Carg23964-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23964-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Myb transcription factor family protein, putative
Location	Cucurbita_argyrosperma_scaffold_253 : 172119 .. 173699 (-)
Sequence length	870

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAGAGAGAAAATGGTGAGGAAATGTTCCCATTGTGGCAATGTGGGTCACAATTCAAGAACTTGCATCATTCAAAAAGAAAAGATTAGAGGTAAATTTAAGCTGTTTGGAGTTCATCTTGATGGAGTTTCATCTTCTTCGGCGGCGGCGACGGTGGCGGGAGCGGCGGCGGCCGCCTTGTTGAAGAAGAGCATTAGCTTGGATTGTTTACCTTCTTCTTCTTCCTCCTCTTCTTGTGAGAAATTGTCAAATGGGTATCTCTCAGATGACCTCATTACCAAAACCCATGAAAGAAAAAAGGGTATGTTCCCATTTGTTGTTTGAAAGCTTAAGCTGATAGATTACGGTATATTTCGTTCGTTTCTTGTGTCGAAACCTTTTCGATCTTCTTCTTTGAAAAATGATTATGTGATTGTGTTTATGGTATTGTTAAGGTGTGCCATGGACTGAAGAAGAGCATAGAATGTTTCTTGTTGGGTTACAAAAGCTTGGAAAAGGAGATTGGAGAGGAATCTCGAGGAAATTTGTTACTACGAGAACTCCGACTCAAGTGGCTAGCCATGCACAAAAGTACTTTCTTCGACTCAATAGTCTCGACAAAAGAAAACACCGCCGCCCGAGCTTATTCGATGTAATTTCCCTTCAAACCTCTTCTTCATCTTTCAATCCAACTTTTTTTTTCATTCTTAGAAAAAGATTGAATTTTGAAGAATAACCCACTTTTTTAAGATAATGAATATTCATATTAAACAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCAGTAAGTCCCAACAATCCAATTGTTGCCATTAGAAAATTATGAAGAATGTTATTAAAATAACCCTCTTGTGTTTGTTTACTTGAATTTCCATTTTCATTGACTCATTAAATGCATAAACTGCTGAAAGAGATGATATTAGCAGTGCCTATCTATAATATATAATAATAAACTTATATGACATAATACTTTGAATTAAAAGTAATTTAGAGAAATAAAAAGGTCAAACTTTCTTCTTTAGATTTTTTTTCTTCTGGTTGAAATTTCTACTATTCATTAAATATTATGTTGGGTAAGTTTATCGGTATTCCGAGACTAAATTGAAACTTTTTAAACACCGAAGACTACGTATAATTAACTTTTTCATCGTGATCTATGAATGGTAGGTAGCTACAAGGGACAAATTCAGAGTGCAAGTGGTGAAGGGCAACAATTCCAAGCCAAGCAACCTGCCTCCATCCATTTCCTTTGGGATTCCATCAAATTCAACTCCAATTCATAATCATGTTCATCAAAGTTTATTACCCATTTGGTTTGGTTATGAAGATCACAAGGCAGTCAAATTCCTTGAGAACCCCATCAAATGTTCGAGCTCAAGCAGCCATTTTCATGGGAAACAGAAGACAAAGAGCCATCATCAAGCTCCTGATTTGCAGCTGAGTTTGTCCACTCCAAAACCAGTAGAGCAAGCTGAGCAGCAGCAGCAGCAGCATTGCTGCAGAAATATACCCATTAATGGAGCCATTTCAGTGACGTGA

mRNA sequence

AAGAGAGAGAAAATGGTGAGGAAATGTTCCCATTGTGGCAATGTGGGTCACAATTCAAGAACTTGCATCATTCAAAAAGAAAAGATTAGAGGTAAATTTAAGCTGTTTGGAGTTCATCTTGATGGAGTTTCATCTTCTTCGGCGGCGGCGACGGTGGCGGGAGCGGCGGCGGCCGCCTTGTTGAAGAAGAGCATTAGCTTGGATTGTTTACCTTCTTCTTCTTCCTCCTCTTCTTGTGAGAAATTGTCAAATGGGTATCTCTCAGATGACCTCATTACCAAAACCCATGAAAGAAAAAAGGGTGTGCCATGGACTGAAGAAGAGCATAGAATGTTTCTTGTTGGGTTACAAAAGCTTGGAAAAGGAGATTGGAGAGGAATCTCGAGGAAATTTGTTACTACGAGAACTCCGACTCAAGTGGCTAGCCATGCACAAAAGTACTTTCTTCGACTCAATAGTCTCGACAAAAGAAAACACCGCCGCCCGAGCTTATTCGATGTAGCTACAAGGGACAAATTCAGAGTGCAAGTGGTGAAGGGCAACAATTCCAAGCCAAGCAACCTGCCTCCATCCATTTCCTTTGGGATTCCATCAAATTCAACTCCAATTCATAATCATGTTCATCAAAGTTTATTACCCATTTGGTTTGGTTATGAAGATCACAAGGCAGTCAAATTCCTTGAGAACCCCATCAAATGTTCGAGCTCAAGCAGCCATTTTCATGGGAAACAGAAGACAAAGAGCCATCATCAAGCTCCTGATTTGCAGCTGAGTTTGTCCACTCCAAAACCAGTAGAGCAAGCTGAGCAGCAGCAGCAGCAGCATTGCTGCAGAAATATACCCATTAATGGAGCCATTTCAGTGACGTGA

Coding sequence (CDS)

ATGGTGAGGAAATGTTCCCATTGTGGCAATGTGGGTCACAATTCAAGAACTTGCATCATTCAAAAAGAAAAGATTAGAGGTAAATTTAAGCTGTTTGGAGTTCATCTTGATGGAGTTTCATCTTCTTCGGCGGCGGCGACGGTGGCGGGAGCGGCGGCGGCCGCCTTGTTGAAGAAGAGCATTAGCTTGGATTGTTTACCTTCTTCTTCTTCCTCCTCTTCTTGTGAGAAATTGTCAAATGGGTATCTCTCAGATGACCTCATTACCAAAACCCATGAAAGAAAAAAGGGTGTGCCATGGACTGAAGAAGAGCATAGAATGTTTCTTGTTGGGTTACAAAAGCTTGGAAAAGGAGATTGGAGAGGAATCTCGAGGAAATTTGTTACTACGAGAACTCCGACTCAAGTGGCTAGCCATGCACAAAAGTACTTTCTTCGACTCAATAGTCTCGACAAAAGAAAACACCGCCGCCCGAGCTTATTCGATGTAGCTACAAGGGACAAATTCAGAGTGCAAGTGGTGAAGGGCAACAATTCCAAGCCAAGCAACCTGCCTCCATCCATTTCCTTTGGGATTCCATCAAATTCAACTCCAATTCATAATCATGTTCATCAAAGTTTATTACCCATTTGGTTTGGTTATGAAGATCACAAGGCAGTCAAATTCCTTGAGAACCCCATCAAATGTTCGAGCTCAAGCAGCCATTTTCATGGGAAACAGAAGACAAAGAGCCATCATCAAGCTCCTGATTTGCAGCTGAGTTTGTCCACTCCAAAACCAGTAGAGCAAGCTGAGCAGCAGCAGCAGCAGCATTGCTGCAGAAATATACCCATTAATGGAGCCATTTCAGTGACGTGA

Protein sequence

MVRKCSHCGNVGHNSRTCIIQKEKIRGKFKLFGVHLDGVSSSSAAATVAGAAAAALLKKSISLDCLPSSSSSSSCEKLSNGYLSDDLITKTHERKKGVPWTEEEHRMFLVGLQKLGKGDWRGISRKFVTTRTPTQVASHAQKYFLRLNSLDKRKHRRPSLFDVATRDKFRVQVVKGNNSKPSNLPPSISFGIPSNSTPIHNHVHQSLLPIWFGYEDHKAVKFLENPIKCSSSSSHFHGKQKTKSHHQAPDLQLSLSTPKPVEQAEQQQQQHCCRNIPINGAISVT

Homology

[Close]

BLAST of Carg23964-RA vs. NCBI nr
Match: XP_022951726.1 (probable transcription factor At5g61620 [Cucurbita moschata])

HSP 1 Score: 434.9 bits (1117), Expect = 2.1e-118
Identity = 284/285 (99.65%), Postives = 285/285 (100.00%), Query Frame = 0


Query: 1   MVRKCSHCGNVGHNSRTCIIQKEKIRGKFKLFGVHLDGVSXXXXXXXXXXXXXXXXXXXX 60
           MVRKCSHCGNVGHNSRTCIIQKEKIRGKFKLFGVHLDGVSXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MVRKCSHCGNVGHNSRTCIIQKEKIRGKFKLFGVHLDGVSXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXCEKLSNGYLSDDLITKTHERKKGVPWTEEEHRMFLVGLQKLGKGDW 120
           XXXXXXXXXXXXXXCEKLSNGYLSDDLITKTHERKKGVPWTEEEHRMFLVGLQKLGKGDW
Sbjct: 61  XXXXXXXXXXXXXXCEKLSNGYLSDDLITKTHERKKGVPWTEEEHRMFLVGLQKLGKGDW 120

Query: 121 RGISRKFVTTRTPTQVASHAQKYFLRLNSLDKRKHRRPSLFDVATRDKFRVQVVKGNNSK 180
           RGISRKFVTTRTPTQVASHAQKYFLRLNSLDKRKHRRPSLFDVATRDKFRVQVVKGNNSK
Sbjct: 121 RGISRKFVTTRTPTQVASHAQKYFLRLNSLDKRKHRRPSLFDVATRDKFRVQVVKGNNSK 180

Query: 181 PSNLPPSISFGIPSNSTPIHNHVHQSLLPIWFGYEDHKAVKFLENPIKCSSSSSHFXXXX 240
           PSNLPPSISFGIPSNSTPIHNHVHQSLLPIWFGYEDHKAVKF+ENPIKCSSSSSHFXXXX
Sbjct: 181 PSNLPPSISFGIPSNSTPIHNHVHQSLLPIWFGYEDHKAVKFVENPIKCSSSSSHFXXXX 240

Query: 241 XXXXXXXXPXXXXXXXXXXXXXXXXXXXXXHCCRNIPINGAISVT 286
           XXXXXXXXPXXXXXXXXXXXXXXXXXXXXXHCCRNIPINGAISVT
Sbjct: 241 XXXXXXXXPXXXXXXXXXXXXXXXXXXXXXHCCRNIPINGAISVT 285

[Close]

BLAST of Carg23964-RA vs. NCBI nr
Match: XP_023538241.1 (probable transcription factor At5g61620 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 427.2 bits (1097), Expect = 4.5e-116
Identity = 250/285 (87.72%), Postives = 250/285 (87.72%), Query Frame = 0


Query: 1   MVRKCSHCGNVGHNSRTCIIQKEKIRGKFKLFGVHLDGVSXXXXXXXXXXXXXXXXXXXX 60
           MVRKCSHCGNVGHNSRTCIIQKEKIRGKFKLFGVHLDGVSXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MVRKCSHCGNVGHNSRTCIIQKEKIRGKFKLFGVHLDGVSXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXCEKLSNGYLSDDLITKTHERKKGVPWTEEEHRMFLVGLQKLGKGDW 120
           XXXXXXXXXXXXXXCEKLSNGYLSD LITKTHERKKGVPWTEEEHRMFLVGLQKLGKGDW
Sbjct: 61  XXXXXXXXXXXXXXCEKLSNGYLSDGLITKTHERKKGVPWTEEEHRMFLVGLQKLGKGDW 120

