Carg24863-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTAATTAATATATATATTTTTTAAATTTAAAATTTAAGTAAAGAATTTTGTCAAAAGACGACGACTGAGAACCGTGGTTCTGGTTCTCTACTGCTTGCTTCGACCGAAAATGGCGTCTGTTCTGCAACTCCCAATCATCGACCTCTCCTCTCAAGACCGCGCCTCTGTTGCTCTCTCAATCCATGAGGTTCGTCGTATGATTTCCAAATCAACTCTCTCCATCGTTTTCCCTAACAGATTCTGATATTAATCTGTTTTCTTGGATTGGAAATTACGCACAGGCATGCTTGGATTACGGATTCTTTTACTTGATCAACCATGGCGTTGAAGACGAATTGCTCGAGAGAGTGTTTGACGAAAGTAGGAAGTTCTTTTCTCTTCCTATTGAGGAGAAGATGAAACTTGCTCGGAAGGAACATAGGGGATACACCGCTCTTTATGCCGAGAAGCTCGATCCCACCGCCTCGACTGATATAGGTTTTTGTTCTATTTTGATTTGAAATTTATGAATCTCGTCTGTTTATCTTGTGAAATTTGGGAGAAATTTGAACTGTGAGAGCTGTGTAAATGGTAGTTCTGCCGGGCTGTTGCTCCGAGCTTCTGAATGTTGTATGAAATGGTCTAAGAAAACCAATTAGTAAGTAAACTAACTATAAGGTTAAAGTGATTAGAATAGCTATAACTTCTAGATTGAGACACTTTTGTTAATGTTGTTTATAGATATGATGGCTGTGAAAATGCAACAATCCGGATTATATGAACTCTATTAGATGAGGTGTGCGCAAGCTGACCCAGACAATCGTTGATATTTGAAAAAAAGATTGATTGCATATGGTTTTACAGAAAGGTGAAAAGATGGTATATCCATGGACAATACTAGTCCACATTTTAGTGTTTTGTTTGACTGTAAATGACCATTTCCTAGTAGGGAGAGTGGATTGACTCGATAAAAGAACAAAAATGTGAGATCCCACATTGGTTCGAGGGGGCAACGAAACATTCTTTATAAAGGTGTGAAAACCTCTATTTAGTAGATGCGTTTTGAAACCTTGAGTGAAAGCCTGAAAGGGAAAGTCCAAAGAGAACAATACCTGATAGTGGTGGGCTTGGGCCATTACAAATGGTATCAAATGCGTTAGCGATGACGTTGGGCCCACAAGGGGGTGGATTGTGAGATCCCACATTGGTTCGAGGGGGGAAGCATTCCTTATAAAGGTGTGAAGACCTCCTGGTTATGAGATTCCACATTGGTTTGAGGGGGGAACATTCTTTATAAGGGTGTGAAAAAACCTACCTAGTAGACGCAATATCAGAGGACAATATTTGCTAGCGATGCGTTTTAAAAACCTTGAGAGGAAGCCCGAAAGGGAAATTCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGGGTCGTTACAAAAAAATTGATAACAAGAGTAAGAATCTTAAAAAATATCCAATACTCGTATCATCATTGAATTGTAAATGGTTCAGATTGGAAACTAATGCACAATCTCTACCGTTATTGAAGATTTGGTGTTCGAGAAAAGTTGTTTATCTTTGTATCTATGAATTTTCTGTGAATAGGGGATGCAAAAGAGAGCTATTATATTGGCCCTTTGGCAGGCAACGCAACTGAAAATGACTTAAATCAGTGGCCTTCAGGAGGTGAGGAATTACCCTATTAATGGTAGAAATTTGGAATCATTGATTATTCATGTTTATGAACTATTACTCTTTCTGGCAAGGAAATGGCAGAACTATTGCCTTCTTGGAGAGCTACTATGGAATCCTTCTATAAGCAAGCACTGTAAGTTCAAATGCCTTCAGGATTAATTTCAATACATACTGGTACTTACAGTGCAATAAAATTGGTACTATGTTGTTTTAAATTCATGTTTTGTTCATTGTACTCGAAAGTATTCTTATCTCGTTTATGCTGGACAGCTAAATGAATTTGGACTGGCTGTAATGTCTTGCTTTCTGTTTGGCTGGTACAGGCGTGTTGGAAGACAAATAATATCTTTGCTTGCATTGGCTCTGAATCTGGATGAGAATTTCTTTGAGAAAATTGGTGCCTTCAGTAAACCATCAGATTTTCTTCGGCTTCTACACTATCCAGGTTCAGTGACATACGTAACTTTTAATTACTGAAACTAAAGGGGAGAAAAGAAGCATATGTTCGTTTTTTCTTCCTGTCCCCCAAACCAAACATTTATGCTGAATTTTGTAAAGGATAAAATTTAAAGATGATGAAGATGAAATTTAAAGAAGTGTGATGAAATTTAATGGTCTATGGAAATGATTTTCAATCTTAGCGAGGATCCGACAAAATTGCAAACCATATGAATAGCAAAGGGGTAGAATGATTCTCCTTCCCTCATTCTCATTTCCTTATAAGTTAATGATGTACTTGGTCAGCTAACGACCTAAGCCCGCTACTAACATATATTGTCTTCTTTGGACTTTTCCTTTTGAGATTTCTCTCAAGGTTTTAAAAACGCGCCTTCTAGGGAGAGGTTTCCACACCCTTATAAAGAATGTTTCGTTATTCTTCTCGACGGACATGGAATTTCACTTTTTGTGTTATTCTTGTCAATGGTGATTTTTTGAAGTTCAAATATCTCTCTCCATTTTGCAGGTTGCTTTCTTCTTACATCCGAGTGACGAATGTGTCGTGGAATGTCTTCCAAGTTGTTGTAGCGAGTCATCTCCCCCGAGGTATTGACATTCCTTACTTTTATAATATTATCCCCAGAATCTCTCCGTTCCCATAGTGAATTTGATCCAATAATAATCTTATAGGACTGTTCTACGGAACTAATCGTATGAAGTTGTGTTCTAAGAAGAATTACAATGCTCTTTCTCCAATTTTTTGGCTACTCGAGTCGTTTTACCATACCACTTCAATTCAACTGAATATAACCTTAAAAACTAAAATTATAAGATCTCACATCGATTGGAAAAAGAAACGAGTGCCAGCAAAGACGCTAGGCCTCGAGGGTAGTAGATTGTGAGATGTCACGTTGGTTGGAGAAGGGAATGAAATATTCTTTACAAGGGTGTGGAAACCTCTACTTAGTAGATACATTTTAAGAACCTTGAGGGGAAGTCCGAAAGGAAAAGCCCAAAGATGACCATATTTGTTAGCGGTGGGCTAGAGTTGTTACAAAAATGTTCTTATAGAAAAGCCAAGATCAATCTGGAATGAATTCTAATGTCGTTTAGTTTGAACACAATCCTTGGACCATCTCCATGCTTCTCTGACTTTATGCATCTATTGCTAGTTACAAGTTTTATTGGCAGTTTTACGAGTAGAAATACGTGGAAGAACATTGATCATCATGATTTAGAGTTAGCAAAAACAAAAGCTAATAGAAAAAAGAATAGAGGTATTTTACTGGTATATGCTTATGTTTTTAGTGATGCTTATGGATTACTTGCTGGATCGAACCCAAAAATGTCTCGATATTCATAGATTATTTGAAATTTTTTCTTATCATGATCTCCGAAACAACTACAAATTTAATTGCTTAAAGTCTTCAAGATTATTGAATGTGCATGCAGATATCCTCCCATTTCCAGTATGGACTACTTGAAAGAACGTGTGAGGTTGGCTTATAAAGACGGATTTGCTTAGAAAATGTAAGATTCACTCCTCTCACTTCTATGTTTTTAGATCAAATTTAGATCAAGAAGCTTAAAAAGACGTTCATTTACATCATCACTAATGGATAAAGACCCGATATGTATGCTAATTAATCTGATAACCTTGTCAAAATTTACCTAGTGAATGTGTTATCATGTTACTGCCTTGACAATGACGTTAACGATAGAGATTAAAATTATGAAAATTATTAAAAGTGAAAGTATTAAGGTTTTTTTTTTATTAATTTAATTTTAATCCATTCCAGATCTAAAGAACGTGAGCCGCCACGTGGATGGCCAGATGAGTGGGACCCACGTTATCTATTTTCTTGCCGTCTGATCATCTCTTGTGGGGCCCATTAATATAGAGATAAAAATTAAAATAAAATAAGAAATGGATAAACTTTTCATAAAGCGTTTTCAAAAGCTAAGATGTCTGTACCTTTGGATAAGATGGGATAGGTGACTCAATTCATTTTTCCCCCCTTTTAAATAATTTAAAATTTATTTA CTTAATTAATATATATATTTTTTAAATTTAAAATTTAAGTAAAGAATTTTGTCAAAAGACGACGACTGAGAACCGTGGTTCTGGTTCTCTACTGCTTGCTTCGACCGAAAATGGCGTCTGTTCTGCAACTCCCAATCATCGACCTCTCCTCTCAAGACCGCGCCTCTGTTGCTCTCTCAATCCATGAGGCATGCTTGGATTACGGATTCTTTTACTTGATCAACCATGGCGTTGAAGACGAATTGCTCGAGAGAGTGTTTGACGAAAGTAGGAAGTTCTTTTCTCTTCCTATTGAGGAGAAGATGAAACTTGCTCGGAAGGAACATAGGGGATACACCGCTCTTTATGCCGAGAAGCTCGATCCCACCGCCTCGACTGATATAGGGGATGCAAAAGAGAGCTATTATATTGGCCCTTTGGCAGGCAACGCAACTGAAAATGACTTAAATCAGTGGCCTTCAGGAGAACTATTGCCTTCTTGGAGAGCTACTATGGAATCCTTCTATAAGCAAGCACTGCGTGTTGGAAGACAAATAATATCTTTGCTTGCATTGGCTCTGAATCTGGATGAGAATTTCTTTGAGAAAATTGGTGCCTTCAGTAAACCATCAGATTTTCTTCGGCTTCTACACTATCCAGATCTAAAGAACGTGAGCCGCCACGTGGATGGCCAGATGAGTGGGACCCACGTTATCTATTTTCTTGCCGTCTGATCATCTCTTGTGGGGCCCATTAATATAGAGATAAAAATTAAAATAAAATAAGAAATGGATAAACTTTTCATAAAGCGTTTTCAAAAGCTAAGATGTCTGTACCTTTGGATAAGATGGGATAGGTGACTCAATTCATTTTTCCCCCCTTTTAAATAATTTAAAATTTATTTA ATGGCGTCTGTTCTGCAACTCCCAATCATCGACCTCTCCTCTCAAGACCGCGCCTCTGTTGCTCTCTCAATCCATGAGGCATGCTTGGATTACGGATTCTTTTACTTGATCAACCATGGCGTTGAAGACGAATTGCTCGAGAGAGTGTTTGACGAAAGTAGGAAGTTCTTTTCTCTTCCTATTGAGGAGAAGATGAAACTTGCTCGGAAGGAACATAGGGGATACACCGCTCTTTATGCCGAGAAGCTCGATCCCACCGCCTCGACTGATATAGGGGATGCAAAAGAGAGCTATTATATTGGCCCTTTGGCAGGCAACGCAACTGAAAATGACTTAAATCAGTGGCCTTCAGGAGAACTATTGCCTTCTTGGAGAGCTACTATGGAATCCTTCTATAAGCAAGCACTGCGTGTTGGAAGACAAATAATATCTTTGCTTGCATTGGCTCTGAATCTGGATGAGAATTTCTTTGAGAAAATTGGTGCCTTCAGTAAACCATCAGATTTTCTTCGGCTTCTACACTATCCAGATCTAAAGAACGTGAGCCGCCACGTGGATGGCCAGATGAGTGGGACCCACGTTATCTATTTTCTTGCCGTCTGA MASVLQLPIIDLSSQDRASVALSIHEACLDYGFFYLINHGVEDELLERVFDESRKFFSLPIEEKMKLARKEHRGYTALYAEKLDPTASTDIGDAKESYYIGPLAGNATENDLNQWPSGELLPSWRATMESFYKQALRVGRQIISLLALALNLDENFFEKIGAFSKPSDFLRLLHYPDLKNVSRHVDGQMSGTHVIYFLAV
BLAST of Carg24863-RA vs. NCBI nr
Match: XP_022923378.1 (2-oxoglutarate-Fe(II) type oxidoreductase-like isoform X1 [Cucurbita moschata] >XP_022923379.1 2-oxoglutarate-Fe(II) type oxidoreductase-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 357.1 bits (915), Expect = 4.0e-95 Identity = 179/188 (95.21%), Postives = 183/188 (97.34%), Query Frame = 0
BLAST of Carg24863-RA vs. NCBI nr
Match: XP_022923380.1 (2-oxoglutarate-Fe(II) type oxidoreductase-like isoform X2 [Cucurbita moschata] >XP_022923381.1 2-oxoglutarate-Fe(II) type oxidoreductase-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 357.1 bits (915), Expect = 4.0e-95 Identity = 179/188 (95.21%), Postives = 183/188 (97.34%), Query Frame = 0
BLAST of Carg24863-RA vs. NCBI nr
Match: XP_023552453.1 (2-oxoglutarate-Fe(II) type oxidoreductase-like [Cucurbita pepo subsp. pepo] >XP_023552454.1 2-oxoglutarate-Fe(II) type oxidoreductase-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 351.7 bits (901), Expect = 1.7e-93 Identity = 175/188 (93.09%), Postives = 181/188 (96.28%), Query Frame = 0
BLAST of Carg24863-RA vs. NCBI nr
