Carg23321-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23321-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Threonine--tRNA ligase
Location	Cucurbita_argyrosperma_scaffold_188 : 325028 .. 327411 (+)
Sequence length	765

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGCCTATGCTGTTGTTATGCCCTCCAATTGGCCGTAAACCAGTTTCATCCTCTGCTCGCCTCCTCTCTGCAACTTCTCTCCGCCTTTTCTCATCAGCTGTACACCCAACAGCAGCGGAGACACAAGCTTCCTCGTCGCCCGCAACTGTAGCTTCAATGGCGGTGCAGCACCCCAAAGATGACGACTACCTCAGTTCCGTCATTCCTAAGCGCGTTCAGCTTTTCCAGTCGATACAGGCAAAGCTACTTGCTGACCGGTGTTCTCTTCCCTCTGATCCAATCGAGTTAGTATGACGTTAGAAACTATGGAAATGGATAGCCTATGCTTGTATTATTTGAATTCCGAATTTTACTTGGTTCTTTGCTTTTTAGGATATCCTTACCGGATGGGACGGTGAAGGAGGGTAAGAAATGGCAAACAGCGCCAATAGATGTTGCTAGAGAAATCTCGAAAAGTTTGGCTGTGAACGCTTTGATTGCGCAAGTTGATGGAGTTCTATGGGACATGAGCAGGCCGCTTGAAGATGATTGTGAGCTTAAGCTGTTCACCTTCGAAAGTGATGAAGGGCGCGACACTTTTTGGCATTCTAGTGCTCATATACTTGGACAGGTTGATAGCCCCATCTATTTTCATACACTCAATCTGAACTCATTAATTTCAATCCTAACACCGTTTCAACTGTGTTGTTTTTCCGGGTTTAGTCGCTTGAGATGGAGTATGGTTGCAAGCTTTGCATTGGACCCTGTACCACTAGAGGAGAGGTATGTGTGTGTGTGTATAGTATTAAAAGAAATGGGGGAGAAGATATTCTGTAAGTGAAAATCATCTATTATTAAGCGTGACCAAAATTTCCTTAGTAATTGCTATTTTGGTTGTCCAACGGAAAAAGTGCCAAGGTCCTTCACCTTCGATGAAGGATCCAACATCTTTCGGAGGAAAAGATCTAGAATTATTTTGTGATTGTATACTCGATCATCTTTTCTGTGGTGTAGATGATCCCTCCTTTCTAGGTAGGGGTGATCATTGATTTAGTTCCTTGGTTTTTCTTTTTTTGGCTAAATTGTGAATTGAATTGGTGACTTTTATCTTTTGGTGTATGAAATTGAACAAATGTCCAAATAAGCAAAAATAGAAAAAAGTCGAACTGGTCGGTTCGGTTTTTTAAGAAGGAAGAATGCTTTTGAATACAGTCTACAGTGTTGACTTCTCCCACATAAGCCTTTCCAGGTAGTGATCGACTTGCTGAAATAAGTTACATTATCGTAACTTGAAAGGGGATAGCTTTGGCAGTCGGGATAAACTTTTTGTTGCATTGTTCAGTTGACTTATATAGGGGTGTTAAGAGTTTCAACACCGTATGTAACTTCCCTCTATTTTTATTCTTGTAGTTTGGTTTACTCAGATTAATGGACTTTCATGACAGGGATTCTATTACGATGCTTTTTATGATGATTTATACTTGAATGATGATCACTTCAAGCAAATTGAGTCTGGTGCACTGAAGGCTGTATCGGTATTGCTCTTTCTCTTTTCTCTTGACGAGTTTACACCATTTATTTCATATAATTAAAATCTAGTTATATATATATATATATATATATATATATATATATATATATATGTATATATATATATATTACCATGTATTTACACGTGGAAGAAGGATGTTTATAACTATATAAAGAATGTCCACCACTATTTCTTTCTTTCTTTCTTTCTTTATTAGTTTTTGTTGGGAGGGTGAGGACTGGTGTTGTTTGTAATCTCAGTCTTTCACATTTGTAAAGGCCTAACAACTAAGGTTTTGGGACTAATTTTGTATGTGGAAATGCTATGCTAGAGAGTCCTCACCCTTACCCTAGTTAACTTTAGCTTCATTTGTTATAAAGAATGTAAAGATTCAGTGCTAGTAAACTAACCTTCTGGTTGTTCCAATTTTTCGGAACTAGTAGTGAATCAATAATTTGACAATTGATATCGAAATGTATAATAAGCTAGAATCATGTTGCACATATCTGTTGCTTCCTAAACTTTAGCATTGCTTGCTTATTATCTTTTTATTCACTGACTGTATTAGAGACTTTTATTTTGGCTCGAAATGAAGTACTGGAATATTTTTCCCAATAAAGCATTCAATAATCTGGTTTCATGCATATTTCATTTTTCTCAATGGATGGTTATTCATAAAAGAAAAAAAAAGATCTATGTTTCATGCATGGAACATCATCATTACAGATGATACTTCTTGTTATCAAAGGAATAATTTGATCTATTTCTTTTAAATTTTCAGGAGAGACAACCTTTTGAGCGCATTGAAGTTTCAAGGCAACAAGCTCTTGAAATGTTTTCTGACAATAAATTCAAGGCAATCGGATATCTTTAA