Query: 121 RGISRKFVTTRTPTQVASHAQKYFLRLNSLDKRKHRRPSLFDVATRDKFRVQVVKGNNSK 180
           RGISRKFVTTRTPTQVASHAQKYFLRLNSLDKRKHRRPSLFDVATRDKFRVQVVKGNNSK
Sbjct: 121 RGISRKFVTTRTPTQVASHAQKYFLRLNSLDKRKHRRPSLFDVATRDKFRVQVVKGNNSK 180

Query: 181 PSNLPPSISFGIPSNSTPIHNHVHQSLLPIWFGYEDHKAVKFLENPIKCSSSSSHFXXXX 240
           PSNLPPSISFGIPSNSTPIHNHVHQSLLPIWFGYEDHKA KFLENPIKCSSSSSHF    
Sbjct: 181 PSNLPPSISFGIPSNSTPIHNHVHQSLLPIWFGYEDHKAFKFLENPIKCSSSSSHFHGKQ 240

Query: 241 XXXXXXXXPXXXXXXXXXXXXXXXXXXXXXHCCRNIPINGAISVT 286
                   P                     HCCRNIPINGAISVT
Sbjct: 241 KTKSHHQAP--DLQLSLSTPKPVEQAEQQQHCCRNIPINGAISVT 283

[Close]

BLAST of Carg23964-RA vs. NCBI nr
Match: XP_023002636.1 (probable transcription factor At5g61620 [Cucurbita maxima])

HSP 1 Score: 412.9 bits (1060), Expect = 8.7e-112
Identity = 245/286 (85.66%), Postives = 247/286 (86.36%), Query Frame = 0


Query: 1   MVRKCSHCGNVGHNSRTCIIQKEKIRGKFKLFGVHLDGVSXXXXXXXXXXXXXXXXXXXX 60
           MVRKCSHCGNVGHNSRTCIIQKEKIRGKFKLFGVHLDGVS XXXXXXXXXXXXXXXXXXX
Sbjct: 1   MVRKCSHCGNVGHNSRTCIIQKEKIRGKFKLFGVHLDGVS-XXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXCEKLSNGYLSDDLITKTHERKKGVPWTEEEHRMFLVGLQKLGKGDW 120
           XXXXXXXXXXXXXXCEKLSNGYLSDDLITKTHERKKGVPWTEEEHRMFLVGLQKLGKGDW
Sbjct: 61  XXXXXXXXXXXXXXCEKLSNGYLSDDLITKTHERKKGVPWTEEEHRMFLVGLQKLGKGDW 120

Query: 121 RGISRKFVTTRTPTQVASHAQKYFLRLNSLDKRKHRRPSLFDVATRDKFRVQVVKGNNSK 180
           RGISRKFVTTRTPTQVASHAQKYFLRLNSLDKRKHRRPSLFDVAT DKFRVQVVK NNSK
Sbjct: 121 RGISRKFVTTRTPTQVASHAQKYFLRLNSLDKRKHRRPSLFDVATMDKFRVQVVKVNNSK 180

Query: 181 PSNLPPSISFGIPSNSTPIHNHVHQSLLPIWFGYEDHKAVKFLENPIKCSSSSSHFXXXX 240
           PS+LPPSISFGIPSNSTPIHNHVHQSLLPIWFGYEDHKA KFLENPIKCS+SSSHF    
Sbjct: 181 PSSLPPSISFGIPSNSTPIHNHVHQSLLPIWFGYEDHKAFKFLENPIKCSNSSSHFHGKQ 240

Query: 241 XXXXXXXXP-XXXXXXXXXXXXXXXXXXXXXHCCRNIPINGAISVT 286
                   P                      HCCRNI INGAISVT
Sbjct: 241 KTESHHQAPDLQLSLSTPKPVEQAEQQQQQPHCCRNIRINGAISVT 285

[Close]

BLAST of Carg23964-RA vs. NCBI nr
Match: AXF54212.1 (MYB7 [Cucurbita pepo])

HSP 1 Score: 288.1 bits (736), Expect = 3.2e-74
Identity = 145/179 (81.01%), Postives = 145/179 (81.01%), Query Frame = 0


Query: 107 MFLVGLQKLGKGDWRGISRKFVTTRTPTQVASHAQKYFLRLNSLDKRKHRRPSLFDVATR 166
           MFLVGLQKLGKGDWRGISRKFVTTRTPTQVASHAQKYFLRLNSLDKRKHRRPSLFDVATR
Sbjct: 1   MFLVGLQKLGKGDWRGISRKFVTTRTPTQVASHAQKYFLRLNSLDKRKHRRPSLFDVATR 60

Query: 167 DKFRVQVVKGNNSKPSNLPPSISFGIPSNSTPIHNHVHQSLLPIWFGYEDHKAVKFLENP 226
           DKFRVQVVKGNNSKPSNLPPSISFGIPSNSTPIHNHVHQSLLPIWFGYEDHKA KFLENP
Sbjct: 61  DKFRVQVVKGNNSKPSNLPPSISFGIPSNSTPIHNHVHQSLLPIWFGYEDHKAFKFLENP 120

Query: 227 IKCSSSSSHFXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXXHCCRNIPINGAISVT 286
           IKCSSSSSHF            P                     HCCRNIPINGAISVT
Sbjct: 121 IKCSSSSSHFHGKQKTKSHHQAP--DLQLSLSTPKPVEQAEQQQHCCRNIPINGAISVT 177

[Close]

BLAST of Carg23964-RA vs. NCBI nr
Match: XP_022131428.1 (transcription factor MYBS3-like isoform X1 [Momordica charantia])

