Carg23979-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23979-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Zinc finger CCCH domain protein
Location	Cucurbita_argyrosperma_scaffold_253 : 255273 .. 256121 (-)
Sequence length	849

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTATCGTGAAACGATATGCCCCACCGTCGCCGCACGTGTCGCCGCTCGATTCGCCCACGAGAGCGGTCATGGAGTTCGATTCGTCATTCTGGGAGGAACAGGATCTGCCGGCGGCGGTGGACGCGTTCACCTGCGACGATTTTCGTATGTACGAGTTCAAAGTTCGCTCGTGCGCACGTGGGAGGTCCCACGATTGGACTAAATGTCCGTACGCTCACGTCGGCGAGAAGGCTCGCCGCCGTGATCCGAGGAAGTTCAGCTATTCTGGCACTGAATGCCCTGCTTTACGCCATGGGTGTTGTAAGAAAGGGGACGCCTGTGAGTTCGCTCATGGTACATTCGAAAGTTGGCTCCACCCAGACCGGTACCGGACTCAGCCGTGCCGTGACGGAATCGCCTGCCGGCGGCGAGTCTGTTTCTTCGCCCATACGTTGGAGCAACTCCGGATTCCGGCGAAACAGAGCCTCATGTCTCCACGGGCGGCTAAGGAAATCGCCGCTGCTGTAACATCGCCGACGTCGATCCTAATCTCGCCGGATTCGCCTCCAATGTCTCCGATCAGCCCTGTAACCACCGGCGGCGAATCGTTCAGCAGATTAGTCCCACTGATGCACAATCTCCAGCTTGACAAATCAAAGAAAAATCCAGCCGTCTCCGGCTTCGATTCAAGCCCCCGGCGGAACTCCGGCGGGTTCGATCTGTGGGACAGAACTTTCGAAGAAGAACCGGCAATGGAGAGAGTGGAATCTGGAAGAAACCTCCGTGCCCAAATGTACGCCAAATTAATGAGAGAGAATTCGGTGGACAGAATCCGGCCACTGATATCGGCCGGATCTCAAAGCTAA

mRNA sequence

ATGTCTATCGTGAAACGATATGCCCCACCGTCGCCGCACGTGTCGCCGCTCGATTCGCCCACGAGAGCGGTCATGGAGTTCGATTCGTCATTCTGGGAGGAACAGGATCTGCCGGCGGCGGTGGACGCGTTCACCTGCGACGATTTTCGTATGTACGAGTTCAAAGTTCGCTCGTGCGCACGTGGGAGGTCCCACGATTGGACTAAATGTCCGTACGCTCACGTCGGCGAGAAGGCTCGCCGCCGTGATCCGAGGAAGTTCAGCTATTCTGGCACTGAATGCCCTGCTTTACGCCATGGGTGTTGTAAGAAAGGGGACGCCTGTGAGTTCGCTCATGGTACATTCGAAAGTTGGCTCCACCCAGACCGGTACCGGACTCAGCCGTGCCGTGACGGAATCGCCTGCCGGCGGCGAGTCTGTTTCTTCGCCCATACGTTGGAGCAACTCCGGATTCCGGCGAAACAGAGCCTCATGTCTCCACGGGCGGCTAAGGAAATCGCCGCTGCTGTAACATCGCCGACGTCGATCCTAATCTCGCCGGATTCGCCTCCAATGTCTCCGATCAGCCCTGTAACCACCGGCGGCGAATCGTTCAGCAGATTAGTCCCACTGATGCACAATCTCCAGCTTGACAAATCAAAGAAAAATCCAGCCGTCTCCGGCTTCGATTCAAGCCCCCGGCGGAACTCCGGCGGGTTCGATCTGTGGGACAGAACTTTCGAAGAAGAACCGGCAATGGAGAGAGTGGAATCTGGAAGAAACCTCCGTGCCCAAATGTACGCCAAATTAATGAGAGAGAATTCGGTGGACAGAATCCGGCCACTGATATCGGCCGGATCTCAAAGCTAA

Coding sequence (CDS)

ATGTCTATCGTGAAACGATATGCCCCACCGTCGCCGCACGTGTCGCCGCTCGATTCGCCCACGAGAGCGGTCATGGAGTTCGATTCGTCATTCTGGGAGGAACAGGATCTGCCGGCGGCGGTGGACGCGTTCACCTGCGACGATTTTCGTATGTACGAGTTCAAAGTTCGCTCGTGCGCACGTGGGAGGTCCCACGATTGGACTAAATGTCCGTACGCTCACGTCGGCGAGAAGGCTCGCCGCCGTGATCCGAGGAAGTTCAGCTATTCTGGCACTGAATGCCCTGCTTTACGCCATGGGTGTTGTAAGAAAGGGGACGCCTGTGAGTTCGCTCATGGTACATTCGAAAGTTGGCTCCACCCAGACCGGTACCGGACTCAGCCGTGCCGTGACGGAATCGCCTGCCGGCGGCGAGTCTGTTTCTTCGCCCATACGTTGGAGCAACTCCGGATTCCGGCGAAACAGAGCCTCATGTCTCCACGGGCGGCTAAGGAAATCGCCGCTGCTGTAACATCGCCGACGTCGATCCTAATCTCGCCGGATTCGCCTCCAATGTCTCCGATCAGCCCTGTAACCACCGGCGGCGAATCGTTCAGCAGATTAGTCCCACTGATGCACAATCTCCAGCTTGACAAATCAAAGAAAAATCCAGCCGTCTCCGGCTTCGATTCAAGCCCCCGGCGGAACTCCGGCGGGTTCGATCTGTGGGACAGAACTTTCGAAGAAGAACCGGCAATGGAGAGAGTGGAATCTGGAAGAAACCTCCGTGCCCAAATGTACGCCAAATTAATGAGAGAGAATTCGGTGGACAGAATCCGGCCACTGATATCGGCCGGATCTCAAAGCTAA

