTTGAAAGCTTTGAATCTGGACTAATCAACAATGGATTCTTTCCTGCAACCTCCAATTTTGTATTGTTATTTTGGAATGCAGGGAAATCTGATAGAAGGAACGACATGAATGAAGTTGCTGAACTGGATGTCAAAACGTGAGCTTCTAGTCACTTTTTCTACCTATATTCAAGAATATGAATGATTCAACTCTGTGTTGATAACCATTAAAGTGTTTGATTAAGAAAGATGATAACCAATAGTTATCTAAGATTTTGAAAAGTTATTTCTAACTCATTTGTGTTAATACAATTGAATGATGATGTAAAACAGTGCCATGCAAATTAAAGACGCTTTACAACTGCAGCTCGATGTTCAGAGACGTCTTCATGATCAACTAGAGGTAATATACTCGTGTTCTATCGAGTTTGTGTCGAATAAAGTATAGAATGATGAAATTTTAATTGGTATCTAAACTTTAATAGTGCATAATAGTTCATGAACTCGCGTCTTCATGATCAGCTAGATGTAGTATACTCGTGTTCTATCGAGTTTGTGTCAAATCAACTTTTGAATAATAAAGTGTTTAGTCGGTATCTAAACTCTTTTAGTGTGTAATAGTTCTTGAACTTGCACATTCGTGATCAACTAGAGGTAGTATGCTCGTGTTCTATCGAGTTTATGTCAAATAAACTATTGAATATCAAAATGTTTAATCGGTATCTAAACTTTAATATTGTAATAGTTCTTAAATTTTTATATCTAATAGAAGTCTAAATTTTTAATATTGTCGTTGTAGATACAGAGGAAGCTACAGTTACAAATTGAAGAACAAGGGAAACGACTAAAGATCATGTTTGACCAACAACAAGAAACTAACAAATGCTTCTTCACAGCCAATGGCTTCAACAAACCGTTCCCTAACGACCCGTCGGGTTATCTCGACGATCCTCGACAGCCGAAAACATCTGAAATGCCCAATTCCCAACCGACATAA AGCCCAAAAAATTGACTGAAAACGGAGATTTGGAGGTTGTTTCCTTGGAAAATCTGTAAATGAACGATTACGGAATCGATTCGAAGCAAGAAATTCATCAAAATCATGGAGTGATTGTTGATTGTTACTCTCAGAATACTAGGGCACAGCAGCCCTGGAGGATGGGAGCTTGTGTTCATCTATCCGCCATGGATGAGGTTGAGTCGTTGGAACAGCAAAATCTAGGTTTGTCTAATTCGAGCTCCACCATCATCAACCTGTTCGAATCTCCTGCTTCGGCTTTCTTCGCGACGGAGCAGTGTATGGGGATTCCTCCTATTGAGTTTCGTACTGGTTCTTCGTCTTTCGATAGGGCTTCCGATTCGGCGGAGCACAGCGGCGCAGATTCTGAATTTAGTAACACCTTGCAATCGGTTGTGAGATCTCAACTCTGTAAGAGAAGCTTCAATGGCTTACCGAAGACTATTTTCACTGACTACAAGGTGTTTGATGCTCGTCCGCCTTCAATCGGAAAGCATTTTTCCGTTCCTTTCAAAGATCAAGGAGGGTGCTATGATTCAACCAGTTATTCAATTGCACAGCCAAGCTTTTGCTCTTCACAAGAGAAGAACTCTCCTAGATTCTCTTGTTTGAGTTCTTCATTTGGCTCTGGAAGCTCTTCTTCTTCCTTCAATGGCAATGGATTCCCTACCAAAACGAGAATCCGATGGACGCAAGATCTCCATGAGAAGTTTGTTGACTGCGTTAATCGTCTTGGTGGTGCTGAGAAGGCGACGCCTAAAGCAATTTTGAAGCTGATGGATTCAGAGGGATTGACCATATTCCATGTGAAGAGCCATTTGCAGAAATATCGGATAGCAAAATACATGCCAGAATCTGCAGATAGGAAATCTGATAGAAGGAACGACATGAATGAAGTTGCTGAACTGGATGTCAAAACTGCCATGCAAATTAAAGACGCTTTACAACTGCAGCTCGATGTTCAGAGACGTCTTCATGATCAACTAGAGATACAGAGGAAGCTACAGTTACAAATTGAAGAACAAGGGAAACGACTAAAGATCATGTTTGACCAACAACAAGAAACTAACAAATGCTTCTTCACAGCCAATGGCTTCAACAAACCGTTCCCTAACGACCCGTCGGGTTATCTCGACGATCCTCGACAGCCGAAAACATCTGAAATGCCCAATTCCCAACCGACATAA ATGAACGATTACGGAATCGATTCGAAGCAAGAAATTCATCAAAATCATGGAGTGATTGTTGATTGTTACTCTCAGAATACTAGGGCACAGCAGCCCTGGAGGATGGGAGCTTGTGTTCATCTATCCGCCATGGATGAGGTTGAGTCGTTGGAACAGCAAAATCTAGGTTTGTCTAATTCGAGCTCCACCATCATCAACCTGTTCGAATCTCCTGCTTCGGCTTTCTTCGCGACGGAGCAGTGTATGGGGATTCCTCCTATTGAGTTTCGTACTGGTTCTTCGTCTTTCGATAGGGCTTCCGATTCGGCGGAGCACAGCGGCGCAGATTCTGAATTTAGTAACACCTTGCAATCGGTTGTGAGATCTCAACTCTGTAAGAGAAGCTTCAATGGCTTACCGAAGACTATTTTCACTGACTACAAGGTGTTTGATGCTCGTCCGCCTTCAATCGGAAAGCATTTTTCCGTTCCTTTCAAAGATCAAGGAGGGTGCTATGATTCAACCAGTTATTCAATTGCACAGCCAAGCTTTTGCTCTTCACAAGAGAAGAACTCTCCTAGATTCTCTTGTTTGAGTTCTTCATTTGGCTCTGGAAGCTCTTCTTCTTCCTTCAATGGCAATGGATTCCCTACCAAAACGAGAATCCGATGGACGCAAGATCTCCATGAGAAGTTTGTTGACTGCGTTAATCGTCTTGGTGGTGCTGAGAAGGCGACGCCTAAAGCAATTTTGAAGCTGATGGATTCAGAGGGATTGACCATATTCCATGTGAAGAGCCATTTGCAGAAATATCGGATAGCAAAATACATGCCAGAATCTGCAGATAGGAAATCTGATAGAAGGAACGACATGAATGAAGTTGCTGAACTGGATGTCAAAACTGCCATGCAAATTAAAGACGCTTTACAACTGCAGCTCGATGTTCAGAGACGTCTTCATGATCAACTAGAGATACAGAGGAAGCTACAGTTACAAATTGAAGAACAAGGGAAACGACTAAAGATCATGTTTGACCAACAACAAGAAACTAACAAATGCTTCTTCACAGCCAATGGCTTCAACAAACCGTTCCCTAACGACCCGTCGGGTTATCTCGACGATCCTCGACAGCCGAAAACATCTGAAATGCCCAATTCCCAACCGACATAA