Carg24998-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24998-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Cytokinin dehydrogenase
Location	Cucurbita_argyrosperma_scaffold_187 : 230395 .. 232266 (-)
Sequence length	792

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGTACCAACATCTGGCTTCATCAAAAAAAGCATTATTGTTCTCAAGTTATACATAATTCTATATATCAGTTGCATACCTGACAGCAGGAACCACCTATATGCAGCCTCAATAATTCCACCTTATTTTGGTTCCTCTGATATATCAACGTATGCCCTGCAAACACTGGAATTGGATGGATACCTCAGCTTTGAAAATAATCATCAAGCAGCAACAGATTTTGGAAAAAGATACCATTTACTACCGTTAGCTGTGTTACATCCAAGCTCTGTCTCCGATATATCGCGCACAATAAACCATATCTTCAGAATGGGATATGTGTCGGAGTTGACCGTTGCAGCTAGAGGCCATGGACATTCCATCCAAGGTCAAGCTCAAGCCTATAATGGTGTAGTTATCAGTATGGAATCATTTCAAGGGCCAGAAATGAAAATAAATGCAGGGGATTTACCTTATGTGGATGTTTCAGCTGGAGAGCTGTGGATAAATATCCTGCATGAAACTCTTAAACTGGGGCTGGCACCAAAATCTTGGACTGATTACCTGCATCTTACTGTTGGAGGCACCTTGTCAAATGCTGGCATTAGTGGGCAGGCTTTCAGGCATGGACCCCAGATCAGCAACGTTTATCAGCTGGAAGTTGTAACAGGTACCTCCATACTGTTCATCAGAACAGTGTCACTTGATATTACAACATATCATGTAATATCACTTGTCATTCCACAAAGAAGCAACTTTTTTTTCCTGGCATGATGTGTTGATCATGGGTTTATAAGTGAGAATATTGATCGTCCGATTGGATATGAGGACTTTTTGGGGAAGCCAAGACAAAGCCATGAGGTTTATGCATCAAAGGTGGAACAATATCATACATCTGTAAAGCGAGTACGTGATTACGTAACCATTGGTATCAGAGTCGGCCTAACTTAAACCATGTCAATAGAATCCTCAAGATATCGAACAAAGATGTGAGCCTAGAAGGTGTAGTTAAAGTGACTAAAGTGTCGAACAAGGTGTTACTTGTTTCGAGGGCGTCCAGAGAAAGGAGTCGAGTCTCGATTAAGGGGAGCACTGAGGCTTTATAGTGTACTTGTTCGAAGGGGAATCAGATTGTTGAGGATTATCGGGGACTGATCCCAACATTGGATTAATTTTAAGGTGGAAGATCATGGGTTTATAAGTGAGGAATAGCTATCTTCATTGGTATTGTAGCAATCTCTTTTGGGGAAAGCCCAATTATGCAAAAAGCCATCGCACAGCCTTATGTCTCAGTGGGACCTATATTATCTTTCTACACGATGTTGAATAGAGATCAATATAGATTCTAACAGTCTCCTTCCAAAATCAAATACGTTTAAGAGTATTGTTCTGACGGAGGAGTTAAAATTGCCTATTTCTAGGCACTTTTTGACAATAAAATTCTGTTCACCAAATGATTATCTAGAAAACTTGAGCAGAGGAACAGGTGGTGCCTGATAACATCAGATCTTGCAGAACCCAAATAAAGAAGCTTTTTATCCACTGATGCGGAGTTCTCCTCGTGCGTGACATGGACGAGTTTGGCATCAATAACAATGGAGGAGAGCAAGATAACTTTGAAAAGGCAACCAAAAAATGGAAAAAGAATAGCATAGTTACCTAACTTTATTTTTGTAATTATTACAGCCGCAAAGTTACAACGTGAAATCATTATCGAAGTAAGAATGATGATCGTAAAATTAATATGATAAACACAAAACTCATCAAAATTTTTTTTTTCAGTTAAATGTGAATATAGAATGTTTGTATCTCTATGAAACTTCAAATCCGCAAAAATTATACAAGAGACCAAAGAAAGTATCTGATAAATCTCCATGGAATCAATTATGA

mRNA sequence

ATGAGGGTACCAACATCTGGCTTCATCAAAAAAAGCATTATTGTTCTCAAGTTATACATAATTCTATATATCAGTTGCATACCTGACAGCAGGAACCACCTATATGCAGCCTCAATAATTCCACCTTATTTTGGTTCCTCTGATATATCAACGTATGCCCTGCAAACACTGGAATTGGATGGATACCTCAGCTTTGAAAATAATCATCAAGCAGCAACAGATTTTGGAAAAAGATACCATTTACTACCGTTAGCTGTGTTACATCCAAGCTCTGTCTCCGATATATCGCGCACAATAAACCATATCTTCAGAATGGGATATGTGTCGGAGTTGACCGTTGCAGCTAGAGGCCATGGACATTCCATCCAAGGTCAAGCTCAAGCCTATAATGGTGTAGTTATCAGTATGGAATCATTTCAAGGGCCAGAAATGAAAATAAATGCAGGGGATTTACCTTATGTGGATGTTTCAGCTGGAGAGCTGTGGATAAATATCCTGCATGAAACTCTTAAACTGGGGCTGGCACCAAAATCTTGGACTGATTACCTGCATCTTACTGTTGGAGGCACCTTGTCAAATGCTGGCATTAGTGGGCAGGCTTTCAGGCATGGACCCCAGATCAGCAACGTTTATCAGCTGGAAGTTGTAACAGCCGCAAAGTTACAACGTGAAATCATTATCGAATTAAATGTGAATATAGAATGTTTGTATCTCTATGAAACTTCAAATCCGCAAAAATTATACAAGAGACCAAAGAAAGTATCTGATAAATCTCCATGGAATCAATTATGA

Coding sequence (CDS)