Protein sequence

MSIVKRYAPPSPHVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPLISAGSQS

Homology

[Close]

BLAST of Carg23979-RA vs. NCBI nr
Match: XP_022951066.1 (zinc finger CCCH domain-containing protein 20-like [Cucurbita moschata])

HSP 1 Score: 534.3 bits (1375), Expect = 2.6e-148
Identity = 265/270 (98.15%), Postives = 268/270 (99.26%), Query Frame = 0


Query: 13  HVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPY 72
           HVSPLDSPTRAVMEFDSSFWEEQ+LPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPY
Sbjct: 36  HVSPLDSPTRAVMEFDSSFWEEQELPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPY 95

Query: 73  AHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCRDG 132
           AHVGEKARRRDPRKF+YSGTECPALRHGCCKKGDACEFAHGTFE WLHPDRYRTQPCRDG
Sbjct: 96  AHVGEKARRRDPRKFNYSGTECPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDG 155

Query: 133 IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSXXXXXXXXVT 192
           IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIA+AVTSPTSILISPD XXXXXXXXVT
Sbjct: 156 IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIASAVTSPTSILISPDXXXXXXXXXVT 215

Query: 193 TGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESG 252
           TGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESG
Sbjct: 216 TGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESG 275

Query: 253 RNLRAQMYAKLMRENSVDRIRPLISAGSQS 283
           RNLRAQMYAKLMRENSVDRIRPLISAGSQS
Sbjct: 276 RNLRAQMYAKLMRENSVDRIRPLISAGSQS 305

[Close]

BLAST of Carg23979-RA vs. NCBI nr
Match: XP_023537964.1 (zinc finger CCCH domain-containing protein 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 529.6 bits (1363), Expect = 6.3e-147
Identity = 263/270 (97.41%), Postives = 265/270 (98.15%), Query Frame = 0


Query: 13  HVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPY 72
           HVSPLDSPTRAVMEFDSSFWEEQD+PAAVDAFTCDDFRMYEFKVRSC RGRSHDWTKCP 
Sbjct: 40  HVSPLDSPTRAVMEFDSSFWEEQDMPAAVDAFTCDDFRMYEFKVRSCTRGRSHDWTKCPN 99

Query: 73  AHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCRDG 132
           AH GEKARRRDPRKF+YSGTECPALRHGCC KGDACEFAHGTFE WLHPDRYRTQPCRDG
Sbjct: 100 AHAGEKARRRDPRKFNYSGTECPALRHGCCNKGDACEFAHGTFEIWLHPDRYRTQPCRDG 159

Query: 133 IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSXXXXXXXXVT 192
           IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSXXXXXXXXVT
Sbjct: 160 IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSXXXXXXXXVT 219

Query: 193 TGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESG 252
           TGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESG
Sbjct: 220 TGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESG 279

Query: 253 RNLRAQMYAKLMRENSVDRIRPLISAGSQS 283
           RNLRAQMYAKLMRENSVDRIRPLISAGSQS
Sbjct: 280 RNLRAQMYAKLMRENSVDRIRPLISAGSQS 309

[Close]

BLAST of Carg23979-RA vs. NCBI nr
Match: XP_023002826.1 (zinc finger CCCH domain-containing protein 20-like [Cucurbita maxima])

HSP 1 Score: 526.9 bits (1356), Expect = 4.1e-146
Identity = 259/272 (95.22%), Postives = 260/272 (95.59%), Query Frame = 0


Query: 11  SPHVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKC 70
           S HVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKC
Sbjct: 37  SGHVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKC 96

Query: 71  PYAHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCR 130
           PYAH GEKARRRDPRKF+YSGTECPALRHGCCKKGDACEFAHGTFE WLHPDRYRTQPCR
Sbjct: 97  PYAHAGEKARRRDPRKFNYSGTECPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCR 156

Query: 131 DGIACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSXXXXXXXX 190
           DGIACRRRVCFFAHTLEQLRIPAKQSLMSPRA KEI AAVTSPTSILISPDS    XXX 
Sbjct: 157 DGIACRRRVCFFAHTLEQLRIPAKQSLMSPRAGKEIDAAVTSPTSILISPDSPPMSXXXP 216