Match: XP_022965116.1 (2-oxoglutarate-Fe(II) type oxidoreductase-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 347.8 bits (891), Expect = 2.4e-92 Identity = 173/188 (92.02%), Postives = 179/188 (95.21%), Query Frame = 0
BLAST of Carg24863-RA vs. NCBI nr
Match: XP_022965114.1 (2-oxoglutarate-Fe(II) type oxidoreductase-like isoform X1 [Cucurbita maxima] >XP_022965115.1 2-oxoglutarate-Fe(II) type oxidoreductase-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 347.8 bits (891), Expect = 2.4e-92 Identity = 173/188 (92.02%), Postives = 179/188 (95.21%), Query Frame = 0
BLAST of Carg24863-RA vs. TAIR10
Match: AT4G16770.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein) HSP 1 Score: 187.6 bits (475), Expect = 7.6e-48 Identity = 94/182 (51.65%), Postives = 128/182 (70.33%), Query Frame = 0
BLAST of Carg24863-RA vs. TAIR10
Match: AT1G35190.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein) HSP 1 Score: 156.4 bits (394), Expect = 1.9e-38 Identity = 83/189 (43.92%), Postives = 117/189 (61.90%), Query Frame = 0
BLAST of Carg24863-RA vs. TAIR10
Match: AT3G46490.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein) HSP 1 Score: 138.3 bits (347), Expect = 5.3e-33 Identity = 75/189 (39.68%), Postives = 109/189 (57.67%), Query Frame = 0
BLAST of Carg24863-RA vs. TAIR10
Match: AT4G16765.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein) HSP 1 Score: 135.6 bits (340), Expect = 3.4e-32 Identity = 68/132 (51.52%), Postives = 92/132 (69.70%), Query Frame = 0
BLAST of Carg24863-RA vs. TAIR10
Match: AT3G46480.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein) HSP 1 Score: 103.6 bits (257), Expect = 1.4e-22 Identity = 61/146 (41.78%), Postives = 85/146 (58.22%), Query Frame = 0
BLAST of Carg24863-RA vs. Swiss-Prot
Match: sp|Q76NT9|ACCO1_DICDI (1-aminocyclopropane-1-carboxylate oxidase OS=Dictyostelium discoideum OX=44689 GN=aco PE=2 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 7.1e-19 Identity = 64/187 (34.22%), Postives = 107/187 (57.22%), Query Frame = 0
BLAST of Carg24863-RA vs. Swiss-Prot
Match: sp|A6BM06|ACCO1_DICMU (1-aminocyclopropane-1-carboxylate oxidase OS=Dictyostelium mucoroides OX=31287 GN=aco PE=3 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 7.1e-19 Identity = 64/187 (34.22%), Postives = 107/187 (57.22%), Query Frame = 0
BLAST of Carg24863-RA vs. Swiss-Prot