mRNA sequence

CTGCCTATGCTGTTGTTATGCCCTCCAATTGGCCGTAAACCAGTTTCATCCTCTGCTCGCCTCCTCTCTGCAACTTCTCTCCGCCTTTTCTCATCAGCTGTACACCCAACAGCAGCGGAGACACAAGCTTCCTCGTCGCCCGCAACTGTAGCTTCAATGGCGGTGCAGCACCCCAAAGATGACGACTACCTCAGTTCCGTCATTCCTAAGCGCGTTCAGCTTTTCCAGTCGATACAGGCAAAGCTACTTGCTGACCGGTGTTCTCTTCCCTCTGATCCAATCGAGATATCCTTACCGGATGGGACGGTGAAGGAGGGTAAGAAATGGCAAACAGCGCCAATAGATGTTGCTAGAGAAATCTCGAAAAGTTTGGCTGTGAACGCTTTGATTGCGCAAGTTGATGGAGTTCTATGGGACATGAGCAGGCCGCTTGAAGATGATTGTGAGCTTAAGCTGTTCACCTTCGAAAGTGATGAAGGGCGCGACACTTTTTGGCATTCTAGTGCTCATATACTTGGACAGTCGCTTGAGATGGAGTATGGTTGCAAGCTTTGCATTGGACCCTGTACCACTAGAGGAGAGGGATTCTATTACGATGCTTTTTATGATGATTTATACTTGAATGATGATCACTTCAAGCAAATTGAGTCTGGTGCACTGAAGGCTGTATCGGAGAGACAACCTTTTGAGCGCATTGAAGTTTCAAGGCAACAAGCTCTTGAAATGTTTTCTGACAATAAATTCAAGGCAATCGGATATCTTTAA

Coding sequence (CDS)

ATGCTGTTGTTATGCCCTCCAATTGGCCGTAAACCAGTTTCATCCTCTGCTCGCCTCCTCTCTGCAACTTCTCTCCGCCTTTTCTCATCAGCTGTACACCCAACAGCAGCGGAGACACAAGCTTCCTCGTCGCCCGCAACTGTAGCTTCAATGGCGGTGCAGCACCCCAAAGATGACGACTACCTCAGTTCCGTCATTCCTAAGCGCGTTCAGCTTTTCCAGTCGATACAGGCAAAGCTACTTGCTGACCGGTGTTCTCTTCCCTCTGATCCAATCGAGATATCCTTACCGGATGGGACGGTGAAGGAGGGTAAGAAATGGCAAACAGCGCCAATAGATGTTGCTAGAGAAATCTCGAAAAGTTTGGCTGTGAACGCTTTGATTGCGCAAGTTGATGGAGTTCTATGGGACATGAGCAGGCCGCTTGAAGATGATTGTGAGCTTAAGCTGTTCACCTTCGAAAGTGATGAAGGGCGCGACACTTTTTGGCATTCTAGTGCTCATATACTTGGACAGTCGCTTGAGATGGAGTATGGTTGCAAGCTTTGCATTGGACCCTGTACCACTAGAGGAGAGGGATTCTATTACGATGCTTTTTATGATGATTTATACTTGAATGATGATCACTTCAAGCAAATTGAGTCTGGTGCACTGAAGGCTGTATCGGAGAGACAACCTTTTGAGCGCATTGAAGTTTCAAGGCAACAAGCTCTTGAAATGTTTTCTGACAATAAATTCAAGGCAATCGGATATCTTTAA

Protein sequence

MLLLCPPIGRKPVSSSARLLSATSLRLFSSAVHPTAAETQASSSPATVASMAVQHPKDDDYLSSVIPKRVQLFQSIQAKLLADRCSLPSDPIEISLPDGTVKEGKKWQTAPIDVAREISKSLAVNALIAQVDGVLWDMSRPLEDDCELKLFTFESDEGRDTFWHSSAHILGQSLEMEYGCKLCIGPCTTRGEGFYYDAFYDDLYLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFKAIGYL

Homology

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BLAST of Carg23321-RA vs. NCBI nr
Match: XP_022932568.1 (threonine--tRNA ligase, mitochondrial 1-like [Cucurbita moschata])