Query: 191 VTTGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVE 250
           VTTGGESFSRLVPLMHNLQLDKSKK PAVSGF SSPRRNSGGFDLWDRTFEEEPAMERVE
Sbjct: 217 VTTGGESFSRLVPLMHNLQLDKSKKIPAVSGFVSSPRRNSGGFDLWDRTFEEEPAMERVE 276

Query: 251 SGRNLRAQMYAKLMRENSVDRIRPLISAGSQS 283
           SGRNLRAQMYAKLMRENSVDRIRPLISAGSQS
Sbjct: 277 SGRNLRAQMYAKLMRENSVDRIRPLISAGSQS 308

[Close]

BLAST of Carg23979-RA vs. NCBI nr
Match: XP_008444505.1 (PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 20 [Cucumis melo])

HSP 1 Score: 442.2 bits (1136), Expect = 1.3e-120
Identity = 212/272 (77.94%), Postives = 229/272 (84.19%), Query Frame = 0


Query: 13  HVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPY 72
           HVSPLDSPT A+M+FDSS WE+ DLPA VD F+CD FRMYEFKVRSCARGRSHDWTKCPY
Sbjct: 35  HVSPLDSPTAALMDFDSSLWEDPDLPAPVDGFSCDQFRMYEFKVRSCARGRSHDWTKCPY 94

Query: 73  AHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCRDG 132
           AH GEKARRRDPRKF+YSG ECP LRHGCCKKGDACE+AHGTFE WLHPDRYRTQPCRDG
Sbjct: 95  AHTGEKARRRDPRKFNYSGAECPDLRHGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDG 154

Query: 133 IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISP--DSXXXXXXXX 192
             CRRRVCFFAHT EQLRIP KQS+ SPRA +    AV+SPTSIL+SP  DS        
Sbjct: 155 TGCRRRVCFFAHTSEQLRIPGKQSVRSPRAREIAVPAVSSPTSILLSPSSDSPPLSPISP 214

Query: 193 VTTGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVE 252
           V +GGES SRLV LMH+L+LD+ K NP VS F  + RRNSG FDLWDR  EEEPAMERVE
Sbjct: 215 VISGGESSSRLVALMHSLRLDEXKTNPGVSSFSPNLRRNSGAFDLWDRENEEEPAMERVE 274

Query: 253 SGRNLRAQMYAKLMRENSVDRIRPLISAGSQS 283
           SGRNLRAQMYAKLMRENSVDR+RPLISAGSQ+
Sbjct: 275 SGRNLRAQMYAKLMRENSVDRVRPLISAGSQN 306

[Close]

BLAST of Carg23979-RA vs. NCBI nr
Match: XP_023545606.1 (zinc finger CCCH domain-containing protein 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 437.2 bits (1123), Expect = 4.3e-119
Identity = 209/272 (76.84%), Postives = 229/272 (84.19%), Query Frame = 0


Query: 13  HVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPY 72
           +VSPLDSPT AVM++DSS WE+QDLPA VDAFTCD FRMYEFKVR+CARGRSHDWTKCPY
Sbjct: 35  NVSPLDSPTAAVMDYDSSLWEDQDLPAIVDAFTCDHFRMYEFKVRACARGRSHDWTKCPY 94

Query: 73  AHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCRDG 132
           AH GEKARRRDPRKF+YSGTECP LRHGCC KGDACE+AHG FE WLHPDRYRTQPCRDG
Sbjct: 95  AHAGEKARRRDPRKFNYSGTECPDLRHGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDG 154

Query: 133 IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILI--SPDSXXXXXXXX 192
             CRRRVCFFAH+ EQLRIP KQS+ SPR  +  A+AV+SPTSILI  S DS        
Sbjct: 155 AGCRRRVCFFAHSSEQLRIPGKQSIRSPRGREITASAVSSPTSILISSSSDSPPMSPISP 214

Query: 193 VTTGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVE 252
           +TTGGESFSRLV LMHNL  D+ K NP +SGF  + RRNSG FD WDR  EEEPAMERVE
Sbjct: 215 LTTGGESFSRLVALMHNLHFDELKTNPGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVE 274

Query: 253 SGRNLRAQMYAKLMRENSVDRIRPLISAGSQS 283
           SGRNLRAQMYAKLMRENSV+R+RPLI AGS++
Sbjct: 275 SGRNLRAQMYAKLMRENSVERVRPLILAGSRN 306

[Close]

BLAST of Carg23979-RA vs. TAIR10
Match: AT2G19810.1 (CCCH-type zinc finger family protein)

HSP 1 Score: 258.1 bits (658), Expect = 6.4e-69
Identity = 136/269 (50.56%), Postives = 167/269 (62.08%), Query Frame = 0


Query: 41  VDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTECPALRHG 100
           +DA+TCD FRMYEFKVR CARGRSHDWT+CPYAH GEKARRRDPRKF YSGT CP  R G
Sbjct: 71  IDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKG 130

Query: 101 CCKKGDACEFAHGTFESWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQS---- 160
           CCK+GDACEF+HG FE WLHP RYRTQPC+DG  CRRRVCFFAH+ +Q+R+   QS    
Sbjct: 131 CCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIRVLPNQSPDRV 190