HSP 1 Score: 241.1 bits (614), Expect = 4.5e-60
Identity = 142/234 (60.68%), Postives = 156/234 (66.67%), Query Frame = 0


Query: 1   MVRKCSHCGNVGHNSRTCIIQKEKIRGKFKLFGVHLDGVSXXXXXXXXXXXXXXXXXXXX 60
           M RKCSHCG VGHNSRTC      IRG+FKLFGV LDG +                XXXX
Sbjct: 1   MGRKCSHCGKVGHNSRTC-----TIRGRFKLFGVQLDGAAMKKSFSLDCLPSSSSTXXXX 60

Query: 61  XXXXXXXXXXXXXXCEKLSNGYLSDDLITKTHERKKGVPWTEEEHRMFLVGLQKLGKGDW 120
                           KL+ GYLSD LITKTHERKKGVPW+EEEHR+FLVGL+KLGKGDW
Sbjct: 61  SSDI------------KLATGYLSDGLITKTHERKKGVPWSEEEHRVFLVGLEKLGKGDW 120

Query: 121 RGISRKFVTTRTPTQVASHAQKYFLRLNSLDKRKHRRPSLFDVATRDKFRVQVVK--GNN 180
           RGISRKFVTTRTPTQVASHAQKYFLRL +L ++KH RPSLFD   RDKF +QVV+   +N
Sbjct: 121 RGISRKFVTTRTPTQVASHAQKYFLRLTTLTRKKHCRPSLFDGGARDKFTMQVVESSNSN 180

Query: 181 SKP-SNLPPS---ISFGIPS-NSTPIH---------NHVHQSLLPIWFGYEDHK 219
           SKP SNLP S   ISFGIPS NSTPI+                +PIWFGYE  K
Sbjct: 181 SKPTSNLPASPSNISFGIPSKNSTPINIPKMTLNXXXXXXXXXVPIWFGYEPSK 217

[Close]

BLAST of Carg23964-RA vs. TAIR10
Match: AT5G56840.1 (myb-like transcription factor family protein)

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-38
Identity = 120/221 (54.30%), Postives = 137/221 (61.99%), Query Frame = 0


Query: 1   MVRKCSHCGNVGHNSRTCIIQKEKIRGKFKLFGVHLDGVSXXXXXXXXXXXXXXXXXXXX 60
           M R+CSHCGNVGHNSRTC   + ++    +LFGVHLD        XXXXXXXXXXXXXXX
Sbjct: 1   MGRRCSHCGNVGHNSRTCSSYQTRV---VRLFGVHLD-------TXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXCEKLSN---GYLSDDLITKTHERKKGVPWTEEEHRMFLVGLQKLGK 120
           XXXXXX        C   S+   GYLSD L  KT +RKKGVPWT EEHR FL+GL+KLGK
Sbjct: 61  XXXXXXFSMDCLPACSSSSSSFAGYLSDGLAHKTPDRKKGVPWTAEEHRTFLIGLEKLGK 120

Query: 121 GDWRGISRKFVTTRTPTQVASHAQKYFLRLNSLDKRKHRRPSLFDVATRDKFRVQVVKGN 180
           GDWRGISR FV T++PTQVASHAQKYFLR  +    K RR SLFD+         V  GN
Sbjct: 121 GDWRGISRNFVVTKSPTQVASHAQKYFLRQTTTLHHKRRRTSLFDM---------VSAGN 180

Query: 181 NSKPSNLPPSISFGIPSNSTPIHNHVHQSLLPIWFGYEDHK 219
             + S      +  I S+S  +     Q LL    GY D K
Sbjct: 181 VEENSTTKRICNDHIGSSSKVVWK---QGLLNPRLGYPDPK 199

[Close]

BLAST of Carg23964-RA vs. TAIR10
Match: AT5G47390.1 (myb-like transcription factor family protein)

HSP 1 Score: 146.0 bits (367), Expect = 3.6e-35
Identity = 89/167 (53.29%), Postives = 105/167 (62.87%), Query Frame = 0


Query: 1   MVRKCSHCGNVGHNSRTCIIQKEKIRGKFKLFGVHL-DGVSXXXXXXXXXXXXXXXXXXX 60
           M R+CSHC + GHNSRTC       RG  KLFGV L +G                    X
Sbjct: 1   MTRRCSHCNHNGHNSRTC-----PNRG-VKLFGVRLTEGSIRKSASMGNLSHYTGSGSGX 60

Query: 61  XXXXXXXXXXXXXXXCEKLSNGYLSDDLI---TKTHERKKGVPWTEEEHRMFLVGLQKLG 120
           XXXXX               +GY S+D +   + + ERKKG PWTEEEHRMFL+GLQKLG
Sbjct: 61  XXXXXNTPGSPGDVPDHVAGDGYASEDFVAGSSSSRERKKGTPWTEEEHRMFLLGLQKLG 120

Query: 121 KGDWRGISRKFVTTRTPTQVASHAQKYFLRLNSLDKRKHRRPSLFDV 164
           KGDWRGISR +VTTRTPTQVASHAQKYF+R +++ +RK RR SLFD+
Sbjct: 121 KGDWRGISRNYVTTRTPTQVASHAQKYFIRQSNVSRRK-RRSSLFDM 160

[Close]

BLAST of Carg23964-RA vs. TAIR10
Match: AT3G16350.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 135.2 bits (339), Expect = 6.4e-32
Identity = 98/245 (40.00%), Postives = 113/245 (46.12%), Query Frame = 0