Match: sp|Q7LL04|YQK1_SCHPO (UPF0676 protein C1494.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC1494.01 PE=3 SV=2) HSP 1 Score: 95.1 bits (235), Expect = 9.2e-19 Identity = 64/198 (32.32%), Postives = 95/198 (47.98%), Query Frame = 0
BLAST of Carg24863-RA vs. Swiss-Prot
Match: sp|Q4W946|ENCD_ASPFU (2-oxoglutarate-Fe(II) type oxidoreductase OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=encD PE=1 SV=2) HSP 1 Score: 90.5 bits (223), Expect = 2.3e-17 Identity = 61/189 (32.28%), Postives = 98/189 (51.85%), Query Frame = 0
BLAST of Carg24863-RA vs. Swiss-Prot
Match: sp|K0E3U5|ECDK_ASPRU (2-oxoglutarate-dependent dioxygenase ecdK OS=Aspergillus rugulosus OX=41736 GN=ecdK PE=1 SV=1) HSP 1 Score: 85.5 bits (210), Expect = 7.3e-16 Identity = 55/181 (30.39%), Postives = 95/181 (52.49%), Query Frame = 0
BLAST of Carg24863-RA vs. TrEMBL
Match: tr|A0A1S3BKK8|A0A1S3BKK8_CUCME (1-aminocyclopropane-1-carboxylate oxidase-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103490871 PE=3 SV=1) HSP 1 Score: 314.3 bits (804), Expect = 2.0e-82 Identity = 155/188 (82.45%), Postives = 167/188 (88.83%), Query Frame = 0
BLAST of Carg24863-RA vs. TrEMBL
Match: tr|A0A1S3BKL1|A0A1S3BKL1_CUCME (1-aminocyclopropane-1-carboxylate oxidase-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490871 PE=3 SV=1) HSP 1 Score: 314.3 bits (804), Expect = 2.0e-82 Identity = 155/188 (82.45%), Postives = 167/188 (88.83%), Query Frame = 0
BLAST of Carg24863-RA vs. TrEMBL
Match: tr|A0A1S4DX76|A0A1S4DX76_CUCME (1-aminocyclopropane-1-carboxylate oxidase-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490871 PE=3 SV=1) HSP 1 Score: 314.3 bits (804), Expect = 2.0e-82 Identity = 155/188 (82.45%), Postives = 167/188 (88.83%), Query Frame = 0
BLAST of Carg24863-RA vs. TrEMBL
Match: tr|A0A0A0L5G5|A0A0A0L5G5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019380 PE=3 SV=1) HSP 1 Score: 307.4 bits (786), Expect = 2.4e-80 Identity = 150/188 (79.79%), Postives = 168/188 (89.36%), Query Frame = 0
BLAST of Carg24863-RA vs. TrEMBL
Match: tr|A0A059C196|A0A059C196_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E00403 PE=3 SV=1) HSP 1 Score: 253.1 bits (645), Expect = 5.4e-64 Identity = 116/183 (63.39%), Postives = 158/183 (86.34%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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