Query: 161 ----LMSPRAAKEIAAAVT-SPTSILISP--DSXXXXXXXXVTTGGESFSRLVPLMHNLQ 220
               ++SP   +    +++ S  S  +SP  DS         + G    + +V  + NLQ
Sbjct: 191 DSFDVLSPTIRRAFQFSISPSSNSPPVSPRGDSDSSCSLLSRSLGSNLGNDVVASLRNLQ 250

Query: 221 LDKSKKNPAVS----------------------GFDSSPR--RNSGGFDLWDRTFEEEPA 275
           L+K K + + S                      GF S P      G  ++W+   EEEPA
Sbjct: 251 LNKVKSSLSSSYNNQIGGYGXXXXXXRGSVLGPGFRSLPTTPTRPGFMNIWENGLEEEPA 310

[Close]

BLAST of Carg23979-RA vs. TAIR10
Match: AT2G25900.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 238.0 bits (606), Expect = 6.9e-63
Identity = 133/275 (48.36%), Postives = 166/275 (60.36%), Query Frame = 0


Query: 10  PSPHVSPLDSPTRAV----MEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSH 69
           PSP++    S  R +    +  DS      +     D+F+ D+FR+YEFK+R CARGRSH
Sbjct: 48  PSPYLDSFASLFRYLPSNELTNDSDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSH 107

Query: 70  DWTKCPYAHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYR 129
           DWT+CP+AH GEKARRRDPRKF YSGT CP  R G C++GD+CEF+HG FE WLHP RYR
Sbjct: 108 DWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYR 167

Query: 130 TQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSXXX 189
           TQPC+DG +CRRR+CFFAHT EQLR+      + P      +   TSPTSIL+SP     
Sbjct: 168 TQPCKDGTSCRRRICFFAHTTEQLRV--LPCSLDPDLG-FFSGLATSPTSILVSPSFSPP 227

Query: 190 XXXXXVTTGGESFSRLVPLMHNLQLDK---SKKNPAVSG----FDSSPRRNSGGFDLWDR 249
                ++    S   L+  M  +QL+    S  +P  S     F SS R        W R
Sbjct: 228 SESPPLS---PSTGELIASMRKMQLNGGGCSWSSPMRSAVRLPFSSSLRPIQAA--TWPR 287

Query: 250 ----TFEEEPAMERVESGRNLRAQMYAKLMRENSV 270
                 EE PAME VESG+ LRA+MYA+L RENS+
Sbjct: 288 IREFEIEEAPAMEFVESGKELRAEMYARLSRENSL 314

[Close]

BLAST of Carg23979-RA vs. TAIR10
Match: AT4G29190.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 229.9 bits (585), Expect = 1.9e-60
Identity = 123/263 (46.77%), Postives = 148/263 (56.27%), Query Frame = 0


Query: 41  VDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTECPALRHG 100
           +DA++CD FRMY+FKVR CARGRSHDWT+CPYAH GEKARRRDPRK+ YSGT CP  R G
Sbjct: 72  IDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKG 131

Query: 101 CCKKGDACEFAHGTFESWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLMSP 160
            CKKGD+CEFAHG FE WLHP RYRTQPC+DG  C R++CFFAH+ +QLR    +     
Sbjct: 132 GCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLRFLHTRXXXXX 191

Query: 161 RAAKEIAAAVTSPTSILISP-------------DSXXXXXXXXVTTGGESFSRLVPLMHN 220
                            ISP             +S         + G  S + +VP   N
Sbjct: 192 XXXXXXXXXXXXXXXXXISPVSGSPPMSPRADSESSPMTQSLSRSLGSCSINDVVPSFRN 251

Query: 221 LQLDKSKKNPAVS---------------GFDSSPR--RNSGGFDLWDRTFEEEPAMER-V 273
           LQ +  K  P  +               GF S P      G  D+W+   EEEP MER V
Sbjct: 252 LQFNSVKSFPRNNPLFGFGSPRGSILGPGFQSLPTTPTRPGNLDIWEYGLEEEPVMERVV 311

[Close]

BLAST of Carg23979-RA vs. TAIR10
Match: AT1G03790.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 173.3 bits (438), Expect = 2.1e-43
Identity = 80/145 (55.17%), Postives = 98/145 (67.59%), Query Frame = 0


Query: 42  DAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTECPALRH-G 101
           D +  D FRM+EFK+R C R RSHDWT CP+AH GEKARRRDPR+F YSG  CP  R  G
Sbjct: 76  DPYASDHFRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFQYSGEVCPEFRRGG 135

Query: 102 CCKKGDACEFAHGTFESWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLMSP 161
            C +GD CEFAHG FE WLHP RYRT+ C+DG  C+R+VCFFAH+  QLR+   +++   
Sbjct: 136 DCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHSPRQLRVLPPENVSGV 195

Query: 162 RAAKEIAA-------AVTSPTSILI 179
            A+   AA         +SPTS L+
Sbjct: 196 SASPSPAAKNPCCLFCSSSPTSTLL 220

[Close]

BLAST of Carg23979-RA vs. TAIR10
Match: AT2G41900.1 (CCCH-type zinc finger protein with ARM repeat domain)

