Carg24109-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAGACTCAATTCTCAAATTCAAAGAGAAAAAATTCAACGAAACGAGCATCGGGAGAAAAGCAGGAGTTTCGACCTTAGTCTTCCTTCAATGGTAGATAATAGAGAATCCACTTCCGTTCCGATGATCGAATCTGATCCCGACGATGATACTCCGAAGTCCCCTCCAACTTCTCCCAATTCATCCACTCGCAAGGTATTCCACTCCGTTTTTTAGAGGTTTTACTCGTCTTTTATCATCTAGCGAATCTTTTTCTGTTGATTATATCGATTCTGTGTGTTTCTTCTTTATCGAAGCTATTCTAGGTTTCATTCTAGCTGAAATTGTACTTTTAGTTGAAGGATTAATAGAGAAGGAAGAGGAATTAGTCTGTGATTGGCGATGGGTACTTAGGGTGGATTCTCTTCTCCGCGTGATTATATCTTCAGGAGCAATATTTTACTTGTTTAAATACTACAGAAAAGGGAAGCTGTTTACTGATATATGAGTCATATGCTATAGAAAAGTTTGGAAGAAAATGGTGAACTTAAAATCGCTTTTGAAGGTTTTCCTAATCCCTCTTTTCTTGAAAATCTGGTGAAAGTTTCTTCTATGAAGCTTTCAGTGAATTTATTGATCATGCCCCTCTCATTGAAATATCCCTTATGAATTGGTGTTTCTCATAGCCTCGTGTAAGAAACTTGGCAGTGCATTCCTTTACTGATATATTACGTATCTTCAATGTATTCCAAAGGTCAATTGTGACCAGAATTGTGAGATTCCACGTCGGTTGGAGAGGAGAAGGAAGCACTCTTTATAAGGGTGTGGAAATCTCTCCCTAGTAGACATGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGAGCCATTACAAATGGCTTAACGACCTAGCCCAAACCCACTTAGATGAAGCTGCAAGGCGTACAAAGCCAGACACGGGGCGATGTGCCAGCGAGGAAGCTAAGTCCTAAAGGGGGTGGAAACAAGGCAGTATGCCAGCAAGGACGCTAGCCCACATTGATTGGGGGAAACAAGTGCCAGGGTCGATGGACCTGGGGGGGGTTGTTGTGAGATCCCACGTCAGTTGGAGAGGAGAACGAAGTATTCTTTATAAGGGTGTGAAAATCTTCTCCCTAGCAGATGCGTTTTAAAAACCTTGAGGGGAAGCCCGAAAAAAAAAACCCAAAAGAGGACAATATCTGCTAGTGGTGGGCTTAGGCTTAAGCTTAGGCTGTTACAATAATTTTGCGGAATCTTGAAAATTTTCTTTTGAAATGGGGCTGTTGCTTGTTTTAATTTGAGAATATGTGGCTTCAACATCCAAGCCTCTTTCAAACTCTGAAACAATGTGGTGTATTTGAAGTTACAACCCTAGTGACAGAAGTCAGCTTAGGAAAGGTGAAACGCAAAACTGGCCTCTGTTTTTTGGCCATTTCTTGGTGCTAGAGAGTACTGGGAGGGTTATCTCATAATCCACCCAGCATTTCATGTTTTCCAGCTAAATAAACTATTTTATGGATTATGAGTATCCTTAAAAAGAAATTGGTATTTCAACCATGTCAGTTATTGGGTCTTTTTTCAGGCTTGCTATGCTGTTCTCCAGAGTTGGGTCTCAAAGAAGTTCATGACTGGATGGTACTGTTTATCTGCTATTGTTTAGATCAATTTCTACGTCTTCCATTCCAACTATACTAGATTTTGATAAATGATGGAATTGCAGTGTGGTTCTGTTTCCTGTTGCCATTACATTCTTCACCACATGGTGGTTTATCACATTTGTCGATAGCTTCTTTAGCCCGTTATATGCCAGACTTGGAATAAACATATTTGGTATGACTCTTATGATCCAGATTCATTGTTCTTGGTTAAGTTCTGATGCTTTGGAAAATATTTTTATGGACTTCGTACGTTTACTGACTCTCTGTTCCGTTCCATTCCATTCTCATCATTTTATTTTTAATAGAAGATATAGCTTTAGATTTATCCATTATGTGAGATCCCACATCAGTTGGAGAGGAGAACGAAACACCCTTTATAAAGGTGTGGAAAGCGGAAAGCTTTCCCTAGCAGACACGTTTTGAAAACCTTGAGGGGAAGCCCGTAAGGGAAAGCCCAAAGAGGACAATATCTACTGGCGGTGGGCTTGGGCCGTTACAAATGGTATCAGAGCCAGATATCAGGCGATGTGCCAACAAGGAGGCTAGGCCCCGAAGTGGATTGGGGTGTCCCACATCTATTGGAGAAAGGAATGAGTGTCAGCGAGGACGCTGGCCCCAAAGGGGGTGGATTGTGAGATCCCACATCGGTTGGTGAGGAGAACGAAACACTTTTTATAAGGGTGTGGAAACCTTTCCCTAGCAGACGAGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAAAGGACAATATCTGCTAGAAGTGGGTTCGGGCCGTTACACCTTCTTTTCATTTGTAGATCACTAACTTCTTCATTTTCTTACGATTATGACATATGCATATTTCATAAATGATTTTTGTTGCAGGTCTTGGATTTGTTTCGTCGTTGATATTTATACTTTTTGTTGGTTTATTTGCTTCGTCGTGGACGGGTTCCACTGTTTTTTGGCTAGGAGAATGGTTCATAAAAAAGATGCCCTTTGTAAAGCACATTTATTCAGCTTCCAAACAAATTAGTGCAGCCATTTCTCCAGGTACCTCATGTGCTTTCGTTTGTTGATGTATCTTTGAATCTCTTGTTTTCCTATTTTATAGATTGATATTAAGTGCGTTAATCTTGTTTTAAGTTACTGATAAATGGGGGATCTATAGTGTTGTTAGTTCATGTTCAATTAATCTTCATCAATTTTTTTCATCCTAATATTGTTACATATGATGAAATTTCTTCTGATGTATGTATACTCAATAGGATGGTTTATATTAGTTTAAAAGTTTCATCTTTTTACTTTGATGGTGATTTAACTTGATAATATCCTGGGAGGTCCTGAATTCTAATGGAGATCCCGCATCGGTTGGAGAGATGAATGAAGCATTCTTTATAAGGGTATAGAAACCTCTCCCTAGCAGACACGTTTTACAAGTCTTGAGGGGAAGCCCATAAGGGTAAGCCCAAAGAGGACAATATCTGCGAGCGATAGACTTAGGTTGTTTCAAATGGTATCAGAGCCAGACACTGGGCGATGTGCCTACGAGAGGGGAACAAAGCATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAAACGTGTTTTAAAAACTTTGAGGGTAAGCCTGGAAGGGAAAGCCCAAAAAGAAAAAAATATTTGCTAGCAGCGGGCTTGGGTTGTTACATGTAATCTTCCAGATTTATATTTTATGGTAATTTGGTTGAAATTTGGTCAATAGTAAGTAGATGGAATGAGTTTGTCAAGCCATTGTGGTCACCATCCTACGAGTTACCTCGGAAACCAAATATAGTAGGGTTATGTGATTATGGTTACCTATTCGATTGGTTAATTCTTATCGGTATCATTTTCTTTTAGAAGCTACTTCATGTTTGGTGAGATCCCACCTCGATTAGAGAAAGAAACGGGTGCCAACGAGGACGTTGGGCTCCAAGGTGGGTGGATTGTGAGATCCCCACATCGATTGGAGAGAGAAACGAGTGCCAGCGAGGATGCTGGACCTCAAAGAATGGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAGCATTCTTTATAAGGGTCTGGAAATCTCCCTCCTAGCATACGCATTTTAAAAACTTTGAGGGAAAACCCAAAGAAAACAATATCCGCTAGCGGTGGGCTTGAGCTGTTGCATGTTTTCTTGCTATTGCAAGGCCTCGGTACATTAATATCGTTGTCAAAATCTAGTATAAATGTAAATTTTTTGTCTTGGTGATTGCTTTTTTCTAATTGTTTGGGTAAAAATGACAGCATTATGAGGTATAACTAGTTAACGGATCTCGTTCTATCTTTTATTCCTTTTGCACAGACCAAAGTACCACAGCATTCAAGGAAGTAGCCATTATACGGCATCCTAGAATTGGTGAATATGCAATTGGTTTTATTACCTCATCCGTTGTCCTTCAGGTATTTTGTCTGTCCAATCGGTTAATTTCATAATGGTTCTTCCAGTTCATCATAGGTGTTGCAGTCCTGTGATTGTAACTTAGATGTATTGACTTGGTTATGCCTTAAGTAAATTTTGAATGATAACGCAGATGAATGGATATGAAGAGTTATGCAGTGTTTATGTTCCCACGAATCATCTATATATCGGTGACGTTTTTCTTATTAATTCTGAAGATATCATACGACCAAATTTATCGATCCGAGAAGCCATAGGTCAGTGTTTTCTTTTGATAAAATTCAATAAGATGTTCTTTCTCAGGTTGATGGCTTTATTTACATGTGGTTTAGAGCGAATAATTAGGACTTTTTATTTGTTCTTGATTTTAGAACTCATGATTACTTCAACCTCCTCCTCTGGAATTAGAATGGAGGAGGATCTATTGAGATGACGAATTATTTACTTGACCTTATTCCATTGATCTTATTCCATTCACCCAAATTGTAGCGGCGGAATATGTAATAGTTCAAGTTCACTACTAGC