MNDYGIDSKQEIHQNHGVIVDCYSQNTRAQQPWRMGACVHLSAMDEVESLEQQNLGLSNSSSTIINLFESPASAFFATEQCMGIPPIEFRTGSSSFDRASDSAEHSGADSEFSNTLQSVVRSQLCKRSFNGLPKTIFTDYKVFDARPPSIGKHFSVPFKDQGGCYDSTSYSIAQPSFCSSQEKNSPRFSCLSSSFGSGSSSSSFNGNGFPTKTRIRWTQDLHEKFVDCVNRLGGAEKATPKAILKLMDSEGLTIFHVKSHLQKYRIAKYMPESADRKSDRRNDMNEVAELDVKTAMQIKDALQLQLDVQRRLHDQLEIQRKLQLQIEEQGKRLKIMFDQQQETNKCFFTANGFNKPFPNDPSGYLDDPRQPKTSEMPNSQPT
BLAST of Carg25003-RA vs. NCBI nr
Match: XP_023544661.1 (myb family transcription factor PHL5 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 645.2 bits (1663), Expect = 1.4e-181 Identity = 365/380 (96.05%), Postives = 369/380 (97.11%), Query Frame = 0
BLAST of Carg25003-RA vs. NCBI nr
Match: XP_022928710.1 (myb family transcription factor PHL5 [Cucurbita moschata]) HSP 1 Score: 644.8 bits (1662), Expect = 1.8e-181 Identity = 365/371 (98.38%), Postives = 367/371 (98.92%), Query Frame = 0
BLAST of Carg25003-RA vs. NCBI nr
Match: XP_022967813.1 (myb family transcription factor PHL5 [Cucurbita maxima]) HSP 1 Score: 636.7 bits (1641), Expect = 5.0e-179 Identity = 362/380 (95.26%), Postives = 366/380 (96.32%), Query Frame = 0
BLAST of Carg25003-RA vs. NCBI nr
Match: XP_022966364.1 (myb family transcription factor PHL5-like [Cucurbita maxima]) HSP 1 Score: 460.3 bits (1183), Expect = 6.4e-126 Identity = 291/396 (73.48%), Postives = 313/396 (79.04%), Query Frame = 0
BLAST of Carg25003-RA vs. NCBI nr
Match: XP_023517343.1 (myb family transcription factor PHL4-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 451.1 bits (1159), Expect = 3.9e-123 Identity = 278/396 (70.20%), Postives = 298/396 (75.25%), Query Frame = 0
BLAST of Carg25003-RA vs. TAIR10
Match: AT5G06800.1 (myb-like HTH transcriptional regulator family protein) HSP 1 Score: 149.8 bits (377), Expect = 3.3e-36 Identity = 104/253 (41.11%), Postives = 139/253 (54.94%), Query Frame = 0
BLAST of Carg25003-RA vs. TAIR10
Match: AT2G01060.1 (myb-like HTH transcriptional regulator family protein) HSP 1 Score: 110.9 bits (276), Expect = 1.7e-24 Identity = 50/96 (52.08%), Postives = 76/96 (79.17%), Query Frame = 0
BLAST of Carg25003-RA vs. TAIR10
Match: AT5G29000.2 (Homeodomain-like superfamily protein) HSP 1 Score: 109.4 bits (272), Expect = 5.0e-24 Identity = 79/136 (58.09%), Postives = 109/136 (80.15%), Query Frame = 0
BLAST of Carg25003-RA vs. TAIR10
Match: AT3G04450.1 (Homeodomain-like superfamily protein) HSP 1 Score: 104.0 bits (258), Expect = 2.1e-22 Identity = 88/179 (49.16%), Postives = 123/179 (68.72%), Query Frame = 0
BLAST of Carg25003-RA vs. TAIR10