HSP 1 Score: 173.3 bits (438), Expect = 2.1e-43
Identity = 81/161 (50.31%), Postives = 106/161 (65.84%), Query Frame = 0


Query: 26  EFDSSFWEEQDLPAAVDA-FTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDP 85
           EF   +  +  LP   ++ +  D+FRMY FKVR C+R  SHDWT+CP+ H GE ARRRDP
Sbjct: 238 EFKKEYPVDPSLPDIKNSIYATDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDP 297

Query: 86  RKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCRDGIACRRRVCFFAH 145
           RKF YS   CP  R G C++GD CE+AHG FE WLHP +YRT+ C+DG  C RRVCFFAH
Sbjct: 298 RKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTGCARRVCFFAH 357

Query: 146 TLEQLR---IPAKQSLMSPRAAKEIAAAVT----SPTSILI 179
           T E+LR        ++ SPR+  + AAA++    SP+ + +
Sbjct: 358 TPEELRPLYASTGSAVPSPRSNADYAAALSLLPGSPSGVSV 398

[Close]

BLAST of Carg23979-RA vs. Swiss-Prot
Match: sp|O82199|C3H20_ARATH (Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=At2g19810 PE=2 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 1.2e-67
Identity = 136/269 (50.56%), Postives = 167/269 (62.08%), Query Frame = 0


Query: 41  VDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTECPALRHG 100
           +DA+TCD FRMYEFKVR CARGRSHDWT+CPYAH GEKARRRDPRKF YSGT CP  R G
Sbjct: 71  IDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKG 130

Query: 101 CCKKGDACEFAHGTFESWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQS---- 160
           CCK+GDACEF+HG FE WLHP RYRTQPC+DG  CRRRVCFFAH+ +Q+R+   QS    
Sbjct: 131 CCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIRVLPNQSPDRV 190

Query: 161 ----LMSPRAAKEIAAAVT-SPTSILISP--DSXXXXXXXXVTTGGESFSRLVPLMHNLQ 220
               ++SP   +    +++ S  S  +SP  DS         + G    + +V  + NLQ
Sbjct: 191 DSFDVLSPTIRRAFQFSISPSSNSPPVSPRGDSDSSCSLLSRSLGSNLGNDVVASLRNLQ 250

Query: 221 LDKSKKNPAVS----------------------GFDSSPR--RNSGGFDLWDRTFEEEPA 275
           L+K K + + S                      GF S P      G  ++W+   EEEPA
Sbjct: 251 LNKVKSSLSSSYNNQIGGYGXXXXXXRGSVLGPGFRSLPTTPTRPGFMNIWENGLEEEPA 310

[Close]

BLAST of Carg23979-RA vs. Swiss-Prot
Match: sp|O82307|C3H23_ARATH (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.2e-61
Identity = 133/275 (48.36%), Postives = 166/275 (60.36%), Query Frame = 0


Query: 10  PSPHVSPLDSPTRAV----MEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSH 69
           PSP++    S  R +    +  DS      +     D+F+ D+FR+YEFK+R CARGRSH
Sbjct: 48  PSPYLDSFASLFRYLPSNELTNDSDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSH 107

Query: 70  DWTKCPYAHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYR 129
           DWT+CP+AH GEKARRRDPRKF YSGT CP  R G C++GD+CEF+HG FE WLHP RYR
Sbjct: 108 DWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYR 167

Query: 130 TQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSXXX 189
           TQPC+DG +CRRR+CFFAHT EQLR+      + P      +   TSPTSIL+SP     
Sbjct: 168 TQPCKDGTSCRRRICFFAHTTEQLRV--LPCSLDPDLG-FFSGLATSPTSILVSPSFSPP 227

Query: 190 XXXXXVTTGGESFSRLVPLMHNLQLDK---SKKNPAVSG----FDSSPRRNSGGFDLWDR 249
                ++    S   L+  M  +QL+    S  +P  S     F SS R        W R
Sbjct: 228 SESPPLS---PSTGELIASMRKMQLNGGGCSWSSPMRSAVRLPFSSSLRPIQAA--TWPR 287

Query: 250 ----TFEEEPAMERVESGRNLRAQMYAKLMRENSV 270
                 EE PAME VESG+ LRA+MYA+L RENS+
Sbjct: 288 IREFEIEEAPAMEFVESGKELRAEMYARLSRENSL 314

[Close]

BLAST of Carg23979-RA vs. Swiss-Prot
Match: sp|Q9M0G2|C3H49_ARATH (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN=At4g29190 PE=2 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 3.4e-59
Identity = 123/263 (46.77%), Postives = 148/263 (56.27%), Query Frame = 0


Query: 41  VDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTECPALRHG 100
           +DA++CD FRMY+FKVR CARGRSHDWT+CPYAH GEKARRRDPRK+ YSGT CP  R G
Sbjct: 72  IDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKG 131

Query: 101 CCKKGDACEFAHGTFESWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLMSP 160
            CKKGD+CEFAHG FE WLHP RYRTQPC+DG  C R++CFFAH+ +QLR    +     
Sbjct: 132 GCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLRFLHTRXXXXX 191