Query: 1   MVRKCSHCGNVGHNSRTC------------------IIQKEKIRGKFKLFGVHLDGVSXX 60
           M R+CSHC N GHNSRTC                             KLFGV L   S  
Sbjct: 1   MTRRCSHCSNNGHNSRTCPTRXXXXXXXXXXXXXXXXXXXXXXXXXVKLFGVRLTDGSII 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCE----------KLSN-----GYLSDD- 120
                                                       + SN     GYLSDD 
Sbjct: 61  KKSASMGNLSALAVAAAAATHHRLSPSSPLATSNLNDSPLSDHARYSNLHHNEGYLSDDP 120

Query: 121 -----LITKTHERKKGVPWTEEEHRMFLVGLQKLGKGDWRGISRKFVTTRTPTQVASHAQ 180
                   +  ERK+GVPWTEEEHR+FLVGLQKLGKGDWRGISR +VT+RTPTQVASHAQ
Sbjct: 121 AHGSGSSHRRGERKRGVPWTEEEHRLFLVGLQKLGKGDWRGISRNYVTSRTPTQVASHAQ 180

Query: 181 KYFLRLNSLDKRKHRRPSLFDVAT----RDKFRVQVVKG-NNSKPSNLPPSISFGIPSNS 202
           KYF+R  S  +RK RR SLFD+ T     D    Q  +  N S PS  P   S+ +PS  
Sbjct: 181 KYFIRHTSSSRRK-RRSSLFDMVTDEMVTDSSPTQEEQTLNGSSPSKEPEKKSY-LPSLE 240

[Close]

BLAST of Carg23964-RA vs. TAIR10
Match: AT1G70000.1 (myb-like transcription factor family protein)

HSP 1 Score: 134.8 bits (338), Expect = 8.3e-32
Identity = 82/181 (45.30%), Postives = 96/181 (53.04%), Query Frame = 0


Query: 1   MVRKCSHCGNVGHNSRTCII-------QKEKIRGK--FKLFGVHLDGVSXXXXXXXXXXX 60
           M R CS CGN GHNSRTC           +K  G+    LFGV +   S           
Sbjct: 1   MSRSCSQCGNNGHNSRTCPTDITTTGDNNDKGGGEKAIMLFGVRVTEASSSCFRKSVSMN 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXCEKLSNGYLSDDLI---TKTHERKKGVPWTEEEHRMF 120
                                        GY SDD++    +  ERK+G PWTEEEHR+F
Sbjct: 61  NLSQFDQTPDPNPTD------------DGGYASDDVVHASGRNRERKRGTPWTEEEHRLF 120

Query: 121 LVGLQKLGKGDWRGISRKFVTTRTPTQVASHAQKYFLRLNSLDKRKHRRPSLFDVATRDK 170
           L GL K+GKGDWRGISR FV TRTPTQVASHAQKYFLR  + ++R+ RR SLFD+ T D 
Sbjct: 121 LTGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRTNQNRRR-RRSSLFDI-TPDS 167

[Close]

BLAST of Carg23964-RA vs. TAIR10
Match: AT5G61620.1 (myb-like transcription factor family protein)

HSP 1 Score: 126.7 bits (317), Expect = 2.3e-29
Identity = 63/93 (67.74%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 81  GYLSDDLI-----TKTHERKKGVPWTEEEHRMFLVGLQKLGKGDWRGISRKFVTTRTPTQ 140
           GY SD  I        HE+KKG PWTEEEHR FL+GL KLGKGDWRGI++ FV+TRTPTQ
Sbjct: 86  GYHSDGQIHSKKGKTAHEKKKGKPWTEEEHRNFLIGLNKLGKGDWRGIAKSFVSTRTPTQ 145

Query: 141 VASHAQKYFLRLNSLDKRKHRRPSLFDVATRDK 169
           VASHAQKYF+RLN  DKRK RR SLFD++  D+
Sbjct: 146 VASHAQKYFIRLNVNDKRK-RRASLFDISLEDQ 177

[Close]

BLAST of Carg23964-RA vs. Swiss-Prot
Match: sp|Q9LVS0|KUA1_ARATH (Transcription factor KUA1 OS=Arabidopsis thaliana OX=3702 GN=KUA1 PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.5e-34
Identity = 89/167 (53.29%), Postives = 105/167 (62.87%), Query Frame = 0


Query: 1   MVRKCSHCGNVGHNSRTCIIQKEKIRGKFKLFGVHL-DGVSXXXXXXXXXXXXXXXXXXX 60
           M R+CSHC + GHNSRTC       RG  KLFGV L +G                    X
Sbjct: 1   MTRRCSHCNHNGHNSRTC-----PNRG-VKLFGVRLTEGSIRKSASMGNLSHYTGSGSGX 60

Query: 61  XXXXXXXXXXXXXXXCEKLSNGYLSDDLI---TKTHERKKGVPWTEEEHRMFLVGLQKLG 120
           XXXXX               +GY S+D +   + + ERKKG PWTEEEHRMFL+GLQKLG
Sbjct: 61  XXXXXNTPGSPGDVPDHVAGDGYASEDFVAGSSSSRERKKGTPWTEEEHRMFLLGLQKLG 120

Query: 121 KGDWRGISRKFVTTRTPTQVASHAQKYFLRLNSLDKRKHRRPSLFDV 164
           KGDWRGISR +VTTRTPTQVASHAQKYF+R +++ +RK RR SLFD+
Sbjct: 121 KGDWRGISRNYVTTRTPTQVASHAQKYFIRQSNVSRRK-RRSSLFDM 160

[Close]

BLAST of Carg23964-RA vs. Swiss-Prot
Match: sp|Q7XC57|MYBS3_ORYSJ (Transcription factor MYBS3 OS=Oryza sativa subsp. japonica OX=39947 GN=MYBS3 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.2e-29
Identity = 79/180 (43.89%), Postives = 97/180 (53.89%), Query Frame = 0


