Carg24275-RA (mRNA) Silver-seed gourd

NameCarg24275-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_352 : 115372 .. 116512 (+)
Sequence length219
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGAGAACTCACGAAGAAGAGCAAGAACAGGGGATCGCGGCAGAGGAGAAGTGGGAGCTTGAACTTTAAGGTTGGATCTTTATAAATTGAAATAAAATCAGATCCTCTGTGCATGGATAATCATTCGAAGTGCGGAATATAAAATGTGAATATTTATTATTACAATTAAGAGTGAAACTGCAATATTTTGTCGACGGTGTTCATTTGCAAGAAAGAAGAAGATGTTTTAATCTTTGATTCATTCTAATTATCCCATCTTAATGGTTCATGCTTTTGATCTTCGATTTAGTAATCATTCCTGAGTTGGATTAATTAAGTTTTGGACTTTTATGATATAAAGATAAGATAAACTAAAAAAGTTGATTTAAACCCAACTCATTTGATGCCACCTTTATTTTTCCTCTAAATTTGTCATTTTATGATGATATGGAATTAGTGAGGCATCATGGGAAATTTGAAATGACTACACATCTAATGCTAATTATTATCATTTTCCCTTCTGCTGGAGAGTGACAAAAACTGCCCCAGTCGAGCCCAATTATCTTGGGGTTCAGAGGCCCAACCAACTCAGTCCAAGGCTCAAAATTTACCAAAGACCCACGGTCATTGCAGCGTTAGTTTGAGGAGAAGTTGGAACTGGAGCTCAAAAGTGTAGAGAAAATTAGAAGTAAATAGACGTAAATTTTATTAATGGCAACTTAATTTCAACGACAAGAGAATCAAAATTGAATGGAGAATCCTTTTGTTTATTGTAAAATTGAATAAATAGAAGGCAAAATTGGTGAAGAAAAGAGGGAAGTATAGAAACAATGATCTGAAGAAATGCAGCAGAAAAGCAGAGGTTGGACTATGTGTGTGGAGAGTATGTGTATGTTGATGAATCATGAATGACACAAATCTGAGAGGTTCAGTTCCGTTTTTCGTTGCCTTTGATCTTGGCAAGATGAGGGAACGCACTCAGAATGTTGTACGGCCTCAAATCCTGCCTCGTCAAAATCCCAATTACTGGCGGAGCCTGCAGAGAATGAAACACACAAATCTGTTTGATTGATTGATGTGTAAAGAAGAAGAAGAAGGAGGAGGAGGAGAAGAAGAACAAAAGCTTACCCCAGCAGCTTCATACTTGGGCACGATGA

mRNA sequence

ATGGATGGAGAACTCACGAAGAAGAGCAAGAACAGGGGATCGCGGCAGAGGAGAAGTGGGAGCTTGAACTTTAAGAAGGCAAAATTGGTGAAGAAAAGAGGGAAGTATAGAAACAATGATCTGAAGAAATGCAGCAGAAAAGCAGAGAAGAAGAAGAAGGAGGAGGAGGAGAAGAAGAACAAAAGCTTACCCCAGCAGCTTCATACTTGGGCACGATGA

Coding sequence (CDS)

ATGGATGGAGAACTCACGAAGAAGAGCAAGAACAGGGGATCGCGGCAGAGGAGAAGTGGGAGCTTGAACTTTAAGAAGGCAAAATTGGTGAAGAAAAGAGGGAAGTATAGAAACAATGATCTGAAGAAATGCAGCAGAAAAGCAGAGAAGAAGAAGAAGGAGGAGGAGGAGAAGAAGAACAAAAGCTTACCCCAGCAGCTTCATACTTGGGCACGATGA

Protein sequence

MDGELTKKSKNRGSRQRRSGSLNFKKAKLVKKRGKYRNNDLKKCSRKAEKKKKEEEEKKNKSLPQQLHTWAR
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg24275Carg24275gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg24275-RACarg24275-RA-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg24275-RA.exon.1Carg24275-RA.exon.1exon
Carg24275-RA.exon.2Carg24275-RA.exon.2exon
Carg24275-RA.exon.3Carg24275-RA.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg24275-RA.CDS.1Carg24275-RA.CDS.1CDS
Carg24275-RA.CDS.2Carg24275-RA.CDS.2CDS
Carg24275-RA.CDS.3Carg24275-RA.CDS.3CDS


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 38..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..40
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..72