Carg24721-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGTTCCTAGTAAGCTCGTCGACGTTGAAGAAGAAGACGAAGTAATGCTACCAGGGTTTCGATTTCACCCGACCGACGAAGAGCTCATCGGGTTTTATCTTTGACGAAAGGTCGAGAAGAAACCGATCGCGATCGAAATCATCAAACAACTTGATATCTACAAATATGATCCGTGGGATCTTCCAAGTAAGAAACTTTCGAACGTTTAAGGTGATAGGGTATGGTATATTTAATCTTTTGAACGTATTCTTAACGATAATTTGACGTTTTTTTGTCGGTGAAGAAGTAAGCAATGTGGGAGAGAAAGAATGGTACTTCTTTTGCACTCGAGGGAGGAAGTATAGAAACAGTATAAGACCTAACAGGGTGACCGGGTCAGGGTTTTGGAAAGCAACGGGCATTGATAAACCGATTTTTTCGACACTCAAATCGAATCAAGAGTGCATTGGCCTTAAAAAATCTTTGGTTTACTATAGAGGAAGTGCTGGTAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTAGGCTTCCCTTCAACACAAATAGCCCTCAACACTATCATGCTGTAAGACTTCTTAATTTCCCTCTTTTTTTCCATTTAATTTTCTCGTGACGGATACGTAGGGTTCTCGAGACTTACAGATACATGGTTCTACGTATCGGTTGTTGAATATATGTTCGTTTACGTTTAGGTCATTTTTTAGTAAAATAAATTTGGTTATATGGGTTAACTCTACCGTAGAAGGTACATAAATCCCATTGAAGCGGGTTCTATTCGTTAATATTTCTCCTGTTTTTTTGTGTAACTTTCTCTCTCAGTGACCGATATGAGACTCCATATCAGTTGGGGAGGAGAACGAAACATCCTTTATAAGGGCGTGGAAACCTTTCCCTAGCAGACGCGTTTTAAAAACCTTGAGAGGAAACTCGAAAAGAAAATCTCAAAAAGGACAATGTCTGCTAGCGGTAGGCTTGAGCCGTTACAAATGGTATAAGAACCAAACATTGGACGATGTGCCAGCGAGGAAGCTGTTCCCCGAAGGGGGTAGACACAAGGTTGTGTGTCAGTAAAGACGATGGACCCCAACAGGGGGTGGATTTAGTAGGGGTCCTACATCGATTGGAGAAAGGAACAAGTGTCACCGAGGACGCTGGGCCCTAAAGAGGGGTATATTGTGAGATCCCACTCTTTTAAAGAGTGTGGAAACCAGAGTACCTCCAACTTAAATTAATTAAATGTGATTATAAATCCAATATTTAATTATATCTCTTTTATTTATTTATATATTTACACGTTATTTAGGTTTGAAGGACAAAAAAGTCTTTTTACAAGGTGACATCATCTATTTTTATTAATTTAAATCGTTGATATAGAAGAAATAATTATTTTTATTTAAATTCAACACTACAAAACCATACTTTTCAATTGGACTCAATTTTCACCTTACTATTCTTATTAAATAATTATTGACGTTTTTACTTTCTTGCCCTTCCTTTGAAAAAAAGAAAAGCCCTTGAAGTTTCTTGAATGAGACCTTTATCTTTATTATCTTTTATTCAAAACATTTGACTTTGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATCTTAGTTCACATAATTTATGCTTCTCGGGTCGGTTTTTTAATTTAATGGACAATAATTTATTATCTAAAAAATATATTTTAACAGTGAAAAATGTGCTTCTCGATTGTTTAATGAAATAATGTCTTTTTTATTTAAAAAAATTTTGGGTCGAGTAATTATTATTTATTTATTTAATTATTTAATTATGTTTTTTTTTATTTGAAATATGCAGGAGGTTTGGGACCTTATGTAGAATCTTCAGAAGAATCCCATCAATTAGAAAGTACAGTCCAATAATGTCTCCATACCCTAAGTATCCAAAACCCTAATAATAACTCCTTTCAATCTCACCCTTTTCCAACTCTCATAGACCTTGAAACTAAGCCAAACCCTAGCTTAACCCTACCCTATGCCTCCTTTGAACCCTCTTTTTTTGTACCCGTCGAGCTTTTTGGAACGGCATCGATGGTGGAGGTGCGCGTGGAGGTCGGGATGGAGGAGGAGGAGGAGGCGATATCTTCACTAGTGGAGGTTGGGACGAGTTGCAACTTGTTGTTCAGATGTCACCTTCGACCCTTTTCAATATTTAG ATGGAGGTTCCTAGTAAGCTCGTCGACGTTGAAGAAGAAGACGAAGTCGAGAAGAAACCGATCGCGATCGAAATCATCAAACAACTTGATATCTACAAATATGATCCGTGGGATCTTCCAAAAGTAAGCAATGTGGGAGAGAAAGAATGGTACTTCTTTTGCACTCGAGGGAGGAAGTATAGAAACAGTATAAGACCTAACAGGGTGACCGGGTCAGGGTTTTGGAAAGCAACGGGCATTGATAAACCGATTTTTTCGACACTCAAATCGAATCAAGAGTGCATTGGCCTTAAAAAATCTTTGGTTTACTATAGAGGAAGTGCTGCTTTTTGGAACGGCATCGATGGTGGAGGTGCGCGTGGAGGTCGGGATGGAGGAGGAGGAGGAGGCGATATCTTCACTAGTGGAGGTTGGGACGAGTTGCAACTTGTTGTTCAGATGTCACCTTCGACCCTTTTCAATATTTAG