HSP 1 Score: 485.3 bits (1248), Expect = 1.2e-133
Identity = 244/247 (98.79%), Postives = 245/247 (99.19%), Query Frame = 0


Query: 1   MLLLCPPIGRKPVSSSARLLSATSLRLFSSAVHPTAAETQASSSPATVASMAVQHPKDDD 60
           MLLLCPPIGRKPVSSSARLLSATSLRLFSSAVHPTAAETQASSSPAT+ASMAVQHPKDDD
Sbjct: 1   MLLLCPPIGRKPVSSSARLLSATSLRLFSSAVHPTAAETQASSSPATLASMAVQHPKDDD 60

Query: 61  YLSSVIPKRVQLFQSIQAKLLADRCSLPSDPIEISLPDGTVKEGKKWQTAPIDVAREISK 120
           YLSSVIPKRVQLFQSIQAKLLADRCSLPSDPIEISLPDGTVKEGKKWQTAPIDVAREISK
Sbjct: 61  YLSSVIPKRVQLFQSIQAKLLADRCSLPSDPIEISLPDGTVKEGKKWQTAPIDVAREISK 120

Query: 121 SLAVNALIAQVDGVLWDMSRPLEDDCELKLFTFESDEGRDTFWHSSAHILGQSLEMEYGC 180
           SLA NALIAQVDGVLWDMSRPLEDDCELKLFTFESDEGRDTFWHSSAHILGQSLEMEYGC
Sbjct: 121 SLAANALIAQVDGVLWDMSRPLEDDCELKLFTFESDEGRDTFWHSSAHILGQSLEMEYGC 180

Query: 181 KLCIGPCTTRGEGFYYDAFYDDLYLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEM 240
           KLCIGPCTTRGEGFYYDAFYDDL LNDDHFKQIESGALKAVSERQPFERIEVSRQQALEM
Sbjct: 181 KLCIGPCTTRGEGFYYDAFYDDLCLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEM 240

Query: 241 FSDNKFK 248
           FSDNKFK
Sbjct: 241 FSDNKFK 247

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BLAST of Carg23321-RA vs. NCBI nr
Match: XP_023540968.1 (threonine--tRNA ligase, mitochondrial 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 485.3 bits (1248), Expect = 1.2e-133
Identity = 244/247 (98.79%), Postives = 245/247 (99.19%), Query Frame = 0


Query: 1   MLLLCPPIGRKPVSSSARLLSATSLRLFSSAVHPTAAETQASSSPATVASMAVQHPKDDD 60
           MLLLCPPIGRKPVSSSARLLSATSLRLFSSAVHPTAAETQASSSPAT+ASMAVQHPKDDD
Sbjct: 1   MLLLCPPIGRKPVSSSARLLSATSLRLFSSAVHPTAAETQASSSPATLASMAVQHPKDDD 60

Query: 61  YLSSVIPKRVQLFQSIQAKLLADRCSLPSDPIEISLPDGTVKEGKKWQTAPIDVAREISK 120
           YLSSVIPKRVQLFQSIQAKLLADRCSLPSDPIEISLPDGTVKEGKKWQTAPIDVAREISK
Sbjct: 61  YLSSVIPKRVQLFQSIQAKLLADRCSLPSDPIEISLPDGTVKEGKKWQTAPIDVAREISK 120

Query: 121 SLAVNALIAQVDGVLWDMSRPLEDDCELKLFTFESDEGRDTFWHSSAHILGQSLEMEYGC 180
           SLA NALIAQVDGVLWDMSRPLEDDCELKLFTFESDEGRDTFWHSSAHILGQSLEMEYGC
Sbjct: 121 SLAANALIAQVDGVLWDMSRPLEDDCELKLFTFESDEGRDTFWHSSAHILGQSLEMEYGC 180

Query: 181 KLCIGPCTTRGEGFYYDAFYDDLYLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEM 240
           KLCIGPCTTRGEGFYYDAFYDDL LNDDHFKQIESGALKAVSERQPFERIEVSRQQALEM
Sbjct: 181 KLCIGPCTTRGEGFYYDAFYDDLCLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEM 240

Query: 241 FSDNKFK 248
           FSDNKFK
Sbjct: 241 FSDNKFK 247

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BLAST of Carg23321-RA vs. NCBI nr
Match: XP_022972266.1 (threonine--tRNA ligase, mitochondrial 1-like [Cucurbita maxima] >XP_022972267.1 threonine--tRNA ligase, mitochondrial 1-like [Cucurbita maxima])

HSP 1 Score: 474.2 bits (1219), Expect = 2.8e-130
Identity = 240/247 (97.17%), Postives = 242/247 (97.98%), Query Frame = 0