Query: 1   MVRKCSHCGNVGHNSRTCIIQKEKIRGKFKLFGVHLDGVSXXXXXXXXXXXXXXXXXXXX 60
           M R+CSH       SRTC       RG  K+FGV L   S                    
Sbjct: 1   MTRRCSHXXXXXXXSRTC-----PNRG-VKIFGVRLTDGS--IRKSASMGNLSLLSSAAG 60

Query: 61  XXXXXXXXXXXXXXCEKLSNGYLSDDLI----TKTHERKKGVPWTEEEHRMFLVGLQKLG 120
                             ++GY SDD +    + T +RKKGVPWTEEEHR FL+GLQKLG
Sbjct: 61  STSGGASPADGPDAAPTAADGYASDDFVQGSSSATRDRKKGVPWTEEEHRRFLLGLQKLG 120

Query: 121 KGDWRGISRKFVTTRTPTQVASHAQKYFLRLNSLDKRKHRRPSLFDVATRDKFRVQVVKG 177
           KGDWRGISR FV +RTPTQVASHAQKYF+R +++ +RK RR SLFD+   +   +  + G
Sbjct: 121 KGDWRGISRNFVVSRTPTQVASHAQKYFIRQSNMTRRK-RRSSLFDMVPDESMDLPPLPG 171

[Close]

BLAST of Carg23964-RA vs. Swiss-Prot
Match: sp|Q9FKF9|M5162_ARATH (Probable transcription factor At5g61620 OS=Arabidopsis thaliana OX=3702 GN=At5g61620 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.1e-28
Identity = 63/93 (67.74%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 81  GYLSDDLI-----TKTHERKKGVPWTEEEHRMFLVGLQKLGKGDWRGISRKFVTTRTPTQ 140
           GY SD  I        HE+KKG PWTEEEHR FL+GL KLGKGDWRGI++ FV+TRTPTQ
Sbjct: 86  GYHSDGQIHSKKGKTAHEKKKGKPWTEEEHRNFLIGLNKLGKGDWRGIAKSFVSTRTPTQ 145

Query: 141 VASHAQKYFLRLNSLDKRKHRRPSLFDVATRDK 169
           VASHAQKYF+RLN  DKRK RR SLFD++  D+
Sbjct: 146 VASHAQKYFIRLNVNDKRK-RRASLFDISLEDQ 177

[Close]

BLAST of Carg23964-RA vs. Swiss-Prot
Match: sp|Q2V9B0|MY1R1_SOLTU (Transcription factor MYB1R1 OS=Solanum tuberosum OX=4113 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.5e-27
Identity = 71/142 (50.00%), Postives = 93/142 (65.49%), Query Frame = 0


Query: 81  GYLS-DDLI----TKTHERKKGVPWTEEEHRMFLVGLQKLGKGDWRGISRKFVTTRTPTQ 140
           GY S DD +        ERK+GVPWTEEEH++FL+GLQK+GKGDWRGISR FV TRTPTQ
Sbjct: 73  GYASADDAVQHQSNSGRERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQ 132

Query: 141 VASHAQKYFLRLNSLDKRKHRRPSLFDVATRDKFRVQVVKGNNSK-------PSNLPPSI 200
           VASHAQKYFLR ++L++R+ RR SLFD+ T D   V  ++   +K       P+ LP + 
Sbjct: 133 VASHAQKYFLRRSNLNRRR-RRSSLFDITT-DSVSVMPIEEVENKQEIPVVAPATLPTT- 192

Query: 201 SFGIPSNSTPIHNHVHQSLLPI 211
                +N+ P+   V   + P+
Sbjct: 193 ----KTNAFPVAPTVGPIIFPV 207

[Close]

BLAST of Carg23964-RA vs. Swiss-Prot
Match: sp|Q8S9H7|DIV_ANTMA (Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.5e-25
Identity = 62/108 (57.41%), Postives = 74/108 (68.52%), Query Frame = 0


Query: 93  ERKKGVPWTEEEHRMFLVGLQKLGKGDWRGISRKFVTTRTPTQVASHAQKYFLRLNSLDK 152
           ERKKGVPWTEEEH++FL+GL+K GKGDWR ISR FV TRTPTQVASHAQKYF+R  S  K
Sbjct: 127 ERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGK 186

Query: 153 RKHRRPSLFDVATRDKFRVQVVKGNNSKPSNLPPSISFGIPSNSTPIH 201
            K RR S+ D+ T +    Q    +N KP + P        ++ST IH
Sbjct: 187 DK-RRASIHDITTVNLSDNQTPSPDNKKPPSSPDHSMAQQQTSSTSIH 233

[Close]

BLAST of Carg23964-RA vs. TrEMBL
Match: tr|A0A1S3BB61|A0A1S3BB61_CUCME (myb-like protein I isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487788 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.5e-51
Identity = 167/267 (62.55%), Postives = 180/267 (67.42%), Query Frame = 0


Query: 1   MVRKCSHCGNVGHNSRTCIIQKEKIRGKFKLFGVHL------------DGVSXXXXXXXX 60
           MVRKCSHCGNVGHNSRTC IQK K   KFKLFGV L                XXXXXXXX
Sbjct: 1   MVRKCSHCGNVGHNSRTCTIQKHK-ETKFKLFGVQLIDXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXCEKLSNGYLSDDLITKTHERKKGVPWTEEEHRMF 120
           XXXXXXXXXXXXXXXXXXXXXXXXXX   LSNGYLSD L+ KTHERKKGVPW+EEEH++F
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSNGYLSDGLVAKTHERKKGVPWSEEEHKVF 120

Query: 121 LVGLQKLGKGDWRGISRKFVTTRTPTQVASHAQKYFLRLNSLDKRKHRRPSLFD--VATR 180
           LVGL+KLGKGDWRGISRKFVTTRTPTQVASHAQKYFLRL +L+KRK RRPSLFD   A R
Sbjct: 121 LVGLEKLGKGDWRGISRKFVTTRTPTQVASHAQKYFLRLTTLNKRKQRRPSLFDGSAAAR 180