Query: 161 RAAKEIAAAVTSPTSILISP-------------DSXXXXXXXXVTTGGESFSRLVPLMHN 220
                            ISP             +S         + G  S + +VP   N
Sbjct: 192 XXXXXXXXXXXXXXXXXISPVSGSPPMSPRADSESSPMTQSLSRSLGSCSINDVVPSFRN 251

Query: 221 LQLDKSKKNPAVS---------------GFDSSPR--RNSGGFDLWDRTFEEEPAMER-V 273
           LQ +  K  P  +               GF S P      G  D+W+   EEEP MER V
Sbjct: 252 LQFNSVKSFPRNNPLFGFGSPRGSILGPGFQSLPTTPTRPGNLDIWEYGLEEEPVMERVV 311

[Close]

BLAST of Carg23979-RA vs. Swiss-Prot
Match: sp|Q9FU27|C3H2_ORYSJ (Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0192000 PE=2 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 3.9e-55
Identity = 96/127 (75.59%), Postives = 109/127 (85.83%), Query Frame = 0


Query: 37  LPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTECPA 96
           + AAVDA+ CD+FRMYEFKVR CARGRSHDWT+CP+AH GEKARRRDPRK+ YSGT CP 
Sbjct: 65  MAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPD 124

Query: 97  LRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRI-PAKQ 156
            R G CK+GDACE+AHG FE WLHP RYRTQPC+DG ACRRRVCFFAHT +QLR+ PA+Q
Sbjct: 125 FRKGGCKRGDACEYAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPAQQ 184

Query: 157 SLMSPRA 163
           S  SPR+
Sbjct: 185 S--SPRS 189

[Close]

BLAST of Carg23979-RA vs. Swiss-Prot
Match: sp|Q6L4N4|C3H35_ORYSJ (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 4.0e-52
Identity = 90/123 (73.17%), Postives = 101/123 (82.11%), Query Frame = 0


Query: 42  DAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSYSGTECPALRHGC 101
           DA+ CD+FRMYEFKVR CARGRSHDWT+CP+AH GEKARRRDPR++ YSGT CP  R G 
Sbjct: 71  DAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFRKGG 130

Query: 102 CKKGDACEFAHGTFESWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRI---PAKQSLM 161
           CK+GDACEFAHG FE WLHP RYRTQPC+DG ACRRRVCFFAHT +QLR+     +Q   
Sbjct: 131 CKRGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPPSQQQGSN 190

[Close]

BLAST of Carg23979-RA vs. TrEMBL
Match: tr|A0A1S3BBA7|A0A1S3BBA7_CUCME (LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 20 OS=Cucumis melo OX=3656 GN=LOC103487803 PE=4 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 8.8e-121
Identity = 212/272 (77.94%), Postives = 229/272 (84.19%), Query Frame = 0


Query: 13  HVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPY 72
           HVSPLDSPT A+M+FDSS WE+ DLPA VD F+CD FRMYEFKVRSCARGRSHDWTKCPY
Sbjct: 35  HVSPLDSPTAALMDFDSSLWEDPDLPAPVDGFSCDQFRMYEFKVRSCARGRSHDWTKCPY 94

Query: 73  AHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCRDG 132
           AH GEKARRRDPRKF+YSG ECP LRHGCCKKGDACE+AHGTFE WLHPDRYRTQPCRDG
Sbjct: 95  AHTGEKARRRDPRKFNYSGAECPDLRHGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDG 154

Query: 133 IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISP--DSXXXXXXXX 192
             CRRRVCFFAHT EQLRIP KQS+ SPRA +    AV+SPTSIL+SP  DS        
Sbjct: 155 TGCRRRVCFFAHTSEQLRIPGKQSVRSPRAREIAVPAVSSPTSILLSPSSDSPPLSPISP 214

Query: 193 VTTGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVE 252
           V +GGES SRLV LMH+L+LD+ K NP VS F  + RRNSG FDLWDR  EEEPAMERVE
Sbjct: 215 VISGGESSSRLVALMHSLRLDEXKTNPGVSSFSPNLRRNSGAFDLWDRENEEEPAMERVE 274

Query: 253 SGRNLRAQMYAKLMRENSVDRIRPLISAGSQS 283
           SGRNLRAQMYAKLMRENSVDR+RPLISAGSQ+
Sbjct: 275 SGRNLRAQMYAKLMRENSVDRVRPLISAGSQN 306

[Close]

BLAST of Carg23979-RA vs. TrEMBL
Match: tr|A0A0A0LNN8|A0A0A0LNN8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G352420 PE=4 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 8.2e-119
Identity = 210/271 (77.49%), Postives = 229/271 (84.50%), Query Frame = 0


Query: 13  HVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPY 72
           HVSPLDSPT A+M+FDSS WE+ DLPA VDA++CD FRMYEFKVRSCARGRSHDWTKCPY
Sbjct: 35  HVSPLDSPTAALMDFDSSLWEDPDLPAPVDAYSCDQFRMYEFKVRSCARGRSHDWTKCPY 94