ATGAGGGTACCAACATCTGGCTTCATCAAAAAAAGCATTATTGTTCTCAAGTTATACATAATTCTATATATCAGTTGCATACCTGACAGCAGGAACCACCTATATGCAGCCTCAATAATTCCACCTTATTTTGGTTCCTCTGATATATCAACGTATGCCCTGCAAACACTGGAATTGGATGGATACCTCAGCTTTGAAAATAATCATCAAGCAGCAACAGATTTTGGAAAAAGATACCATTTACTACCGTTAGCTGTGTTACATCCAAGCTCTGTCTCCGATATATCGCGCACAATAAACCATATCTTCAGAATGGGATATGTGTCGGAGTTGACCGTTGCAGCTAGAGGCCATGGACATTCCATCCAAGGTCAAGCTCAAGCCTATAATGGTGTAGTTATCAGTATGGAATCATTTCAAGGGCCAGAAATGAAAATAAATGCAGGGGATTTACCTTATGTGGATGTTTCAGCTGGAGAGCTGTGGATAAATATCCTGCATGAAACTCTTAAACTGGGGCTGGCACCAAAATCTTGGACTGATTACCTGCATCTTACTGTTGGAGGCACCTTGTCAAATGCTGGCATTAGTGGGCAGGCTTTCAGGCATGGACCCCAGATCAGCAACGTTTATCAGCTGGAAGTTGTAACAGCCGCAAAGTTACAACGTGAAATCATTATCGAATTAAATGTGAATATAGAATGTTTGTATCTCTATGAAACTTCAAATCCGCAAAAATTATACAAGAGACCAAAGAAAGTATCTGATAAATCTCCATGGAATCAATTATGA

Protein sequence

MRVPTSGFIKKSIIVLKLYIILYISCIPDSRNHLYAASIIPPYFGSSDISTYALQTLELDGYLSFENNHQAATDFGKRYHLLPLAVLHPSSVSDISRTINHIFRMGYVSELTVAARGHGHSIQGQAQAYNGVVISMESFQGPEMKINAGDLPYVDVSAGELWINILHETLKLGLAPKSWTDYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVTAAKLQREIIIELNVNIECLYLYETSNPQKLYKRPKKVSDKSPWNQL

Homology

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BLAST of Carg24998-RA vs. NCBI nr
Match: XP_022928590.1 (cytokinin dehydrogenase 1-like [Cucurbita moschata])

HSP 1 Score: 435.6 bits (1119), Expect = 1.2e-118
Identity = 216/217 (99.54%), Postives = 217/217 (100.00%), Query Frame = 0


Query: 1   MRVPTSGFIKKSIIVLKLYIILYISCIPDSRNHLYAASIIPPYFGSSDISTYALQTLELD 60
           MRVPTSGFIKKSIIVLKLYIILYISCIPDSRNHLYAASIIPP+FGSSDISTYALQTLELD
Sbjct: 1   MRVPTSGFIKKSIIVLKLYIILYISCIPDSRNHLYAASIIPPHFGSSDISTYALQTLELD 60

Query: 61  GYLSFENNHQAATDFGKRYHLLPLAVLHPSSVSDISRTINHIFRMGYVSELTVAARGHGH 120
           GYLSFENNHQAATDFGKRYHLLPLAVLHPSSVSDISRTINHIFRMGYVSELTVAARGHGH
Sbjct: 61  GYLSFENNHQAATDFGKRYHLLPLAVLHPSSVSDISRTINHIFRMGYVSELTVAARGHGH 120

Query: 121 SIQGQAQAYNGVVISMESFQGPEMKINAGDLPYVDVSAGELWINILHETLKLGLAPKSWT 180
           SIQGQAQAYNGVVISMESFQGPEMKINAGDLPYVDVSAGELWINILHETLKLGLAPKSWT
Sbjct: 121 SIQGQAQAYNGVVISMESFQGPEMKINAGDLPYVDVSAGELWINILHETLKLGLAPKSWT 180

Query: 181 DYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVT 218
           DYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVT
Sbjct: 181 DYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVT 217

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BLAST of Carg24998-RA vs. NCBI nr
Match: XP_023543218.1 (cytokinin dehydrogenase 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 432.6 bits (1111), Expect = 9.8e-118
Identity = 215/217 (99.08%), Postives = 216/217 (99.54%), Query Frame = 0


Query: 1   MRVPTSGFIKKSIIVLKLYIILYISCIPDSRNHLYAASIIPPYFGSSDISTYALQTLELD 60
           MRVPTSGFIKKSIIVLKLYIILYISCIPDSRNHLYAASIIPP+FGSSDISTYALQTLELD
Sbjct: 1   MRVPTSGFIKKSIIVLKLYIILYISCIPDSRNHLYAASIIPPHFGSSDISTYALQTLELD 60

Query: 61  GYLSFENNHQAATDFGKRYHLLPLAVLHPSSVSDISRTINHIFRMGYVSELTVAARGHGH 120
           GYLSFENNHQAATDFGKRYHLLPLAVLHPSSVSDISRTINHIFRMGYVSELTVAARGHGH
Sbjct: 61  GYLSFENNHQAATDFGKRYHLLPLAVLHPSSVSDISRTINHIFRMGYVSELTVAARGHGH 120

Query: 121 SIQGQAQAYNGVVISMESFQGPEMKINAGDLPYVDVSAGELWINILHETLKLGLAPKSWT 180
           SIQGQAQAYNGVVISMESFQGPEMKINAG LPYVDVSAGELWINILHETLKLGLAPKSWT
Sbjct: 121 SIQGQAQAYNGVVISMESFQGPEMKINAGALPYVDVSAGELWINILHETLKLGLAPKSWT 180

Query: 181 DYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVT 218
           DYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVT
Sbjct: 181 DYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVT 217

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BLAST of Carg24998-RA vs. NCBI nr
Match: XP_022967768.1 (cytokinin dehydrogenase 1-like [Cucurbita maxima])

HSP 1 Score: 424.1 bits (1089), Expect = 3.5e-115
Identity = 209/217 (96.31%), Postives = 215/217 (99.08%), Query Frame = 0


Query: 1   MRVPTSGFIKKSIIVLKLYIILYISCIPDSRNHLYAASIIPPYFGSSDISTYALQTLELD 60
           MRVPTSGFIKKSIIVLKLYIILYISCIPDSRNHL+AASIIPP+FGSSDISTYALQTL LD
Sbjct: 1   MRVPTSGFIKKSIIVLKLYIILYISCIPDSRNHLFAASIIPPHFGSSDISTYALQTLGLD 60