Query: 1   MLLLCPPIGRKPVSSSARLLSATSLRLFSSAVHPTAAETQASSSPATVASMAVQHPKDDD 60
           MLLLCPPIGRKPVSSSARLLSATSLRLFSSAVHP +AETQASSSPA +ASMAVQHPKDDD
Sbjct: 1   MLLLCPPIGRKPVSSSARLLSATSLRLFSSAVHP-SAETQASSSPAILASMAVQHPKDDD 60

Query: 61  YLSSVIPKRVQLFQSIQAKLLADRCSLPSDPIEISLPDGTVKEGKKWQTAPIDVAREISK 120
           YLSSVIPKRVQLFQSIQAKLLADRCSLPSDPIEISLPDGTVKEGKKWQTAPIDVAREISK
Sbjct: 61  YLSSVIPKRVQLFQSIQAKLLADRCSLPSDPIEISLPDGTVKEGKKWQTAPIDVAREISK 120

Query: 121 SLAVNALIAQVDGVLWDMSRPLEDDCELKLFTFESDEGRDTFWHSSAHILGQSLEMEYGC 180
           SLA NALIAQVDGVLWDMSRPLEDDCELKLFTFESDEGRDTFWHSSAHILGQSLEMEYGC
Sbjct: 121 SLAANALIAQVDGVLWDMSRPLEDDCELKLFTFESDEGRDTFWHSSAHILGQSLEMEYGC 180

Query: 181 KLCIGPCTTRGEGFYYDAFYDDLYLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEM 240
           KLCIGPCTTRGEGFYYDAFYDDL LNDDHFKQIESGALKA SERQPFERIEVSRQQALEM
Sbjct: 181 KLCIGPCTTRGEGFYYDAFYDDLCLNDDHFKQIESGALKAASERQPFERIEVSRQQALEM 240

Query: 241 FSDNKFK 248
           FSDNKFK
Sbjct: 241 FSDNKFK 246

[Close]

BLAST of Carg23321-RA vs. NCBI nr
Match: XP_023520743.1 (threonine--tRNA ligase, mitochondrial 1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023520744.1 threonine--tRNA ligase, mitochondrial 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 406.8 bits (1044), Expect = 5.5e-110
Identity = 208/246 (84.55%), Postives = 216/246 (87.80%), Query Frame = 0


Query: 2   LLLCPPIGRKPVSSSARLLSATSLRLFSSAVHPTAAETQASSSPATVASMAVQHPKDDDY 61
           L LC  IGRK VSSS  LLS TSLRL SS   PTA          T ASMA QHPKD+ Y
Sbjct: 4   LCLCSRIGRKAVSSSTSLLSTTSLRLCSSVAQPTA---------GTQASMAAQHPKDEHY 63

Query: 62  LSSVIPKRVQLFQSIQAKLLADRCSLPSDPIEISLPDGTVKEGKKWQTAPIDVAREISKS 121
           L+SVIPKR+QLFQSIQAKLLADR SLPSDPIEI+LPDGTVK GKKWQTAPIDVAREISKS
Sbjct: 64  LNSVIPKRIQLFQSIQAKLLADRRSLPSDPIEITLPDGTVKAGKKWQTAPIDVAREISKS 123

Query: 122 LAVNALIAQVDGVLWDMSRPLEDDCELKLFTFESDEGRDTFWHSSAHILGQSLEMEYGCK 181
           LA NALIAQVDGVLWDM RPLE DCELKLFTFESDEGRDTFWHSSAHILGQSLEMEYGCK
Sbjct: 124 LAANALIAQVDGVLWDMCRPLEGDCELKLFTFESDEGRDTFWHSSAHILGQSLEMEYGCK 183

Query: 182 LCIGPCTTRGEGFYYDAFYDDLYLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMF 241
           LCIGPCTTRGEGFYYDAFYDDL LNDDHFK+IESGALKAVSE+QPFERIEVSR+QALE+F
Sbjct: 184 LCIGPCTTRGEGFYYDAFYDDLGLNDDHFKKIESGALKAVSEKQPFERIEVSREQALEIF 240

Query: 242 SDNKFK 248
           SDNKFK
Sbjct: 244 SDNKFK 240

[Close]

BLAST of Carg23321-RA vs. NCBI nr
Match: XP_022934650.1 (threonine--tRNA ligase, mitochondrial 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 405.2 bits (1040), Expect = 1.6e-109
Identity = 207/246 (84.15%), Postives = 215/246 (87.40%), Query Frame = 0


