Carg23952-RA (mRNA) Silver-seed gourd

Overview
NameCarg23952-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_253 : 120063 .. 120895 (+)
Sequence length414
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCATAATCAGCTCCGTTTGATTCGGTCAACGGTGAACTGGAAGCCACGTGGAGAATTCTTATTGGTGAATCTACCGAAAGGCTGATTGTACCTGATTCTCCAACGCATCACGTTTCCGAAATGGAAGATGAAAGACATAAAGAAAAAAACACATTTTAAAAATCCCATTAGAAGCGCCTTGAAGGAACAAACCAATCCAGATTTCTGAGGAGCGGAGAGGAGAGGAGTCGAGAGGGAGGCCCACGACGGAGTAGACGGGGGATCCGGCGGTTCCGCGAGGAAAGATTCCCTTTCCGTTGCGGTTGTCGAGAACGGTTTCGTTTTGTCTTTTTCACTAAGCTTTCGACAACGAACTGCGATTACTACTGCCTTTCTCCCGTCTCCACTCCGTTAAATCACGAGTACGTTTTTTTCTTTTCTTAATCTTTTGTTTGATTCTCTATTTTCGATGAATTTTCTTGTTTAGATAGGTTCTTTGGGGATTAGGTATTTTGTAGTTTTCGATTTAGAACTCTCTCTTGGAATTGGGGTTTTGATTTCATCGAAATCTGAATTGGTGGTTGAAGCGGATACTTGTTTTGATGGGATTTGTTGTGTTTGAGTTGTTATTTAATATTACGGTGATCAAATTCTGATGGGAGATCGGTATCTCTTTGATAGATTGATGGGGGCATTGTTATAATTGAAGGGTTTGGAATATATTTCGTCTGCAGGCTGAGCCTCATTGTTCCTGTGGATGTATCTTGTCGTCATTCAAGAAGAAGATCGGCTTGTGAATTTGCCCAAATCCTTTCTGGGTATTCTCAGGCCGCCTTGTCTGTCTGTTAA

mRNA sequence

ATGAACCATAATCAGCTCCGTTTGATTCGGTCAACGGTGAACTGGAAGCCACGTGGAGAATTCTTATTGAAGCGCCTTGAAGGAACAAACCAATCCAGATTTCTGAGGAGCGGAGAGGAGAGGAGTCGAGAGGGAGGCCCACGACGGAGTAGACGGGGGATCCGGCGGTTCCGCGAGGAAAGATTCCCTTTCCGTTGCGGTTGTCGAGAACGGTTTCGTTTTGTCTTTTTCACTAAGCTTTCGACAACGAACTGCGATTACTACTGCCTTTCTCCCGTCTCCACTCCGTTAAATCACGAGCTGAGCCTCATTGTTCCTGTGGATGTATCTTGTCGTCATTCAAGAAGAAGATCGGCTTGTGAATTTGCCCAAATCCTTTCTGGGTATTCTCAGGCCGCCTTGTCTGTCTGTTAA

Coding sequence (CDS)

ATGAACCATAATCAGCTCCGTTTGATTCGGTCAACGGTGAACTGGAAGCCACGTGGAGAATTCTTATTGAAGCGCCTTGAAGGAACAAACCAATCCAGATTTCTGAGGAGCGGAGAGGAGAGGAGTCGAGAGGGAGGCCCACGACGGAGTAGACGGGGGATCCGGCGGTTCCGCGAGGAAAGATTCCCTTTCCGTTGCGGTTGTCGAGAACGGTTTCGTTTTGTCTTTTTCACTAAGCTTTCGACAACGAACTGCGATTACTACTGCCTTTCTCCCGTCTCCACTCCGTTAAATCACGAGCTGAGCCTCATTGTTCCTGTGGATGTATCTTGTCGTCATTCAAGAAGAAGATCGGCTTGTGAATTTGCCCAAATCCTTTCTGGGTATTCTCAGGCCGCCTTGTCTGTCTGTTAA

Protein sequence

MNHNQLRLIRSTVNWKPRGEFLLKRLEGTNQSRFLRSGEERSREGGPRRSRRGIRRFREERFPFRCGCRERFRFVFFTKLSTTNCDYYCLSPVSTPLNHELSLIVPVDVSCRHSRRRSACEFAQILSGYSQAALSVC
Homology
[Close]
BLAST of Carg23952-RA vs. NCBI nr
Match: KGN62379.1 (hypothetical protein Csa_2G351600 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12
Identity = 59/118 (50.00%), Postives = 69/118 (58.47%), Query Frame = 0 

Query: 24  KRLEGTNQSRFLRSGEERSREGGPRRSRRGIRRFREERFPFRCGCRERFRFVFFTKL--- 83
           KR+E TNQSRF R  EE    G       G+   ++   P  CG  ERF  ++   L   
Sbjct: 50  KRIERTNQSRFKR--EEDPERGDGVDGGFGVAARKDFLSP--CGEEERFLIIYMVVLLRF 109

Query: 84  --STTNCDYYCLSPVSTPLNHELSLIVPVDVSCRHSRRRSACEFAQILSGYSQAALSV 137
              T  C     SPV+   NHELS IVPVDVSCR SRRR ACEFA+IL+GYSQAALS+
Sbjct: 110 SQGTAICT--APSPVTIQSNHELSFIVPVDVSCRLSRRRLACEFARILTGYSQAALSI 161

[Close]
BLAST of Carg23952-RA vs. TrEMBL
Match: tr|A0A0A0LN05|A0A0A0LN05_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351600 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-12
Identity = 59/118 (50.00%), Postives = 69/118 (58.47%), Query Frame = 0 

Query: 24  KRLEGTNQSRFLRSGEERSREGGPRRSRRGIRRFREERFPFRCGCRERFRFVFFTKL--- 83
           KR+E TNQSRF R  EE    G       G+   ++   P  CG  ERF  ++   L   
Sbjct: 50  KRIERTNQSRFKR--EEDPERGDGVDGGFGVAARKDFLSP--CGEEERFLIIYMVVLLRF 109

Query: 84  --STTNCDYYCLSPVSTPLNHELSLIVPVDVSCRHSRRRSACEFAQILSGYSQAALSV 137
              T  C     SPV+   NHELS IVPVDVSCR SRRR ACEFA+IL+GYSQAALS+
Sbjct: 110 SQGTAICT--APSPVTIQSNHELSFIVPVDVSCRLSRRRLACEFARILTGYSQAALSI 161

The following BLAST results are available for this feature:
BLAST of Carg23952-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62379.11.7e-1250.00hypothetical protein Csa_2G351600 [Cucumis sativus][more]
BLAST of Carg23952-RA vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg23952-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg23952-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LN05|A0A0A0LN05_CUCSA1.1e-1250.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351600 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg23952Carg23952gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg23952-RACarg23952-RA-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg23952-RA.exon.1Carg23952-RA.exon.1exon
Carg23952-RA.exon.2Carg23952-RA.exon.2exon
Carg23952-RA.exon.3Carg23952-RA.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg23952-RA.CDS.1Carg23952-RA.CDS.1CDS
Carg23952-RA.CDS.2Carg23952-RA.CDS.2CDS
Carg23952-RA.CDS.3Carg23952-RA.CDS.3CDS