AAAGACTCAATTCTCAAATTCAAAGAGAAAAAATTCAACGAAACGAGCATCGGGAGAAAAGCAGGAGTTTCGACCTTAGTCTTCCTTCAATGGTAGATAATAGAGAATCCACTTCCGTTCCGATGATCGAATCTGATCCCGACGATGATACTCCGAAGTCCCCTCCAACTTCTCCCAATTCATCCACTCGCAAGGCTTGCTATGCTGTTCTCCAGAGTTGGGTCTCAAAGAAGTTCATGACTGGATGTGTGGTTCTGTTTCCTGTTGCCATTACATTCTTCACCACATGGTGGTTTATCACATTTGTCGATAGCTTCTTTAGCCCGTTATATGCCAGACTTGGAATAAACATATTTGGTATGACTCTTATGATCCAGATTCATTTTAACGGATCTCGTTCTATCTTTTATTCCTTTTGCACAGACCAAAGTACCACAGCATTCAAGGAAGTAGCCATTATACGGCATCCTAGAATTGGTGAATATGCAATTGGTTTTATTACCTCATCCGTTGTCCTTCAGATGAATGGATATGAAGAGTTATGCAGTGTTTATGTTCCCACGAATCATCTATATATCGGTGACGTTTTTCTTATTAATTCTGAAGATATCATACGACCAAATTTATCGATCCGAGAAGCCATAGGTCAGTGTTTTCTTTTGATAAAATTCAATAAGATGTTCTTTCTCAGGTTGATGGCTTTATTTACATGTGGTTTAGAGCGAATAATTAGGACTTTTTATTTGTTCTTGATTTTAGAACTCATGATTACTTCAACCTCCTCCTCTGGAATTAGAATGGAGGAGGATCTATTGAGATGACGAATTATTTACTTGACCTTATTCCATTGATCTTATTCCATTCACCCAAATTGTAGCGGCGGAATATGTAATAGTTCAAGTTCACTACTAGC ATGGTAGATAATAGAGAATCCACTTCCGTTCCGATGATCGAATCTGATCCCGACGATGATACTCCGAAGTCCCCTCCAACTTCTCCCAATTCATCCACTCGCAAGGCTTGCTATGCTGTTCTCCAGAGTTGGGTCTCAAAGAAGTTCATGACTGGATGTGTGGTTCTGTTTCCTGTTGCCATTACATTCTTCACCACATGGTGGTTTATCACATTTGTCGATAGCTTCTTTAGCCCGTTATATGCCAGACTTGGAATAAACATATTTGGTATGACTCTTATGATCCAGATTCATTTTAACGGATCTCGTTCTATCTTTTATTCCTTTTGCACAGACCAAAGTACCACAGCATTCAAGGAAGTAGCCATTATACGGCATCCTAGAATTGGTGAATATGCAATTGGTTTTATTACCTCATCCGTTGTCCTTCAGATGAATGGATATGAAGAGTTATGCAGTGTTTATGTTCCCACGAATCATCTATATATCGGTGACGTTTTTCTTATTAATTCTGAAGATATCATACGACCAAATTTATCGATCCGAGAAGCCATAGGTCAGTGTTTTCTTTTGATAAAATTCAATAAGATGTTCTTTCTCAGGTTGATGGCTTTATTTACATGTGGTTTAGAGCGAATAATTAGGACTTTTTATTTGTTCTTGATTTTAGAACTCATGATTACTTCAACCTCCTCCTCTGGAATTAGAATGGAGGAGGATCTATTGAGATGA MVDNRESTSVPMIESDPDDDTPKSPPTSPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVAITFFTTWWFITFVDSFFSPLYARLGINIFGMTLMIQIHFNGSRSIFYSFCTDQSTTAFKEVAIIRHPRIGEYAIGFITSSVVLQMNGYEELCSVYVPTNHLYIGDVFLINSEDIIRPNLSIREAIGQCFLLIKFNKMFFLRLMALFTCGLERIIRTFYLFLILELMITSTSSSGIRMEEDLLR