Query: 181 DKFRVQVVK----------------GNNSKPSNLPPSISFGIPSNSTPIHNHVHQSLLPI 233
           DK  VQVV+                            ISFG   N TPI N    S L  
Sbjct: 181 DKLTVQVVEKXXXXXXXXXXXXXXXXXXXXXXXXXXXISFG---NPTPIQNISELSNLN- 240

[Close]

BLAST of Carg23964-RA vs. TrEMBL
Match: tr|A0A0A0LKT1|A0A0A0LKT1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351740 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 2.0e-51
Identity = 160/254 (62.99%), Postives = 181/254 (71.26%), Query Frame = 0


Query: 1   MVRKCSHCGNVGHNSRTCIIQKEKIRGKFKLFGVHL----DGVSXXXXXXXXXXXXXXXX 60
           MVRKCSHCGNVGHNSRTC IQK K   KFKLFGV L        XXXXXXXXXXXXXXXX
Sbjct: 1   MVRKCSHCGNVGHNSRTCTIQKHK-ETKFKLFGVQLIDNXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXCEKLSNGYLSDDLITKTHERKKGVPWTEEEHRMFLVGLQKLG 120
           XXXXXXXXXXXXXXXXXX   LSNGYLSD L+ KTHERKKGVPW+EEEH++FL+GL+KLG
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXLSNGYLSDGLVAKTHERKKGVPWSEEEHKVFLIGLEKLG 120

Query: 121 KGDWRGISRKFVTTRTPTQVASHAQKYFLRLNSLDKRKHRRPSLFD-VATRDKFRVQVVK 180
           KGDWRGISRKFVTTRTPTQVASHAQKYFLRL +L+KRK RRPSLFD  A RDK  VQVV+
Sbjct: 121 KGDWRGISRKFVTTRTPTQVASHAQKYFLRLTTLNKRKQRRPSLFDGAAARDKLTVQVVE 180

Query: 181 GN------------------NSKPSNLPPSISFGIPSNSTPIHNHVHQSLLPIWFGYEDH 231
                               N +P++   +ISFG P+    I    + + +   +    H
Sbjct: 181 XXXXXXXXXXXXXXXXXXXYNIQPAS-SNNISFGNPTPIPNISELTNLNWIEYHYNQRHH 240

[Close]

BLAST of Carg23964-RA vs. TrEMBL
Match: tr|A0A1S3BB87|A0A1S3BB87_CUCME (transcription factor MYB1R1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487788 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 6.5e-47
Identity = 138/178 (77.53%), Postives = 147/178 (82.58%), Query Frame = 0


Query: 1   MVRKCSHCGNVGHNSRTCIIQKEKIRGKFKLFGVHL------------DGVSXXXXXXXX 60
           MVRKCSHCGNVGHNSRTC IQK K   KFKLFGV L                XXXXXXXX
Sbjct: 1   MVRKCSHCGNVGHNSRTCTIQKHK-ETKFKLFGVQLIDXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXCEKLSNGYLSDDLITKTHERKKGVPWTEEEHRMF 120
           XXXXXXXXXXXXXXXXXXXXXXXXXX   LSNGYLSD L+ KTHERKKGVPW+EEEH++F
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSNGYLSDGLVAKTHERKKGVPWSEEEHKVF 120

Query: 121 LVGLQKLGKGDWRGISRKFVTTRTPTQVASHAQKYFLRLNSLDKRKHRRPSLFDVATR 167
           LVGL+KLGKGDWRGISRKFVTTRTPTQVASHAQKYFLRL +L+KRK RRPSLFD  ++
Sbjct: 121 LVGLEKLGKGDWRGISRKFVTTRTPTQVASHAQKYFLRLTTLNKRKQRRPSLFDCCSK 177

[Close]

BLAST of Carg23964-RA vs. TrEMBL
Match: tr|A0A2I4GQ25|A0A2I4GQ25_9ROSI (myb-like protein J OS=Juglans regia OX=51240 GN=LOC109009824 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.5e-43
Identity = 99/185 (53.51%), Postives = 114/185 (61.62%), Query Frame = 0


Query: 1   MVRKCSHCGNVGHNSRTCIIQKEKIRGKFKLFGVHLDGVSXXXXXXXXXXXXXXXXXXXX 60
           M RKCSHCGN+GHNSRTC   +       +LFGV LD +S                    
Sbjct: 1   MGRKCSHCGNIGHNSRTCTTYRGNSSAGLRLFGVQLD-LSSSSVAMKKSFSMDCLYSSPS 60

Query: 61  XXXXXXXXXXXXXXCEKLSNGYLSDDLITKTHERKKGVPWTEEEHRMFLVGLQKLGKGDW 120
                          +K + GYLSD LI +  ERKKGVPWTE+EHR FL+GL+KLGKGDW
Sbjct: 61  PSSSFSSGISIDENSDKTTIGYLSDGLIGRPQERKKGVPWTEDEHRTFLIGLEKLGKGDW 120

Query: 121 RGISRKFVTTRTPTQVASHAQKYFLRLNSLDKRKHRRPSLFDVATRDKFRVQVVKGNNSK 180
           RGISR +VTTRTPTQVASHAQKYFLR  SLDK+K RR SLFD+  R     Q  K +NSK
Sbjct: 121 RGISRNYVTTRTPTQVASHAQKYFLRQASLDKKK-RRSSLFDMVGRSNMCGQPAKSSNSK 180

Query: 181 PSNLP 186
           PS+ P
Sbjct: 181 PSDHP 183

[Close]