Query: 73  AHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCRDG 132
           AH GEKARRRDPRKF+YSG ECP LRHGCCKKGDACE+AHGTFE WLHPDRYRTQPCRDG
Sbjct: 95  AHTGEKARRRDPRKFNYSGAECPDLRHGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDG 154

Query: 133 IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISP--DSXXXXXXXX 192
             CRRRVCFFAHT EQLRIP KQS+ SPRA +    AV+SPTSIL+SP  DS        
Sbjct: 155 TGCRRRVCFFAHTSEQLRIPGKQSVRSPRAREMAIPAVSSPTSILLSPSSDSPPLSPISP 214

Query: 193 VTTGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSG-GFDLWDRTFEEEPAMERV 252
           V +GGESFSRLV LMH+L+LD+ K NP VS F  + RR+SG  FDLWDR  EEEPAMERV
Sbjct: 215 VISGGESFSRLVALMHSLRLDELKTNPGVSSFSPNLRRSSGAAFDLWDRENEEEPAMERV 274

Query: 253 ESGRNLRAQMYAKLMRENSVDRIRPLISAGS 281
           ESGRNLRAQMYAKLMRENSVDR+RP+ISAGS
Sbjct: 275 ESGRNLRAQMYAKLMRENSVDRVRPMISAGS 305

[Close]

BLAST of Carg23979-RA vs. TrEMBL
Match: tr|Q5NDD3|Q5NDD3_CUCSA (Putative CCCH-type zinc finger protein CsSEF1 OS=Cucumis sativus OX=3659 GN=se2c5 PE=2 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 5.3e-118
Identity = 209/271 (77.12%), Postives = 228/271 (84.13%), Query Frame = 0


Query: 13  HVSPLDSPTRAVMEFDSSFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPY 72
           HVSPLDSPT A+M+FDSS WE+ DLPA VDA++CD FRMYEFKVRSCARGRSHDWTKCPY
Sbjct: 35  HVSPLDSPTAALMDFDSSLWEDPDLPAPVDAYSCDQFRMYEFKVRSCARGRSHDWTKCPY 94

Query: 73  AHVGEKARRRDPRKFSYSGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCRDG 132
           AH GEKARRRDPRKF+YSG ECP LRHGCCKKGDACE+AHGTFE WLHPDRYRTQPCRDG
Sbjct: 95  AHTGEKARRRDPRKFNYSGAECPDLRHGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDG 154

Query: 133 IACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISP--DSXXXXXXXX 192
             CRRRVCFFAHT EQLRIP KQS+ SPRA +    AV+SPTSIL+SP  DS        
Sbjct: 155 TGCRRRVCFFAHTSEQLRIPGKQSVRSPRAREMAIPAVSSPTSILLSPSSDSPPLSPISP 214

Query: 193 VTTGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSG-GFDLWDRTFEEEPAMERV 252
           V +GGES SRLV LMH+L+LD+ K NP VS F  + RR+SG  FDLWDR  EEEPAMERV
Sbjct: 215 VISGGESLSRLVALMHSLRLDELKTNPGVSSFSPNLRRSSGAAFDLWDRGNEEEPAMERV 274

Query: 253 ESGRNLRAQMYAKLMRENSVDRIRPLISAGS 281
           ESGRNLRAQMYAKLMRENSVDR+RP+ISAGS
Sbjct: 275 ESGRNLRAQMYAKLMRENSVDRVRPMISAGS 305

[Close]

BLAST of Carg23979-RA vs. TrEMBL
Match: tr|A0A0D2TJL3|A0A0D2TJL3_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G047600 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 5.2e-73
Identity = 162/289 (56.06%), Postives = 184/289 (63.67%), Query Frame = 0


Query: 30  SFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSY 89
           SF ++ DLP  VDAF+CD FRMYEFKVR CARGRSHDWT+CPYAH GEKARRRDPRKF Y
Sbjct: 64  SFSDDSDLP--VDAFSCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHY 123

Query: 90  SGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQL 149
           SGT CP  R G CKKGD+CEFAHG FE WLHP RYRTQPC+DG +C+RRVCFFAHT EQL
Sbjct: 124 SGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTSCQRRVCFFAHTPEQL 183

Query: 150 RIPAKQSLMSPRAAKEIAA--------------AVTSPTSILISPDSXXXXXXXXVTTGG 209
           R+  +Q   SPR     +A               V+SPTSIL SP      XXXX    G
Sbjct: 184 RVLPQQ---SPRGNGSASADLDYVGSPMRHRLEFVSSPTSILASPPISPPSXXXXXXXSG 243

Query: 210 --ESFSRLVPLMHNLQLDKSKKNPAVS-------------------GFDSSP-------- 269
              S S L   M +LQL KSK N A S                   GF SSP        
Sbjct: 244 SFNSVSELAASMRSLQLGKSKMNGACSWGLQMGSGFSSPRGSTLRPGFCSSPSTPTRTPT 303

Query: 270 RRNSGGFDLWD-RTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRP 275
           R + G FD+W+    +EEPAMERVESGR+LRA+MYAKL +ENS+ R+ P
Sbjct: 304 RSSLGQFDIWEFNAVQEEPAMERVESGRDLRARMYAKLSKENSIGRLEP 347

[Close]