Query: 2   LLLCPPIGRKPVSSSARLLSATSLRLFSSAVHPTAAETQASSSPATVASMAVQHPKDDDY 61
           L LC  IGRK VSSS  LLS TSLRL SS   PTA          T ASMA QHPKD+ Y
Sbjct: 4   LCLCSRIGRKAVSSSTSLLSTTSLRLCSSVAQPTA---------GTQASMAAQHPKDEHY 63

Query: 62  LSSVIPKRVQLFQSIQAKLLADRCSLPSDPIEISLPDGTVKEGKKWQTAPIDVAREISKS 121
           L+SVIPKR+QLFQSIQAKLLADR SLPSDPIEI+LPDGTVK GKKWQTAPIDVAREISKS
Sbjct: 64  LNSVIPKRIQLFQSIQAKLLADRRSLPSDPIEITLPDGTVKAGKKWQTAPIDVAREISKS 123

Query: 122 LAVNALIAQVDGVLWDMSRPLEDDCELKLFTFESDEGRDTFWHSSAHILGQSLEMEYGCK 181
           LA NALIAQVDG LWDM RPLE DCELKLFTFESDEGRDTFWHSSAHILGQSLEMEYGCK
Sbjct: 124 LAANALIAQVDGALWDMCRPLEGDCELKLFTFESDEGRDTFWHSSAHILGQSLEMEYGCK 183

Query: 182 LCIGPCTTRGEGFYYDAFYDDLYLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMF 241
           LCIGPCTTRGEGFYYDAFYDDL LNDDHFK+IESGALKAVSE+QPFERIEVSR+QALE+F
Sbjct: 184 LCIGPCTTRGEGFYYDAFYDDLGLNDDHFKKIESGALKAVSEKQPFERIEVSREQALEIF 240

Query: 242 SDNKFK 248
           SDNKFK
Sbjct: 244 SDNKFK 240

[Close]

BLAST of Carg23321-RA vs. TAIR10
Match: AT5G26830.1 (Threonyl-tRNA synthetase)

HSP 1 Score: 302.4 bits (773), Expect = 2.7e-82
Identity = 146/228 (64.04%), Postives = 184/228 (80.70%), Query Frame = 0


Query: 20  LSATSLRLFSSAVHPTAAETQASSSPATVASMAVQHPKDDDYLSSVIPKRVQLFQSIQAK 79
           L+A S+R F+++   ++    +SSS  TV +MA  HPKD+ YLS+VIPKR++LF+ IQA 
Sbjct: 5   LTARSIRRFTTS--SSSLPLLSSSSFCTVPTMAANHPKDEAYLSAVIPKRIKLFEQIQAN 64

Query: 80  LLADRCSLPSDPIEISLPDGTVKEGKKWQTAPIDVAREISKSLAVNALIAQVDGVLWDMS 139
            L +  SLP DPI+++LPDG VKEGKKW+T P+D+A +ISK LA +ALI+ VD VLWDM+
Sbjct: 65  QLENLKSLPHDPIKVTLPDGNVKEGKKWETTPMDIAAQISKGLANSALISAVDDVLWDMN 124

Query: 140 RPLEDDCELKLFTFESDEGRDTFWHSSAHILGQSLEMEYGCKLCIGPCTTRGEGFYYDAF 199
           RPLE DC+L+LF F+SD+GRDT WHSSAHILGQ+LE EYGC+LCIGPCTTRGEGFYYD F
Sbjct: 125 RPLEGDCKLELFKFDSDKGRDTLWHSSAHILGQALEQEYGCQLCIGPCTTRGEGFYYDGF 184

Query: 200 YDDLYLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK 248
           Y +L L+D+HF  IE+GA KA  E QPFERIEV++ QALEMFS+N FK
Sbjct: 185 YGELGLSDNHFPSIEAGAAKAAKEAQPFERIEVTKDQALEMFSENNFK 230

[Close]

BLAST of Carg23321-RA vs. TAIR10
Match: AT1G17960.1 (Threonyl-tRNA synthetase)

HSP 1 Score: 225.7 bits (574), Expect = 3.2e-59
Identity = 104/163 (63.80%), Postives = 134/163 (82.21%), Query Frame = 0


Query: 55  HPKDDDYLSSVIPKRVQLFQSIQAKLLADRCSLPSDPIEIS-LPDGTVKEGKKWQTAPID 114
           HPKD+ YLSSVIPKR++LF+ IQA+ L    S P DPI+I+ LPDG  KEG++W+T+P+D
Sbjct: 6   HPKDEAYLSSVIPKRIRLFEEIQAEQLEQLQSRPHDPIKITLLPDGIEKEGRRWETSPMD 65

Query: 115 VAREISKSLAVNALIAQVDGVLWDMSRPLEDDCELKLFTFESDEGRDTFWHSSAHILGQS 174
           +A +ISK LA +AL++ V+ VLWDM+RPLE DC L++F F+SD+GR+TFWHSSAHILGQ+
Sbjct: 66  IAVQISKGLAKSALVSSVNHVLWDMNRPLEGDCSLEIFGFDSDQGRNTFWHSSAHILGQA 125