Match: AT3G13040.1 (myb-like HTH transcriptional regulator family protein) HSP 1 Score: 103.6 bits (257), Expect = 2.8e-22 Identity = 54/102 (52.94%), Postives = 73/102 (71.57%), Query Frame = 0
BLAST of Carg25003-RA vs. Swiss-Prot
Match: sp|Q0WVU3|PHL5_ARATH (Myb family transcription factor PHL5 OS=Arabidopsis thaliana OX=3702 GN=PHL5 PE=2 SV=1) HSP 1 Score: 149.8 bits (377), Expect = 6.0e-35 Identity = 104/253 (41.11%), Postives = 139/253 (54.94%), Query Frame = 0
BLAST of Carg25003-RA vs. Swiss-Prot
Match: sp|Q9SJW0|PHL7_ARATH (Myb family transcription factor PHL7 OS=Arabidopsis thaliana OX=3702 GN=PHL7 PE=2 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 3.1e-23 Identity = 50/96 (52.08%), Postives = 76/96 (79.17%), Query Frame = 0
BLAST of Carg25003-RA vs. Swiss-Prot
Match: sp|Q8GUN5|PHL1_ARATH (Protein PHR1-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=PHL1 PE=1 SV=1) HSP 1 Score: 109.4 bits (272), Expect = 9.0e-23 Identity = 79/136 (58.09%), Postives = 109/136 (80.15%), Query Frame = 0
BLAST of Carg25003-RA vs. Swiss-Prot
Match: sp|B8B5N8|PHR2_ORYSI (Protein PHOSPHATE STARVATION RESPONSE 2 OS=Oryza sativa subsp. indica OX=39946 GN=PHR2 PE=3 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 1.0e-21 Identity = 51/96 (53.12%), Postives = 72/96 (75.00%), Query Frame = 0
BLAST of Carg25003-RA vs. Swiss-Prot
Match: sp|Q6Z156|PHR2_ORYSJ (Protein PHOSPHATE STARVATION RESPONSE 2 OS=Oryza sativa subsp. japonica OX=39947 GN=PHR2 PE=1 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 1.0e-21 Identity = 51/96 (53.12%), Postives = 72/96 (75.00%), Query Frame = 0
BLAST of Carg25003-RA vs. TrEMBL
Match: tr|A0A1S3B500|A0A1S3B500_CUCME (uncharacterized protein LOC103486080 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486080 PE=4 SV=1) HSP 1 Score: 439.9 bits (1130), Expect = 5.9e-120 Identity = 235/316 (74.37%), Postives = 250/316 (79.11%), Query Frame = 0
BLAST of Carg25003-RA vs. TrEMBL
Match: tr|A0A0A0L162|A0A0A0L162_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499310 PE=4 SV=1) HSP 1 Score: 434.9 bits (1117), Expect = 1.9e-118 Identity = 232/316 (73.42%), Postives = 248/316 (78.48%), Query Frame = 0
BLAST of Carg25003-RA vs. TrEMBL
Match: tr|A0A1S3B5M5|A0A1S3B5M5_CUCME (protein PHR1-LIKE 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486080 PE=4 SV=1) HSP 1 Score: 387.5 bits (994), Expect = 3.5e-104 Identity = 208/282 (73.76%), Postives = 222/282 (78.72%), Query Frame = 0
BLAST of Carg25003-RA vs. TrEMBL
Match: tr|A0A2P4ML39|A0A2P4ML39_QUESU (Myb family transcription factor phl5 OS=Quercus suber OX=58331 GN=CFP56_12482 PE=4 SV=1) HSP 1 Score: 238.0 bits (606), Expect = 3.4e-59 Identity = 185/418 (44.26%), Postives = 245/418 (58.61%), Query Frame = 0
BLAST of Carg25003-RA vs. TrEMBL
Match: tr|A0A2C9VDJ5|A0A2C9VDJ5_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G045400 PE=4 SV=1) HSP 1 Score: 231.9 bits (590), Expect = 2.4e-57 Identity = 189/416 (45.43%), Postives = 235/416 (56.49%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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