ATGGAGGTTCCTAGTAAGCTCGTCGACGTTGAAGAAGAAGACGAAGTCGAGAAGAAACCGATCGCGATCGAAATCATCAAACAACTTGATATCTACAAATATGATCCGTGGGATCTTCCAAAAGTAAGCAATGTGGGAGAGAAAGAATGGTACTTCTTTTGCACTCGAGGGAGGAAGTATAGAAACAGTATAAGACCTAACAGGGTGACCGGGTCAGGGTTTTGGAAAGCAACGGGCATTGATAAACCGATTTTTTCGACACTCAAATCGAATCAAGAGTGCATTGGCCTTAAAAAATCTTTGGTTTACTATAGAGGAAGTGCTGCTTTTTGGAACGGCATCGATGGTGGAGGTGCGCGTGGAGGTCGGGATGGAGGAGGAGGAGGAGGCGATATCTTCACTAGTGGAGGTTGGGACGAGTTGCAACTTGTTGTTCAGATGTCACCTTCGACCCTTTTCAATATTTAG MEVPSKLVDVEEEDEVEKKPIAIEIIKQLDIYKYDPWDLPKVSNVGEKEWYFFCTRGRKYRNSIRPNRVTGSGFWKATGIDKPIFSTLKSNQECIGLKKSLVYYRGSAAFWNGIDGGGARGGRDGGGGGGDIFTSGGWDELQLVVQMSPSTLFNI
BLAST of Carg24721-RA vs. NCBI nr
Match: XP_022981711.1 (transcription factor JUNGBRUNNEN 1-like [Cucurbita maxima]) HSP 1 Score: 212.2 bits (539), Expect = 1.2e-51 Identity = 146/268 (54.48%), Postives = 151/268 (56.34%), Query Frame = 0
BLAST of Carg24721-RA vs. NCBI nr
Match: XP_023523438.1 (transcription factor JUNGBRUNNEN 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 209.5 bits (532), Expect = 8.0e-51 Identity = 144/273 (52.75%), Postives = 148/273 (54.21%), Query Frame = 0
BLAST of Carg24721-RA vs. NCBI nr
Match: XP_022941189.1 (transcription factor JUNGBRUNNEN 1-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 201.1 bits (510), Expect = 2.8e-48 Identity = 103/131 (78.63%), Postives = 104/131 (79.39%), Query Frame = 0
BLAST of Carg24721-RA vs. NCBI nr
Match: XP_022941190.1 (transcription factor JUNGBRUNNEN 1-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 201.1 bits (510), Expect = 2.8e-48 Identity = 103/131 (78.63%), Postives = 104/131 (79.39%), Query Frame = 0
BLAST of Carg24721-RA vs. NCBI nr
Match: XP_004144678.1 (PREDICTED: transcription factor JUNGBRUNNEN 1 [Cucumis sativus]) HSP 1 Score: 178.7 bits (452), Expect = 1.5e-41 Identity = 96/142 (67.61%), Postives = 102/142 (71.83%), Query Frame = 0
BLAST of Carg24721-RA vs. TAIR10
Match: AT2G43000.1 (NAC domain containing protein 42) HSP 1 Score: 164.1 bits (414), Expect = 7.0e-41 Identity = 73/94 (77.66%), Postives = 84/94 (89.36%), Query Frame = 0
BLAST of Carg24721-RA vs. TAIR10
Match: AT1G26870.1 (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein) HSP 1 Score: 148.3 bits (373), Expect = 4.0e-36 Identity = 67/104 (64.42%), Postives = 84/104 (80.77%), Query Frame = 0
BLAST of Carg24721-RA vs. TAIR10
Match: AT5G39820.1 (NAC domain containing protein 94) HSP 1 Score: 141.4 bits (355), Expect = 4.8e-34 Identity = 65/104 (62.50%), Postives = 81/104 (77.88%), Query Frame = 0
BLAST of Carg24721-RA vs. TAIR10
Match: AT3G12910.1 (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein) HSP 1 Score: 137.1 bits (344), Expect = 9.1e-33 Identity = 66/92 (71.74%), Postives = 74/92 (80.43%), Query Frame = 0
BLAST of Carg24721-RA vs. TAIR10
Match: AT2G02450.2 (NAC domain containing protein 35) HSP 1 Score: 113.2 bits (282), Expect = 1.4e-25 Identity = 54/103 (52.43%), Postives = 71/103 (68.93%), Query Frame = 0