Query: 175 LEMEYGCKLCIGPCTTRGEGFYYDA-FYDDLYLNDDHFKQIES 216
           LE EYGCKLCIGPC  R EGFYYD+ +Y +L LND+HF  IE+
Sbjct: 126 LEQEYGCKLCIGPCEPRDEGFYYDSLYYGELGLNDNHFPNIEA 168

[Close]

BLAST of Carg23321-RA vs. Swiss-Prot
Match: sp|O04630|SYTM1_ARATH (Threonine--tRNA ligase, mitochondrial 1 OS=Arabidopsis thaliana OX=3702 GN=THRRS PE=1 SV=3)

HSP 1 Score: 302.4 bits (773), Expect = 4.8e-81
Identity = 146/228 (64.04%), Postives = 184/228 (80.70%), Query Frame = 0


Query: 20  LSATSLRLFSSAVHPTAAETQASSSPATVASMAVQHPKDDDYLSSVIPKRVQLFQSIQAK 79
           L+A S+R F+++   ++    +SSS  TV +MA  HPKD+ YLS+VIPKR++LF+ IQA 
Sbjct: 5   LTARSIRRFTTS--SSSLPLLSSSSFCTVPTMAANHPKDEAYLSAVIPKRIKLFEQIQAN 64

Query: 80  LLADRCSLPSDPIEISLPDGTVKEGKKWQTAPIDVAREISKSLAVNALIAQVDGVLWDMS 139
            L +  SLP DPI+++LPDG VKEGKKW+T P+D+A +ISK LA +ALI+ VD VLWDM+
Sbjct: 65  QLENLKSLPHDPIKVTLPDGNVKEGKKWETTPMDIAAQISKGLANSALISAVDDVLWDMN 124

Query: 140 RPLEDDCELKLFTFESDEGRDTFWHSSAHILGQSLEMEYGCKLCIGPCTTRGEGFYYDAF 199
           RPLE DC+L+LF F+SD+GRDT WHSSAHILGQ+LE EYGC+LCIGPCTTRGEGFYYD F
Sbjct: 125 RPLEGDCKLELFKFDSDKGRDTLWHSSAHILGQALEQEYGCQLCIGPCTTRGEGFYYDGF 184

Query: 200 YDDLYLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK 248
           Y +L L+D+HF  IE+GA KA  E QPFERIEV++ QALEMFS+N FK
Sbjct: 185 YGELGLSDNHFPSIEAGAAKAAKEAQPFERIEVTKDQALEMFSENNFK 230

[Close]

BLAST of Carg23321-RA vs. Swiss-Prot
Match: sp|Q8GZ45|SYTC_ARATH (Probable threonine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=At1g17960 PE=2 SV=2)

HSP 1 Score: 225.7 bits (574), Expect = 5.7e-58
Identity = 104/163 (63.80%), Postives = 134/163 (82.21%), Query Frame = 0


Query: 55  HPKDDDYLSSVIPKRVQLFQSIQAKLLADRCSLPSDPIEIS-LPDGTVKEGKKWQTAPID 114
           HPKD+ YLSSVIPKR++LF+ IQA+ L    S P DPI+I+ LPDG  KEG++W+T+P+D
Sbjct: 6   HPKDEAYLSSVIPKRIRLFEEIQAEQLEQLQSRPHDPIKITLLPDGIEKEGRRWETSPMD 65

Query: 115 VAREISKSLAVNALIAQVDGVLWDMSRPLEDDCELKLFTFESDEGRDTFWHSSAHILGQS 174
           +A +ISK LA +AL++ V+ VLWDM+RPLE DC L++F F+SD+GR+TFWHSSAHILGQ+
Sbjct: 66  IAVQISKGLAKSALVSSVNHVLWDMNRPLEGDCSLEIFGFDSDQGRNTFWHSSAHILGQA 125

Query: 175 LEMEYGCKLCIGPCTTRGEGFYYDA-FYDDLYLNDDHFKQIES 216
           LE EYGCKLCIGPC  R EGFYYD+ +Y +L LND+HF  IE+
Sbjct: 126 LEQEYGCKLCIGPCEPRDEGFYYDSLYYGELGLNDNHFPNIEA 168

[Close]

BLAST of Carg23321-RA vs. Swiss-Prot
Match: sp|Q54J66|SYTC1_DICDI (Probable threonine--tRNA ligase 1, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=thrS1 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.5e-42
Identity = 87/183 (47.54%), Postives = 126/183 (68.85%), Query Frame = 0