BLAST of Carg24109-RA vs. NCBI nr
Match: XP_022925395.1 (protein LIKE COV 2-like [Cucurbita moschata]) HSP 1 Score: 312.8 bits (800), Expect = 1.0e-81 Identity = 167/219 (76.26%), Postives = 173/219 (79.00%), Query Frame = 0
BLAST of Carg24109-RA vs. NCBI nr
Match: XP_023534892.1 (protein LIKE COV 2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 312.8 bits (800), Expect = 1.0e-81 Identity = 167/219 (76.26%), Postives = 173/219 (79.00%), Query Frame = 0
BLAST of Carg24109-RA vs. NCBI nr
Match: XP_022973505.1 (protein LIKE COV 2-like [Cucurbita maxima]) HSP 1 Score: 310.5 bits (794), Expect = 5.2e-81 Identity = 166/219 (75.80%), Postives = 172/219 (78.54%), Query Frame = 0
BLAST of Carg24109-RA vs. NCBI nr
Match: XP_022151734.1 (protein LIKE COV 2-like [Momordica charantia]) HSP 1 Score: 296.6 bits (758), Expect = 7.8e-77 Identity = 158/219 (72.15%), Postives = 166/219 (75.80%), Query Frame = 0
BLAST of Carg24109-RA vs. NCBI nr
Match: XP_004138368.1 (PREDICTED: protein LIKE COV 2 [Cucumis sativus] >KGN45886.1 hypothetical protein Csa_6G017020 [Cucumis sativus]) HSP 1 Score: 257.3 bits (656), Expect = 5.2e-65 Identity = 144/219 (65.75%), Postives = 153/219 (69.86%), Query Frame = 0
BLAST of Carg24109-RA vs. TAIR10
Match: AT1G43130.1 (like COV 2) HSP 1 Score: 210.7 bits (535), Expect = 1.0e-54 Identity = 113/188 (60.11%), Postives = 128/188 (68.09%), Query Frame = 0
BLAST of Carg24109-RA vs. TAIR10
Match: AT2G20130.1 (like COV 1) HSP 1 Score: 189.9 bits (481), Expect = 1.9e-48 Identity = 99/180 (55.00%), Postives = 116/180 (64.44%), Query Frame = 0
BLAST of Carg24109-RA vs. TAIR10
Match: AT2G18460.1 (like COV 3) HSP 1 Score: 189.1 bits (479), Expect = 3.2e-48 Identity = 108/217 (49.77%), Postives = 137/217 (63.13%), Query Frame = 0
BLAST of Carg24109-RA vs. TAIR10
Match: AT2G20120.1 (Protein of unknown function (DUF502)) HSP 1 Score: 188.0 bits (476), Expect = 7.1e-48 Identity = 98/180 (54.44%), Postives = 116/180 (64.44%), Query Frame = 0
BLAST of Carg24109-RA vs. Swiss-Prot
Match: sp|Q9C8C1|LCV2_ARATH (Protein LIKE COV 2 OS=Arabidopsis thaliana OX=3702 GN=LCV2 PE=2 SV=1) HSP 1 Score: 210.7 bits (535), Expect = 1.8e-53 Identity = 113/188 (60.11%), Postives = 128/188 (68.09%), Query Frame = 0