Query: 61  GYLSFENNHQAATDFGKRYHLLPLAVLHPSSVSDISRTINHIFRMGYVSELTVAARGHGH 120
           GYLSFENNHQAATDFGKRYHLLPLAVLHP+SVSDISRTINHIFRMGYVS+LTVAARGHGH
Sbjct: 61  GYLSFENNHQAATDFGKRYHLLPLAVLHPNSVSDISRTINHIFRMGYVSDLTVAARGHGH 120

Query: 121 SIQGQAQAYNGVVISMESFQGPEMKINAGDLPYVDVSAGELWINILHETLKLGLAPKSWT 180
           SIQGQAQAYNGVVISMESFQGPEMKINAG+LPYVDVSAGELWINILHETLK G+APKSWT
Sbjct: 121 SIQGQAQAYNGVVISMESFQGPEMKINAGNLPYVDVSAGELWINILHETLKQGMAPKSWT 180

Query: 181 DYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVT 218
           DYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVT
Sbjct: 181 DYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVT 217

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BLAST of Carg24998-RA vs. NCBI nr
Match: XP_022966269.1 (cytokinin dehydrogenase 1-like [Cucurbita maxima])

HSP 1 Score: 388.3 bits (996), Expect = 2.1e-104
Identity = 191/217 (88.02%), Postives = 202/217 (93.09%), Query Frame = 0


Query: 1   MRVPTSGFIKKSIIVLKLYIILYISCIPDSRNHLYAASIIPPYFGSSDISTYALQTLELD 60
           M +P SGFIK+SII LKLYIILYISCIPDS NHL+AA  IPP+FGSSDIS+Y LQTLELD
Sbjct: 1   MGLPPSGFIKQSIIFLKLYIILYISCIPDSTNHLFAAPTIPPHFGSSDISSYELQTLELD 60

Query: 61  GYLSFENNHQAATDFGKRYHLLPLAVLHPSSVSDISRTINHIFRMGYVSELTVAARGHGH 120
           GYLSF+NNH+AATDFG RY+L PLAVLHP SVSDIS TINHIF MGY S+LTVAARGHGH
Sbjct: 61  GYLSFDNNHKAATDFGNRYNLYPLAVLHPKSVSDISNTINHIFSMGYASDLTVAARGHGH 120

Query: 121 SIQGQAQAYNGVVISMESFQGPEMKINAGDLPYVDVSAGELWINILHETLKLGLAPKSWT 180
           SIQGQAQAYNGVVI+MESFQG EMKINAG+LPYVDVSAGELWINILHETLK GLAPKSWT
Sbjct: 121 SIQGQAQAYNGVVINMESFQGLEMKINAGELPYVDVSAGELWINILHETLKQGLAPKSWT 180

Query: 181 DYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVT 218
           DYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVT
Sbjct: 181 DYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVT 217

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BLAST of Carg24998-RA vs. NCBI nr
Match: XP_022925103.1 (cytokinin dehydrogenase 1-like [Cucurbita moschata])

HSP 1 Score: 387.1 bits (993), Expect = 4.7e-104
Identity = 191/217 (88.02%), Postives = 201/217 (92.63%), Query Frame = 0


Query: 1   MRVPTSGFIKKSIIVLKLYIILYISCIPDSRNHLYAASIIPPYFGSSDISTYALQTLELD 60
           M  P SGFIK+SII LKLYIILYISCIPDS NHL+AA  IPP+FGSSDIS+Y LQTLELD
Sbjct: 1   MGSPPSGFIKQSIIFLKLYIILYISCIPDSTNHLFAAPTIPPHFGSSDISSYELQTLELD 60

Query: 61  GYLSFENNHQAATDFGKRYHLLPLAVLHPSSVSDISRTINHIFRMGYVSELTVAARGHGH 120
           GYLSF+NNH+AATDFG RY+L PLAVLHP SVSDIS TINHIF MGY S+LTVAARGHGH
Sbjct: 61  GYLSFDNNHKAATDFGNRYNLYPLAVLHPKSVSDISNTINHIFSMGYASDLTVAARGHGH 120

Query: 121 SIQGQAQAYNGVVISMESFQGPEMKINAGDLPYVDVSAGELWINILHETLKLGLAPKSWT 180
           SIQGQAQAYNGVVI+MESFQG EMKINAG+LPYVDVSAGELWINILHETLK GLAPKSWT
Sbjct: 121 SIQGQAQAYNGVVINMESFQGLEMKINAGELPYVDVSAGELWINILHETLKQGLAPKSWT 180

Query: 181 DYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVT 218
           DYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVT
Sbjct: 181 DYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVT 217

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BLAST of Carg24998-RA vs. TAIR10
Match: AT2G41510.1 (cytokinin oxidase/dehydrogenase 1)

HSP 1 Score: 251.9 bits (642), Expect = 4.3e-67
Identity = 127/206 (61.65%), Postives = 154/206 (74.76%), Query Frame = 0


Query: 16  LKLYIILYISCIPD----SRNHLYAASIIPPYFGSSDISTYALQTLELDGYLSFENNHQA 75
           L +++IL +SCIP       NH  +     P    SDI + +L +L+L+GY+SF++ H  
Sbjct: 18  LGIFMILVLSCIPGRTNLCSNHSVSTPKELPSSNPSDIRS-SLVSLDLEGYISFDDVHNV 77

Query: 76  ATDFGKRYHLLPLAVLHPSSVSDISRTINHIFRMGYVSELTVAARGHGHSIQGQAQAYNG 135
           A DFG RY L PLA+LHP SV DIS  + HI  +G  S LTVAARGHGHS+QGQA A+ G
Sbjct: 78  AKDFGNRYQLPPLAILHPRSVFDISSMMKHIVHLGSTSNLTVAARGHGHSLQGQALAHQG 137