BLAST of Carg23964-RA vs. TrEMBL
Match: tr|D7STN2|D7STN2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_04s0008g00900 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.5e-43
Identity = 105/205 (51.22%), Postives = 120/205 (58.54%), Query Frame = 0


Query: 1   MVRKCSHCGNVGHNSRTCI-------IQKEKIRGKFKLFGVHLDGVS-XXXXXXXXXXXX 60
           M RKCSHCGN+GHNSRTC        +    + G  KLFGV L+  S             
Sbjct: 1   MGRKCSHCGNIGHNSRTCTTLRGSSGVSSSSLTGGVKLFGVQLEMPSTTPLPMKKSFSLD 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXCEKLSNGYLSDDLITKTHERKKGVPWTEEEHRMFLVGL 120
                                  +K S GYLSD LI +T ERKKGVPWTEEEHR FL+GL
Sbjct: 61  CLPSSSSTPSSSTSSRVSADENSDKFSRGYLSDGLIARTQERKKGVPWTEEEHRTFLLGL 120

Query: 121 QKLGKGDWRGISRKFVTTRTPTQVASHAQKYFLRLNSLDKRKHRRPSLFDVATRDKFRVQ 180
           +KLG+GDWRGISR FVTTRTPTQVASHAQKYFLR +SL+K+K RRPSLFD+    KF   
Sbjct: 121 EKLGRGDWRGISRNFVTTRTPTQVASHAQKYFLRQSSLNKKK-RRPSLFDLVESSKFSFH 180

Query: 181 VVKGNNSKPSNLPPSISFGIPSNST 198
           +V  N S P    PSI  G    +T
Sbjct: 181 LV--NPSIPQPNQPSIPCGFSLKTT 202

The following BLAST results are available for this feature:

BLAST of Carg23964-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951726.1	2.1e-118	99.65	probable transcription factor At5g61620 [Cucurbita moschata]	[more]
XP_023538241.1	4.5e-116	87.72	probable transcription factor At5g61620 [Cucurbita pepo subsp. pepo]	[more]
XP_023002636.1	8.7e-112	85.66	probable transcription factor At5g61620 [Cucurbita maxima]	[more]
AXF54212.1	3.2e-74	81.01	MYB7 [Cucurbita pepo]	[more]
XP_022131428.1	4.5e-60	60.68	transcription factor MYBS3-like isoform X1 [Momordica charantia]	[more]

BLAST of Carg23964-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G56840.1	1.2e-38	54.30	myb-like transcription factor family protein	[more]
AT5G47390.1	3.6e-35	53.29	myb-like transcription factor family protein	[more]
AT3G16350.1	6.4e-32	40.00	Homeodomain-like superfamily protein	[more]
AT1G70000.1	8.3e-32	45.30	myb-like transcription factor family protein	[more]
AT5G61620.1	2.3e-29	67.74	myb-like transcription factor family protein	[more]

BLAST of Carg23964-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LVS0\|KUA1_ARATH	6.5e-34	53.29	Transcription factor KUA1 OS=Arabidopsis thaliana OX=3702 GN=KUA1 PE=1 SV=1	[more]
sp\|Q7XC57\|MYBS3_ORYSJ	2.2e-29	43.89	Transcription factor MYBS3 OS=Oryza sativa subsp. japonica OX=39947 GN=MYBS3 PE=...	[more]
sp\|Q9FKF9\|M5162_ARATH	4.1e-28	67.74	Probable transcription factor At5g61620 OS=Arabidopsis thaliana OX=3702 GN=At5g6...	[more]
sp\|Q2V9B0\|MY1R1_SOLTU	4.5e-27	50.00	Transcription factor MYB1R1 OS=Solanum tuberosum OX=4113 PE=2 SV=1	[more]
sp\|Q8S9H7\|DIV_ANTMA	2.5e-25	57.41	Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 ...	[more]

BLAST of Carg23964-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BB61\|A0A1S3BB61_CUCME	1.5e-51	62.55	myb-like protein I isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487788 PE=4 SV=1	[more]
tr\|A0A0A0LKT1\|A0A0A0LKT1_CUCSA	2.0e-51	62.99	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351740 PE=4 SV=1	[more]
tr\|A0A1S3BB87\|A0A1S3BB87_CUCME	6.5e-47	77.53	transcription factor MYB1R1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487...	[more]
tr\|A0A2I4GQ25\|A0A2I4GQ25_9ROSI	1.5e-43	53.51	myb-like protein J OS=Juglans regia OX=51240 GN=LOC109009824 PE=4 SV=1	[more]
tr\|D7STN2\|D7STN2_VITVI	1.5e-43	51.22	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_04s0008g00900 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR001878	Znf_CCHC
IPR017930	Myb_dom
IPR006447	Myb_dom_plants
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg23964	Carg23964	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg23964-RA	Carg23964-RA-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg23964-RA.CDS.3	Carg23964-RA.CDS.3	CDS
Carg23964-RA.CDS.2	Carg23964-RA.CDS.2	CDS
Carg23964-RA.CDS.1	Carg23964-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg23964-RA.five_prime_UTR.1	Carg23964-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg23964-RA.exon.3	Carg23964-RA.exon.3	exon
Carg23964-RA.exon.2	Carg23964-RA.exon.2	exon
Carg23964-RA.exon.1	Carg23964-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 96..146 e-value: 6.4E-11 score: 52.3
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 99..143 e-value: 1.1E-11 score: 44.6
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 99..144 e-value: 3.77258E-9 score: 50.6518
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 98..151 e-value: 1.5E-16 score: 62.3
None	No IPR available	PANTHER	PTHR44377	FAMILY NOT NAMED	coord: 1..178
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 95..146 e-value: 2.3E-18 score: 64.2
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 92..148 score: 17.474
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 3..18 score: 8.532
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 93..149