BLAST of Carg24109-RA vs. Swiss-Prot
Match: sp|Q8VY49|LCV1_ARATH (Protein LIKE COV 1 OS=Arabidopsis thaliana OX=3702 GN=LCV1 PE=2 SV=1) HSP 1 Score: 189.9 bits (481), Expect = 3.3e-47 Identity = 99/180 (55.00%), Postives = 116/180 (64.44%), Query Frame = 0
BLAST of Carg24109-RA vs. Swiss-Prot
Match: sp|F4IQJ6|LCV3_ARATH (Protein LIKE COV 3 OS=Arabidopsis thaliana OX=3702 GN=LCV3 PE=2 SV=1) HSP 1 Score: 189.1 bits (479), Expect = 5.7e-47 Identity = 108/217 (49.77%), Postives = 137/217 (63.13%), Query Frame = 0
BLAST of Carg24109-RA vs. Swiss-Prot
Match: sp|F4IUE7|COV1_ARATH (Protein CONTINUOUS VASCULAR RING 1 OS=Arabidopsis thaliana OX=3702 GN=COV1 PE=1 SV=2) HSP 1 Score: 188.7 bits (478), Expect = 7.5e-47 Identity = 98/180 (54.44%), Postives = 116/180 (64.44%), Query Frame = 0
BLAST of Carg24109-RA vs. TrEMBL
Match: tr|A0A1S4E423|A0A1S4E423_CUCME (LOW QUALITY PROTEIN: protein LIKE COV 2 OS=Cucumis melo OX=3656 GN=LOC103501301 PE=4 SV=1) HSP 1 Score: 257.3 bits (656), Expect = 3.5e-65 Identity = 143/219 (65.30%), Postives = 154/219 (70.32%), Query Frame = 0
BLAST of Carg24109-RA vs. TrEMBL
Match: tr|A0A0A0KDM8|A0A0A0KDM8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G017020 PE=4 SV=1) HSP 1 Score: 257.3 bits (656), Expect = 3.5e-65 Identity = 144/219 (65.75%), Postives = 153/219 (69.86%), Query Frame = 0
BLAST of Carg24109-RA vs. TrEMBL
Match: tr|A0A2P5FEL2|A0A2P5FEL2_9ROSA (Protein LIKE COV OS=Trema orientalis OX=63057 GN=TorRG33x02_078210 PE=4 SV=1) HSP 1 Score: 253.4 bits (646), Expect = 5.0e-64 Identity = 137/220 (62.27%), Postives = 158/220 (71.82%), Query Frame = 0
BLAST of Carg24109-RA vs. TrEMBL
Match: tr|A0A1U7Z5Z1|A0A1U7Z5Z1_NELNU (protein LIKE COV 2-like OS=Nelumbo nucifera OX=4432 GN=LOC104589603 PE=4 SV=1) HSP 1 Score: 253.4 bits (646), Expect = 5.0e-64 Identity = 138/223 (61.88%), Postives = 160/223 (71.75%), Query Frame = 0
BLAST of Carg24109-RA vs. TrEMBL
Match: tr|W9S3C4|W9S3C4_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_004475 PE=4 SV=1) HSP 1 Score: 251.5 bits (641), Expect = 1.9e-63 Identity = 134/187 (71.66%), Postives = 147/187 (78.61%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
|