Query: 136 VVISMESFQGPEMKINAGDLPYVDVSAGELWINILHETLKLGLAPKSWTDYLHLTVGGTL 195
           VVI MES + P+++I  G  PYVDVS GE+WINIL ETLK GL+PKSWTDYLHLTVGGTL
Sbjct: 138 VVIKMESLRSPDIRIYKGKQPYVDVSGGEIWINILRETLKYGLSPKSWTDYLHLTVGGTL 197

Query: 196 SNAGISGQAFRHGPQISNVYQLEVVT 218
           SNAGISGQAF+HGPQI+NVYQLE+VT
Sbjct: 198 SNAGISGQAFKHGPQINNVYQLEIVT 222

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BLAST of Carg24998-RA vs. TAIR10
Match: AT3G63440.1 (cytokinin oxidase/dehydrogenase 6)

HSP 1 Score: 244.6 bits (623), Expect = 6.9e-65
Identity = 126/210 (60.00%), Postives = 157/210 (74.76%), Query Frame = 0


Query: 10  KKSIIVLKLYIILYISCIPDSRNHLYAASIIPPYFGSSDISTYALQTLELDGYLSFENNH 69
           K+++++++ + IL +SCI       +++SI             +L+ L L G+L FE+ H
Sbjct: 11  KRTMLIVRSFTILLLSCIAFKLACCFSSSI------------SSLKALPLVGHLEFEHVH 70

Query: 70  QAATDFGKRYHLLPLAVLHPSSVSDISRTINHIFRMGYVSELTVAARGHGHSIQGQAQAY 129
            A+ DFG RY L+PLAVLHP SVSDI+ TI HI+ MG  S+LTVAARG GHS+QGQAQ  
Sbjct: 71  HASKDFGNRYQLIPLAVLHPKSVSDIASTIRHIWMMGTHSQLTVAARGRGHSLQGQAQTR 130

Query: 130 NGVVISMESFQGPEMKINAGD--LPYVDVSAGELWINILHETLKLGLAPKSWTDYLHLTV 189
           +G+VI MES    ++++ + D   PYVDVS GELWINILHETLK GLAPKSWTDYLHLTV
Sbjct: 131 HGIVIHMESLHPQKLQVYSVDSPAPYVDVSGGELWINILHETLKYGLAPKSWTDYLHLTV 190

Query: 190 GGTLSNAGISGQAFRHGPQISNVYQLEVVT 218
           GGTLSNAGISGQAFRHGPQISNV+QLE+VT
Sbjct: 191 GGTLSNAGISGQAFRHGPQISNVHQLEIVT 208

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BLAST of Carg24998-RA vs. TAIR10
Match: AT1G75450.1 (cytokinin oxidase 5)

HSP 1 Score: 160.6 bits (405), Expect = 1.3e-39
Identity = 89/166 (53.61%), Postives = 114/166 (68.67%), Query Frame = 0


Query: 57  LELDGYLSFENNHQA--ATDFGK-RYHLLPLAVLHPSSVSDISRTINHIFRMGYVSELTV 116
           +++DG+ +   +  A  ++DFG  +    PLAVLHPSS  D++R +   +  G  +   V
Sbjct: 38  IDVDGHFTVHPSDLASVSSDFGMLKSPEEPLAVLHPSSAEDVARLVRTAY--GSATAFPV 97

Query: 117 AARGHGHSIQGQAQA-YNGVVISM-ESFQGPEMKINAGDLPYVDVSAGELWINILHETLK 176
           +ARGHGHSI GQA A  NGVV+ M     G    +   D  YVDV  GELW+++L +TL+
Sbjct: 98  SARGHGHSINGQAAAGRNGVVVEMNHGVTGTPKPLVRPDEMYVDVWGGELWVDVLKKTLE 157

Query: 177 LGLAPKSWTDYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVT 218
            GLAPKSWTDYL+LTVGGTLSNAGISGQAF HGPQISNV +L+VVT
Sbjct: 158 HGLAPKSWTDYLYLTVGGTLSNAGISGQAFHHGPQISNVLELDVVT 201

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BLAST of Carg24998-RA vs. TAIR10
Match: AT5G56970.1 (cytokinin oxidase 3)

HSP 1 Score: 152.9 bits (385), Expect = 2.7e-37
Identity = 81/150 (54.00%), Postives = 106/150 (70.67%), Query Frame = 0


Query: 71  AATDFGKRYHLLPLAVLHPSSVSDISRTINHIFRMGYVSELT--VAARGHGHSIQGQAQA 130
           AATDFG    + P AVL PSSV DI+     + ++ + S+L+  +AARGHGHS +GQA A
Sbjct: 58  AATDFGHVTKIFPSAVLIPSSVEDIT----DLIKLSFDSQLSFPLAARGHGHSHRGQASA 117

Query: 131 YNGVVISMESFQGPEMKINAG-DLPYVDVSAGELWINILHETLKLGLAPKSWTDYLHLTV 190
            +GVV++M S    +  I       YVDV A  LWI +L++TL+LGL P SWTDYL+LTV
Sbjct: 118 KDGVVVNMRSMVNRDRGIKVSRTCLYVDVDAAWLWIEVLNKTLELGLTPVSWTDYLYLTV 177

Query: 191 GGTLSNAGISGQAFRHGPQISNVYQLEVVT 218
           GGTLSN GISGQ FR+GPQI+NV +++V+T
Sbjct: 178 GGTLSNGGISGQTFRYGPQITNVLEMDVIT 203

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BLAST of Carg24998-RA vs. TAIR10
Match: AT5G21482.1 (cytokinin oxidase 7)

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-32
Identity = 77/152 (50.66%), Postives = 99/152 (65.13%), Query Frame = 0


Query: 71  AATDFGKRYHLLPLAVLHPSSVSDISRTINHIFRMGYVSELTVAARGHGHSIQGQAQAYN 130
           A  DFG    + PLAV+ P    DI+  +    R     +LTVAARG+GHSI GQA A  
Sbjct: 50  AGRDFGGMNCVKPLAVVRPVGPEDIAGAVKAALRS---DKLTVAARGNGHSINGQAMAEG 109

Query: 131 GVVISMESFQGPEMKI---NAGD-LPYVDVSAGELWINILHETL-KLGLAPKSWTDYLHL 190
           G+V+ M +      ++   + GD   +VDVS G LW ++L   + + GLAP+SWTDYL L
Sbjct: 110 GLVVDMSTTAENHFEVGYLSGGDATAFVDVSGGALWEDVLKRCVSEYGLAPRSWTDYLGL 169