Query: 66  IPKRVQLFQSIQAKLLADRCSLPSDPIEISLPDGTVKEGKKWQTAPIDVAREISKSLAVN 125
           + +R+++++S++AK L     +  +PI ++LPDG V  G K +T P D+A+ IS+ LA +
Sbjct: 50  VKERIEIWESLKAKHLESLKDMKEEPINVTLPDGKVVAGIKNKTTPYDIAKGISRGLADS 109

Query: 126 ALIAQVDG-VLWDMSRPLEDDCELKLFTFESDEGRDTFWHSSAHILGQSLEMEYGCKLCI 185
            + ++V+G  +WD+SRPLE DC L+L  F+S+EG+ TFWHSSAHILGQ++E  YG +LCI
Sbjct: 110 IVSSKVNGEQIWDISRPLEADCNLQLCKFDSEEGKKTFWHSSAHILGQAMERIYGGQLCI 169

Query: 186 GPCTTRGEGFYYDAFYDDLYLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDN 245
           GP T+  EGFYYD    D  ++ + +K I   A K V E+QPFER+ V R  AL MF  N
Sbjct: 170 GPATS--EGFYYDMAMGDKIVSAEDYKLINEVAQKIVQEKQPFERLAVPRDIALTMFKFN 229

Query: 246 KFK 248
           K+K
Sbjct: 230 KYK 230

[Close]

BLAST of Carg23321-RA vs. Swiss-Prot
Match: sp|P52709|SYTC_CAEEL (Threonine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=tars-1 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.9e-41
Identity = 80/192 (41.67%), Postives = 126/192 (65.62%), Query Frame = 0


Query: 56  PKDDDYLSSVIPKRVQLFQSIQAKLLADRCSLPSDPIEISLPDGTVKEGKKWQTAPIDVA 115
           P D     + I +R++L+  ++A+  A+  +  S+PI+I+LPDG + EGK W+T P ++A
Sbjct: 46  PTDMAPWPAFIEERIKLWDKLKAEYDAEIAAKESEPIQITLPDGKIHEGKTWRTTPFEIA 105

Query: 116 REISKSLAVNALIAQVDGVLWDMSRPLEDDCELKLFTFESDEGRDTFWHSSAHILGQSLE 175
             ISK LA  A+IA+V+G +WD+ RP E + +L+L  F+ DE +  FWHSSAH+LG+++E
Sbjct: 106 ERISKGLAEAAVIAKVNGAVWDLDRPFEGNAKLELLKFDDDEAKQVFWHSSAHVLGEAME 165

Query: 176 MEYGCKLCIGPCTTRGEGFYYDAFYDDLYLNDDHFKQIESGALKAVSERQPFERIEVSRQ 235
              G  LC GP     EGFYYD ++++  +  D F +I+     AV ++Q FER+E++++
Sbjct: 166 RYCGGHLCYGPPIQ--EGFYYDMWHENRTICPDDFPKIDQIVKAAVKDKQKFERLEMTKE 225

Query: 236 QALEMFSDNKFK 248
             LEMF  N+FK
Sbjct: 226 DLLEMFKYNEFK 235

[Close]

BLAST of Carg23321-RA vs. Swiss-Prot
Match: sp|P87144|SYTC_SCHPO (Threonine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ths1 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.4e-40
Identity = 86/192 (44.79%), Postives = 120/192 (62.50%), Query Frame = 0


Query: 60  DYLSSVIP---KRVQLFQSIQAKLLADRCSLPSDPIEISLPDGTVKEGKKWQTAPIDVAR 119
           D LS  IP    R+ LF  +Q +      + P + I+I+LPDG V +G  W+T PI +A 
Sbjct: 14  DNLSLEIPFIQHRLDLFDKLQKEYKESLATKPREEIDITLPDGKVIKGTSWETTPISIAA 73

Query: 120 EISKSLAVNALIAQVDGVLWDMSRPLEDDCELKLFTFESDEGRDTFWHSSAHILGQSLEM 179
            ISK LA    +A V+G  WD++RPLE  C LKL  F   EG+  FWHSSAHILG++ E+
Sbjct: 74  SISKGLADRVTVAIVNGEPWDLTRPLEASCTLKLCDFNDPEGKRVFWHSSAHILGEATEL 133

Query: 180 EYGCKLCIGPCTTRGEGFYYDAFYDD-LYLNDDHFKQIESGALKAVSERQPFERIEVSRQ 239
            + C LCIGP T   EGF+Y+   D+   + +D +  IES A +A+ ++QPFER+ +S++
Sbjct: 134 SFHCHLCIGPPT--DEGFFYEMGIDNGRVITNDDYSSIESYAKQAIKQKQPFERLVISKE 193