BLAST of Carg23979-RA vs. TrEMBL
Match: tr|A0A1U8PL38|A0A1U8PL38_GOSHI (zinc finger CCCH domain-containing protein 23-like OS=Gossypium hirsutum OX=3635 GN=LOC107959488 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 6.8e-73
Identity = 162/289 (56.06%), Postives = 183/289 (63.32%), Query Frame = 0


Query: 30  SFWEEQDLPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFSY 89
           S  ++ DLP  VDAF+CD FRMYEFKVR CARGRSHDWT+CPYAH GEKARRRDPRKF Y
Sbjct: 64  SLSDDSDLP--VDAFSCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHY 123

Query: 90  SGTECPALRHGCCKKGDACEFAHGTFESWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQL 149
           SGT CP  R G CKKGD+CEFAHG FE WLHP RYRTQPC+DG +C+RRVCFFAHT EQL
Sbjct: 124 SGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTSCQRRVCFFAHTPEQL 183

Query: 150 RIPAKQSLMSPRAAKEIAA--------------AVTSPTSILISPDSXXXXXXXXVTTGG 209
           R+  +Q   SPR     +A               V+SPTSIL SP      XXXX    G
Sbjct: 184 RVLPQQ---SPRGNGSASADLDYVVSPMRHRLEFVSSPTSILASPPISPPSXXXXXXXSG 243

Query: 210 --ESFSRLVPLMHNLQLDKSKKNPAVS-------------------GFDSSP-------- 269
              S S L   M +LQL KSK N A S                   GF SSP        
Sbjct: 244 SFNSVSELAASMRSLQLGKSKMNGACSWGLQMGSGFSSPRGSTLRPGFCSSPSTPTRTPT 303

Query: 270 RRNSGGFDLWD-RTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRP 275
           R + G FD+W+    +EEPAMERVESGRNLRA+MYAKL +ENS+ R+ P
Sbjct: 304 RSSLGQFDIWEFNAVQEEPAMERVESGRNLRARMYAKLSKENSIGRLEP 347

The following BLAST results are available for this feature:

BLAST of Carg23979-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951066.1	2.6e-148	98.15	zinc finger CCCH domain-containing protein 20-like [Cucurbita moschata]	[more]
XP_023537964.1	6.3e-147	97.41	zinc finger CCCH domain-containing protein 20-like [Cucurbita pepo subsp. pepo]	[more]
XP_023002826.1	4.1e-146	95.22	zinc finger CCCH domain-containing protein 20-like [Cucurbita maxima]	[more]
XP_008444505.1	1.3e-120	77.94	PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 20 [C...	[more]
XP_023545606.1	4.3e-119	76.84	zinc finger CCCH domain-containing protein 20-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg23979-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G19810.1	6.4e-69	50.56	CCCH-type zinc finger family protein	[more]
AT2G25900.1	6.9e-63	48.36	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT4G29190.1	1.9e-60	46.77	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G03790.1	2.1e-43	55.17	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G41900.1	2.1e-43	50.31	CCCH-type zinc finger protein with ARM repeat domain	[more]

BLAST of Carg23979-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O82199\|C3H20_ARATH	1.2e-67	50.56	Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|O82307\|C3H23_ARATH	1.2e-61	48.36	Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|Q9M0G2\|C3H49_ARATH	3.4e-59	46.77	Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|Q9FU27\|C3H2_ORYSJ	3.9e-55	75.59	Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=...	[more]
sp\|Q6L4N4\|C3H35_ORYSJ	4.0e-52	73.17	Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of Carg23979-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BBA7\|A0A1S3BBA7_CUCME	8.8e-121	77.94	LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 20 OS=Cucumis me...	[more]
tr\|A0A0A0LNN8\|A0A0A0LNN8_CUCSA	8.2e-119	77.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G352420 PE=4 SV=1	[more]
tr\|Q5NDD3\|Q5NDD3_CUCSA	5.3e-118	77.12	Putative CCCH-type zinc finger protein CsSEF1 OS=Cucumis sativus OX=3659 GN=se2c...	[more]
tr\|A0A0D2TJL3\|A0A0D2TJL3_GOSRA	5.2e-73	56.06	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G047600 PE=4 ...	[more]
tr\|A0A1U8PL38\|A0A1U8PL38_GOSHI	6.8e-73	56.06	zinc finger CCCH domain-containing protein 23-like OS=Gossypium hirsutum OX=3635...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000571	Znf_CCCH

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg23979	Carg23979	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg23979-RA.CDS.1	Carg23979-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg23979-RA.exon.1	Carg23979-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg23979-RA	Carg23979-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 88..114 e-value: 0.099 score: 21.7 coord: 123..146 e-value: 9.0 score: 8.6
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 88..115 score: 11.479
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 123..147 score: 6.071
None	No IPR available	GENE3D	G3DSA:4.10.1000.10		coord: 84..156 e-value: 6.3E-6 score: 28.1
None	No IPR available	PANTHER	PTHR14493:SF74	RING FINGER PROTEIN UNKEMPT	coord: 29..192
None	No IPR available	PANTHER	PTHR14493	UNCHARACTERIZED	coord: 29..192