Query: 191 TVGGTLSNAGISGQAFRHGPQISNVYQLEVVT 218
           TVGGTLSNAG+SGQAFR+GPQ SNV +L+VVT
Sbjct: 170 TVGGTLSNAGVSGQAFRYGPQTSNVTELDVVT 198

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BLAST of Carg24998-RA vs. Swiss-Prot
Match: sp|O22213|CKX1_ARATH (Cytokinin dehydrogenase 1 OS=Arabidopsis thaliana OX=3702 GN=CKX1 PE=1 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 7.8e-66
Identity = 127/206 (61.65%), Postives = 154/206 (74.76%), Query Frame = 0


Query: 16  LKLYIILYISCIPD----SRNHLYAASIIPPYFGSSDISTYALQTLELDGYLSFENNHQA 75
           L +++IL +SCIP       NH  +     P    SDI + +L +L+L+GY+SF++ H  
Sbjct: 18  LGIFMILVLSCIPGRTNLCSNHSVSTPKELPSSNPSDIRS-SLVSLDLEGYISFDDVHNV 77

Query: 76  ATDFGKRYHLLPLAVLHPSSVSDISRTINHIFRMGYVSELTVAARGHGHSIQGQAQAYNG 135
           A DFG RY L PLA+LHP SV DIS  + HI  +G  S LTVAARGHGHS+QGQA A+ G
Sbjct: 78  AKDFGNRYQLPPLAILHPRSVFDISSMMKHIVHLGSTSNLTVAARGHGHSLQGQALAHQG 137

Query: 136 VVISMESFQGPEMKINAGDLPYVDVSAGELWINILHETLKLGLAPKSWTDYLHLTVGGTL 195
           VVI MES + P+++I  G  PYVDVS GE+WINIL ETLK GL+PKSWTDYLHLTVGGTL
Sbjct: 138 VVIKMESLRSPDIRIYKGKQPYVDVSGGEIWINILRETLKYGLSPKSWTDYLHLTVGGTL 197

Query: 196 SNAGISGQAFRHGPQISNVYQLEVVT 218
           SNAGISGQAF+HGPQI+NVYQLE+VT
Sbjct: 198 SNAGISGQAFKHGPQINNVYQLEIVT 222

[Close]

BLAST of Carg24998-RA vs. Swiss-Prot
Match: sp|Q9LY71|CKX6_ARATH (Cytokinin dehydrogenase 6 OS=Arabidopsis thaliana OX=3702 GN=CKX6 PE=2 SV=2)

HSP 1 Score: 244.6 bits (623), Expect = 1.2e-63
Identity = 126/210 (60.00%), Postives = 157/210 (74.76%), Query Frame = 0


Query: 10  KKSIIVLKLYIILYISCIPDSRNHLYAASIIPPYFGSSDISTYALQTLELDGYLSFENNH 69
           K+++++++ + IL +SCI       +++SI             +L+ L L G+L FE+ H
Sbjct: 11  KRTMLIVRSFTILLLSCIAFKLACCFSSSI------------SSLKALPLVGHLEFEHVH 70

Query: 70  QAATDFGKRYHLLPLAVLHPSSVSDISRTINHIFRMGYVSELTVAARGHGHSIQGQAQAY 129
            A+ DFG RY L+PLAVLHP SVSDI+ TI HI+ MG  S+LTVAARG GHS+QGQAQ  
Sbjct: 71  HASKDFGNRYQLIPLAVLHPKSVSDIASTIRHIWMMGTHSQLTVAARGRGHSLQGQAQTR 130

Query: 130 NGVVISMESFQGPEMKINAGD--LPYVDVSAGELWINILHETLKLGLAPKSWTDYLHLTV 189
           +G+VI MES    ++++ + D   PYVDVS GELWINILHETLK GLAPKSWTDYLHLTV
Sbjct: 131 HGIVIHMESLHPQKLQVYSVDSPAPYVDVSGGELWINILHETLKYGLAPKSWTDYLHLTV 190

Query: 190 GGTLSNAGISGQAFRHGPQISNVYQLEVVT 218
           GGTLSNAGISGQAFRHGPQISNV+QLE+VT
Sbjct: 191 GGTLSNAGISGQAFRHGPQISNVHQLEIVT 208

[Close]

BLAST of Carg24998-RA vs. Swiss-Prot
Match: sp|Q75K78|CKX9_ORYSJ (Cytokinin dehydrogenase 9 OS=Oryza sativa subsp. japonica OX=39947 GN=CKX9 PE=2 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 8.3e-60
Identity = 111/165 (67.27%), Postives = 129/165 (78.18%), Query Frame = 0


Query: 53  ALQTLELDGYLSFENNHQAATDFGKRYHLLPLAVLHPSSVSDISRTINHIFRMGYVSELT 112
           +L+ L LDG+ SF +   AA DFG      P+AVLHP SV+DI+ TI H+F MG  S LT
Sbjct: 33  SLEELTLDGHFSFHDVSAAAQDFGNLSSFPPVAVLHPGSVADIATTIRHVFLMGEHSTLT 92

Query: 113 VAARGHGHSIQGQAQAYNGVVISMESFQGPEMKINAGDLPYVDVSAGELWINILHETLKL 172
           VAARGHGHS+ GQ+QA  G++ISMES Q   M++N G  PYVD S GELWIN+LHETLK 
Sbjct: 93  VAARGHGHSLYGQSQAAEGIIISMESLQSNTMRVNPGVSPYVDASGGELWINVLHETLKY 152

Query: 173 GLAPKSWTDYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVT 218
           GLAPKSWTDYLHLTVGGTLSNAG+SGQ FRHGPQISNV +LE+VT
Sbjct: 153 GLAPKSWTDYLHLTVGGTLSNAGVSGQTFRHGPQISNVNELEIVT 197

[Close]