BLAST of Carg24721-RA vs. Swiss-Prot
Match: sp|Q9SK55|NAC42_ARATH (Transcription factor JUNGBRUNNEN 1 OS=Arabidopsis thaliana OX=3702 GN=JUB1 PE=1 SV=1) HSP 1 Score: 164.1 bits (414), Expect = 1.3e-39 Identity = 73/94 (77.66%), Postives = 84/94 (89.36%), Query Frame = 0
BLAST of Carg24721-RA vs. Swiss-Prot
Match: sp|Q9ZVH0|FEZ_ARATH (Protein FEZ OS=Arabidopsis thaliana OX=3702 GN=FEZ PE=2 SV=1) HSP 1 Score: 148.3 bits (373), Expect = 7.1e-35 Identity = 67/104 (64.42%), Postives = 84/104 (80.77%), Query Frame = 0
BLAST of Carg24721-RA vs. Swiss-Prot
Match: sp|Q9FIW5|NAC94_ARATH (Putative NAC domain-containing protein 94 OS=Arabidopsis thaliana OX=3702 GN=ANAC094 PE=3 SV=1) HSP 1 Score: 141.4 bits (355), Expect = 8.7e-33 Identity = 65/104 (62.50%), Postives = 81/104 (77.88%), Query Frame = 0
BLAST of Carg24721-RA vs. Swiss-Prot
Match: sp|Q8H4S4|NAC10_ORYSJ (NAC domain-containing protein 10 OS=Oryza sativa subsp. japonica OX=39947 GN=NAC010 PE=2 SV=1) HSP 1 Score: 119.4 bits (298), Expect = 3.5e-26 Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 0
BLAST of Carg24721-RA vs. Swiss-Prot
Match: sp|A2YMR0|NAC10_ORYSI (NAC transcription factor ONAC010 OS=Oryza sativa subsp. indica OX=39946 GN=ONAC010 PE=3 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 2.3e-25 Identity = 49/87 (56.32%), Postives = 67/87 (77.01%), Query Frame = 0
BLAST of Carg24721-RA vs. TrEMBL
Match: tr|A0A0A0L479|A0A0A0L479_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G608170 PE=4 SV=1) HSP 1 Score: 178.7 bits (452), Expect = 1.0e-41 Identity = 96/142 (67.61%), Postives = 102/142 (71.83%), Query Frame = 0
BLAST of Carg24721-RA vs. TrEMBL
Match: tr|A0A1S3CS33|A0A1S3CS33_CUCME (transcription factor JUNGBRUNNEN 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103504119 PE=4 SV=1) HSP 1 Score: 176.8 bits (447), Expect = 3.8e-41 Identity = 97/142 (68.31%), Postives = 102/142 (71.83%), Query Frame = 0
BLAST of Carg24721-RA vs. TrEMBL
Match: tr|A0A1S3CTC4|A0A1S3CTC4_CUCME (transcription factor JUNGBRUNNEN 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504119 PE=4 SV=1) HSP 1 Score: 176.8 bits (447), Expect = 3.8e-41 Identity = 97/142 (68.31%), Postives = 102/142 (71.83%), Query Frame = 0
BLAST of Carg24721-RA vs. TrEMBL
Match: tr|A0A2P5EVY8|A0A2P5EVY8_9ROSA (NAC domain containing protein OS=Trema orientalis OX=63057 GN=TorNAC43 PE=4 SV=1) HSP 1 Score: 176.4 bits (446), Expect = 4.9e-41 Identity = 83/103 (80.58%), Postives = 93/103 (90.29%), Query Frame = 0
BLAST of Carg24721-RA vs. TrEMBL
Match: tr|A0A2P4HQG6|A0A2P4HQG6_QUESU (Transcription factor jungbrunnen 1 OS=Quercus suber OX=58331 GN=CFP56_08955 PE=4 SV=1) HSP 1 Score: 176.0 bits (445), Expect = 6.5e-41 Identity = 80/94 (85.11%), Postives = 88/94 (93.62%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
|