BLAST of Carg24998-RA vs. Swiss-Prot
Match: sp|Q5JLP4|CKX4_ORYSJ (Cytokinin dehydrogenase 4 OS=Oryza sativa subsp. japonica OX=39947 GN=CKX4 PE=2 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.7e-57
Identity = 106/168 (63.10%), Postives = 130/168 (77.38%), Query Frame = 0


Query: 53  ALQTLELDGYLSFENNHQAATDFGKRYHLLPLAVLHPSSVSDISRTINHIFRMGYVSELT 112
           +L  L LDG+ SF++ H AA DFG R  LLP AVLHP SVSD++ T+  +F++G  S LT
Sbjct: 37  SLGALRLDGHFSFDDAHAAARDFGNRCSLLPAAVLHPGSVSDVAATVRRVFQLGRSSPLT 96

Query: 113 VAARGHGHSIQGQAQAYNGVVISMESFQGP---EMKINAGDLPYVDVSAGELWINILHET 172
           VAARGHGHS+ GQ+QA  G+V+ MES        ++++ G  P+VD   GELWIN+LHET
Sbjct: 97  VAARGHGHSLLGQSQAAGGIVVKMESLAAAAARAVRVHGGASPHVDAPGGELWINVLHET 156

Query: 173 LKLGLAPKSWTDYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVT 218
           LK GLAP+SWTDYLHLTVGGTLSNAG+SGQAFRHGPQ+SNV QLE+VT
Sbjct: 157 LKHGLAPRSWTDYLHLTVGGTLSNAGVSGQAFRHGPQVSNVNQLEIVT 204

[Close]

BLAST of Carg24998-RA vs. Swiss-Prot
Match: sp|Q67YU0|CKX5_ARATH (Cytokinin dehydrogenase 5 OS=Arabidopsis thaliana OX=3702 GN=CKX5 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.4e-38
Identity = 89/166 (53.61%), Postives = 114/166 (68.67%), Query Frame = 0


Query: 57  LELDGYLSFENNHQA--ATDFGK-RYHLLPLAVLHPSSVSDISRTINHIFRMGYVSELTV 116
           +++DG+ +   +  A  ++DFG  +    PLAVLHPSS  D++R +   +  G  +   V
Sbjct: 38  IDVDGHFTVHPSDLASVSSDFGMLKSPEEPLAVLHPSSAEDVARLVRTAY--GSATAFPV 97

Query: 117 AARGHGHSIQGQAQA-YNGVVISM-ESFQGPEMKINAGDLPYVDVSAGELWINILHETLK 176
           +ARGHGHSI GQA A  NGVV+ M     G    +   D  YVDV  GELW+++L +TL+
Sbjct: 98  SARGHGHSINGQAAAGRNGVVVEMNHGVTGTPKPLVRPDEMYVDVWGGELWVDVLKKTLE 157

Query: 177 LGLAPKSWTDYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVT 218
            GLAPKSWTDYL+LTVGGTLSNAGISGQAF HGPQISNV +L+VVT
Sbjct: 158 HGLAPKSWTDYLYLTVGGTLSNAGISGQAFHHGPQISNVLELDVVT 201

[Close]

BLAST of Carg24998-RA vs. TrEMBL
Match: tr|A0A1S3CLV0|A0A1S3CLV0_CUCME (cytokinin dehydrogenase 1 OS=Cucumis melo OX=3656 GN=LOC103502439 PE=4 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 7.7e-103
Identity = 189/212 (89.15%), Postives = 199/212 (93.87%), Query Frame = 0


Query: 6   SGFIKKSIIVLKLYIILYISCIPDSRNHLYAASIIPPYFGSSDISTYALQTLELDGYLSF 65
           SGFIK++II L+LYIILYIS IPDS N L+AAS IPP+FGSSDISTYALQTLELDGYLSF
Sbjct: 6   SGFIKQTIIFLELYIILYISYIPDSTNRLFAASTIPPHFGSSDISTYALQTLELDGYLSF 65

Query: 66  ENNHQAATDFGKRYHLLPLAVLHPSSVSDISRTINHIFRMGYVSELTVAARGHGHSIQGQ 125
           +NNHQAATDFG RYH LPLAVLHP SV+DIS  INHIFRMGY S+LTVAARGHGHSIQGQ
Sbjct: 66  DNNHQAATDFGNRYHSLPLAVLHPKSVADISSMINHIFRMGYASDLTVAARGHGHSIQGQ 125

Query: 126 AQAYNGVVISMESFQGPEMKINAGDLPYVDVSAGELWINILHETLKLGLAPKSWTDYLHL 185
           AQAYNGVVISMESF+G EMKINAG+LPYVDVSAGELWINILHETLK GLAPKSWTDYLHL
Sbjct: 126 AQAYNGVVISMESFKGTEMKINAGELPYVDVSAGELWINILHETLKQGLAPKSWTDYLHL 185

Query: 186 TVGGTLSNAGISGQAFRHGPQISNVYQLEVVT 218
           TVGGTLSNAGISGQAFRHGPQISNVYQLEVVT
Sbjct: 186 TVGGTLSNAGISGQAFRHGPQISNVYQLEVVT 217

[Close]

BLAST of Carg24998-RA vs. TrEMBL
Match: tr|A0A0A0L1T0|A0A0A0L1T0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G343590 PE=4 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.0e-102
Identity = 189/212 (89.15%), Postives = 199/212 (93.87%), Query Frame = 0


Query: 6   SGFIKKSIIVLKLYIILYISCIPDSRNHLYAASIIPPYFGSSDISTYALQTLELDGYLSF 65
           SGFIK++II LKLYIILYIS IPDS N L+AAS IPP+FGSSDISTYALQTLELDG+LSF
Sbjct: 6   SGFIKQTIIFLKLYIILYISYIPDSTNRLFAASTIPPHFGSSDISTYALQTLELDGHLSF 65

Query: 66  ENNHQAATDFGKRYHLLPLAVLHPSSVSDISRTINHIFRMGYVSELTVAARGHGHSIQGQ 125
           +NNHQAATDFG RYH LPLAVLHP SV+DIS  INHIFRMGY S+LTVAARGHGHSIQGQ
Sbjct: 66  DNNHQAATDFGNRYHSLPLAVLHPKSVADISSMINHIFRMGYASDLTVAARGHGHSIQGQ 125

Query: 126 AQAYNGVVISMESFQGPEMKINAGDLPYVDVSAGELWINILHETLKLGLAPKSWTDYLHL 185
           AQAYNGVVISMESF+G EMKINAG+LPYVDVSAGELWINILHETLK GLAPKSWTDYLHL
Sbjct: 126 AQAYNGVVISMESFKGTEMKINAGELPYVDVSAGELWINILHETLKQGLAPKSWTDYLHL 185

Query: 186 TVGGTLSNAGISGQAFRHGPQISNVYQLEVVT 218
           TVGGTLSNAGISGQAFRHGPQISNVYQLEVVT
Sbjct: 186 TVGGTLSNAGISGQAFRHGPQISNVYQLEVVT 217

[Close]

BLAST of Carg24998-RA vs. TrEMBL
Match: tr|A0A2I4G6V1|A0A2I4G6V1_9ROSI (cytokinin dehydrogenase 1-like isoform X1 OS=Juglans regia OX=51240 GN=LOC109005247 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 3.2e-80
Identity = 152/215 (70.70%), Postives = 178/215 (82.79%), Query Frame = 0


Query: 8   FIKK-SIIVLKLYIILYISCIPD----SRNHLYAASIIPPYFGSSDISTYALQTLELDGY 67
           F+K+ +II LK+ ++L++SCIPD      N+ +A   +PP F S++IS  +L+TL LDGY
Sbjct: 128 FLKQNNIIHLKILMVLFLSCIPDRTNLCSNNSFATLTVPPRFNSTNISLSSLETLTLDGY 187

Query: 68  LSFENNHQAATDFGKRYHLLPLAVLHPSSVSDISRTINHIFRMGYVSELTVAARGHGHSI 127
            SFENNH AA DFG  YH LP AVLHP SVSDIS TI HIF+MG  SELTVAARGH HSI
Sbjct: 188 FSFENNHHAAKDFGNLYHFLPSAVLHPKSVSDISTTIRHIFKMGSASELTVAARGHAHSI 247

Query: 128 QGQAQAYNGVVISMESFQGPEMKINAGDLPYVDVSAGELWINILHETLKLGLAPKSWTDY 187
           QGQAQA+ G+VI+MES QG +M+++ GD+PYVDVS GELWINILHETLK GLAPKSWTDY
Sbjct: 248 QGQAQAHQGIVINMESLQGLKMQVHTGDMPYVDVSGGELWINILHETLKHGLAPKSWTDY 307

Query: 188 LHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVT 218
           LHLTVGGTLSNAGISGQAF+HGPQI+NVYQLEVVT
Sbjct: 308 LHLTVGGTLSNAGISGQAFQHGPQINNVYQLEVVT 342

[Close]

BLAST of Carg24998-RA vs. TrEMBL
Match: tr|A0A2I4G6V9|A0A2I4G6V9_9ROSI (cytokinin dehydrogenase 1-like isoform X2 OS=Juglans regia OX=51240 GN=LOC109005247 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 3.2e-80
Identity = 152/215 (70.70%), Postives = 178/215 (82.79%), Query Frame = 0


Query: 8   FIKK-SIIVLKLYIILYISCIPD----SRNHLYAASIIPPYFGSSDISTYALQTLELDGY 67
           F+K+ +II LK+ ++L++SCIPD      N+ +A   +PP F S++IS  +L+TL LDGY
Sbjct: 128 FLKQNNIIHLKILMVLFLSCIPDRTNLCSNNSFATLTVPPRFNSTNISLSSLETLTLDGY 187

Query: 68  LSFENNHQAATDFGKRYHLLPLAVLHPSSVSDISRTINHIFRMGYVSELTVAARGHGHSI 127
            SFENNH AA DFG  YH LP AVLHP SVSDIS TI HIF+MG  SELTVAARGH HSI
Sbjct: 188 FSFENNHHAAKDFGNLYHFLPSAVLHPKSVSDISTTIRHIFKMGSASELTVAARGHAHSI 247

Query: 128 QGQAQAYNGVVISMESFQGPEMKINAGDLPYVDVSAGELWINILHETLKLGLAPKSWTDY 187
           QGQAQA+ G+VI+MES QG +M+++ GD+PYVDVS GELWINILHETLK GLAPKSWTDY
Sbjct: 248 QGQAQAHQGIVINMESLQGLKMQVHTGDMPYVDVSGGELWINILHETLKHGLAPKSWTDY 307

Query: 188 LHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVT 218
           LHLTVGGTLSNAGISGQAF+HGPQI+NVYQLEVVT
Sbjct: 308 LHLTVGGTLSNAGISGQAFQHGPQINNVYQLEVVT 342

[Close]

BLAST of Carg24998-RA vs. TrEMBL
Match: tr|A0A2P4IFA4|A0A2P4IFA4_QUESU (Cytokinin dehydrogenase 1 OS=Quercus suber OX=58331 GN=CFP56_68599 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 6.1e-76
Identity = 151/223 (67.71%), Postives = 172/223 (77.13%), Query Frame = 0


Query: 1   MRVPTSGFIKKSIIVLKLYIILYISCIPDSR----NHLYAASII--PPYFGSSDISTYAL 60
           M  P   F+K +II LK++II ++SC+P+      NH  A   +  PP   S++I + +L
Sbjct: 1   MGSPALIFLKHNIIYLKVFIIFFLSCVPNGTNLCPNHSPATLKVQRPPRLNSTNIVS-SL 60

Query: 61  QTLELDGYLSFENNHQAATDFGKRYHLLPLAVLHPSSVSDISRTINHIFRMGYVSELTVA 120
           +TL LDGY SFENNH AA DFG  YH LP AVLHP SV DIS TI HI+ MG  SELTVA
Sbjct: 61  ETLGLDGYFSFENNHHAAKDFGNMYHFLPSAVLHPKSVQDISNTIRHIYEMGSASELTVA 120

Query: 121 ARGHGHSIQGQAQAYNGVVISMESFQGPEMKINAGDLPYVDVSAGELWINILHETLKLGL 180
           ARGHGHS QGQAQA+ GVVI+MES Q  EM+++ G  PYVDVS GELWINILHETLK GL
Sbjct: 121 ARGHGHSTQGQAQAHQGVVINMESLQRLEMQVHTGKTPYVDVSGGELWINILHETLKHGL 180

Query: 181 APKSWTDYLHLTVGGTLSNAGISGQAFRHGPQISNVYQLEVVT 218
           APKSWTDYLHLTVGGTLSNAGISGQAF+HGPQISNVYQLEVVT
Sbjct: 181 APKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVYQLEVVT 222

The following BLAST results are available for this feature:

BLAST of Carg24998-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928590.1	1.2e-118	99.54	cytokinin dehydrogenase 1-like [Cucurbita moschata]	[more]
XP_023543218.1	9.8e-118	99.08	cytokinin dehydrogenase 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022967768.1	3.5e-115	96.31	cytokinin dehydrogenase 1-like [Cucurbita maxima]	[more]
XP_022966269.1	2.1e-104	88.02	cytokinin dehydrogenase 1-like [Cucurbita maxima]	[more]
XP_022925103.1	4.7e-104	88.02	cytokinin dehydrogenase 1-like [Cucurbita moschata]	[more]

BLAST of Carg24998-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G41510.1	4.3e-67	61.65	cytokinin oxidase/dehydrogenase 1	[more]
AT3G63440.1	6.9e-65	60.00	cytokinin oxidase/dehydrogenase 6	[more]
AT1G75450.1	1.3e-39	53.61	cytokinin oxidase 5	[more]
AT5G56970.1	2.7e-37	54.00	cytokinin oxidase 3	[more]
AT5G21482.1	1.2e-32	50.66	cytokinin oxidase 7	[more]

BLAST of Carg24998-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O22213\|CKX1_ARATH	7.8e-66	61.65	Cytokinin dehydrogenase 1 OS=Arabidopsis thaliana OX=3702 GN=CKX1 PE=1 SV=1	[more]
sp\|Q9LY71\|CKX6_ARATH	1.2e-63	60.00	Cytokinin dehydrogenase 6 OS=Arabidopsis thaliana OX=3702 GN=CKX6 PE=2 SV=2	[more]
sp\|Q75K78\|CKX9_ORYSJ	8.3e-60	67.27	Cytokinin dehydrogenase 9 OS=Oryza sativa subsp. japonica OX=39947 GN=CKX9 PE=2 ...	[more]
sp\|Q5JLP4\|CKX4_ORYSJ	1.7e-57	63.10	Cytokinin dehydrogenase 4 OS=Oryza sativa subsp. japonica OX=39947 GN=CKX4 PE=2 ...	[more]
sp\|Q67YU0\|CKX5_ARATH	2.4e-38	53.61	Cytokinin dehydrogenase 5 OS=Arabidopsis thaliana OX=3702 GN=CKX5 PE=2 SV=1	[more]

BLAST of Carg24998-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CLV0\|A0A1S3CLV0_CUCME	7.7e-103	89.15	cytokinin dehydrogenase 1 OS=Cucumis melo OX=3656 GN=LOC103502439 PE=4 SV=1	[more]
tr\|A0A0A0L1T0\|A0A0A0L1T0_CUCSA	1.0e-102	89.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G343590 PE=4 SV=1	[more]
tr\|A0A2I4G6V1\|A0A2I4G6V1_9ROSI	3.2e-80	70.70	cytokinin dehydrogenase 1-like isoform X1 OS=Juglans regia OX=51240 GN=LOC109005...	[more]
tr\|A0A2I4G6V9\|A0A2I4G6V9_9ROSI	3.2e-80	70.70	cytokinin dehydrogenase 1-like isoform X2 OS=Juglans regia OX=51240 GN=LOC109005...	[more]
tr\|A0A2P4IFA4\|A0A2P4IFA4_QUESU	6.1e-76	67.71	Cytokinin dehydrogenase 1 OS=Quercus suber OX=58331 GN=CFP56_68599 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0071949	FAD binding
GO:0016491	oxidoreductase activity
GO:0050660	flavin adenine dinucleotide binding
GO:0003824	catalytic activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

Vocabulary: **INTERPRO**
Term	Definition
IPR036318	FAD-bd_2-like_sf
IPR016166	FAD-bd_2
IPR006093	Oxy_OxRdtase_FAD_BS
IPR006094	Oxid_FAD_bind_N
IPR016167	FAD-bd_2_sub1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0071949	FAD binding
molecular_function	GO:0050660	flavin adenine dinucleotide binding
molecular_function	GO:0016491	oxidoreductase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg24998	Carg24998	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg24998-RA	Carg24998-RA-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24998-RA.CDS.3	Carg24998-RA.CDS.3	CDS
Carg24998-RA.CDS.2	Carg24998-RA.CDS.2	CDS
Carg24998-RA.CDS.1	Carg24998-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24998-RA.exon.3	Carg24998-RA.exon.3	exon
Carg24998-RA.exon.2	Carg24998-RA.exon.2	exon
Carg24998-RA.exon.1	Carg24998-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016167	FAD-binding, type 2, subdomain 1	GENE3D	G3DSA:3.30.43.10		coord: 54..135 e-value: 6.7E-67 score: 227.8
IPR006094	FAD linked oxidase, N-terminal	PFAM	PF01565	FAD_binding_4	coord: 83..218 e-value: 4.3E-15 score: 55.6
None	No IPR available	GENE3D	G3DSA:3.30.465.10		coord: 136..218 e-value: 6.7E-67 score: 227.8
None	No IPR available	PANTHER	PTHR13878	GULONOLACTONE OXIDASE	coord: 4..218
None	No IPR available	PANTHER	PTHR13878:SF69	CYTOKININ DEHYDROGENASE 1	coord: 4..218
IPR006093	Oxygen oxidoreductase covalent FAD-binding site	PROSITE	PS00862	OX2_COVAL_FAD	coord: 83..118
IPR016166	FAD-binding, type 2	PROSITE	PS51387	FAD_PCMH	coord: 79..263 score: 9.022
IPR036318	FAD-binding, type 2-like superfamily	SUPERFAMILY	SSF56176	FAD-binding/transporter-associated domain-like	coord: 65..218