Query: 240 QALEMFSDNKFK 248
             LEMF  NK+K
Sbjct: 194 GLLEMFRYNKYK 203

[Close]

BLAST of Carg23321-RA vs. TrEMBL
Match: tr|A0A1S3CDY8|A0A1S3CDY8_CUCME (threonine--tRNA ligase, mitochondrial 1 OS=Cucumis melo OX=3656 GN=LOC103499347 PE=3 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 1.0e-99
Identity = 184/238 (77.31%), Postives = 206/238 (86.55%), Query Frame = 0


Query: 10  RKPVSSSARLLSATSLRLFSSAVHPTAAETQASSSPATVASMAVQHPKDDDYLSSVIPKR 69
           RK V  S   LS+T LRL  + +H T A           A MA +HPKD+ YLS+ IPKR
Sbjct: 19  RKTVPYSNHFLSSTFLRLLHNQLHNTQA-----------AFMAAKHPKDETYLSTTIPKR 78

Query: 70  VQLFQSIQAKLLADRCSLPSDPIEISLPDGTVKEGKKWQTAPIDVAREISKSLAVNALIA 129
           +QLFQSIQA+LLADR SLPS PI+I+LPDGT+KEG+KW+T P+DVA+EISKSLA NALIA
Sbjct: 79  IQLFQSIQAQLLADRSSLPSHPIKITLPDGTMKEGQKWKTTPLDVAKEISKSLAANALIA 138

Query: 130 QVDGVLWDMSRPLEDDCELKLFTFESDEGRDTFWHSSAHILGQSLEMEYGCKLCIGPCTT 189
           QVDGVLWDMSRPLE+DCELKLFTF+SDEGRDTFWHSSAHILGQSLEMEYGCKLCIGPCTT
Sbjct: 139 QVDGVLWDMSRPLENDCELKLFTFDSDEGRDTFWHSSAHILGQSLEMEYGCKLCIGPCTT 198

Query: 190 RGEGFYYDAFYDDLYLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK 248
           RGEGFYYDAFYDDL LNDDHFKQIE+GA+KAVSE+QPFER+EV+RQQALEMFSDNKFK
Sbjct: 199 RGEGFYYDAFYDDLGLNDDHFKQIETGAMKAVSEKQPFERVEVTRQQALEMFSDNKFK 245

[Close]

BLAST of Carg23321-RA vs. TrEMBL
Match: tr|A0A0A0KJG3|A0A0A0KJG3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G080790 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 1.4e-98
Identity = 184/237 (77.64%), Postives = 205/237 (86.50%), Query Frame = 0


Query: 11  KPVSSSARLLSATSLRLFSSAVHPTAAETQASSSPATVASMAVQHPKDDDYLSSVIPKRV 70
           K V  S   LS++ LRL  + +H T A           A MA +HPKD+ YLS+ IPKR+
Sbjct: 20  KTVPYSNHFLSSSFLRLLHNQLHNTQA-----------AFMAAKHPKDEAYLSTTIPKRI 79

Query: 71  QLFQSIQAKLLADRCSLPSDPIEISLPDGTVKEGKKWQTAPIDVAREISKSLAVNALIAQ 130
           QLFQSIQA++LADR SLPS  I+I+LPDGT+KEG+KW+TAP+DVA+EISKSLA NALIAQ
Sbjct: 80  QLFQSIQAQILADRSSLPSHQIKITLPDGTMKEGQKWKTAPLDVAKEISKSLAANALIAQ 139

Query: 131 VDGVLWDMSRPLEDDCELKLFTFESDEGRDTFWHSSAHILGQSLEMEYGCKLCIGPCTTR 190
           VDGVLWDMSRPLE+DCELKLFTF+SDEGRDTFWHSSAHILGQSLEMEYGCKLCIGPCTTR
Sbjct: 140 VDGVLWDMSRPLENDCELKLFTFDSDEGRDTFWHSSAHILGQSLEMEYGCKLCIGPCTTR 199

Query: 191 GEGFYYDAFYDDLYLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK 248
           GEGFYYDAFYDDL LNDDHFKQIESGALKAVSE+QPFERIEV+RQQALEMFSDNKFK
Sbjct: 200 GEGFYYDAFYDDLGLNDDHFKQIESGALKAVSEKQPFERIEVTRQQALEMFSDNKFK 245

[Close]

BLAST of Carg23321-RA vs. TrEMBL
Match: tr|A0A2P4GQN7|A0A2P4GQN7_QUESU (Threonine--trna ligase, mitochondrial 1 OS=Quercus suber OX=58331 GN=CFP56_57203 PE=3 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 2.0e-92
Identity = 174/233 (74.68%), Postives = 195/233 (83.69%), Query Frame = 0


Query: 15  SSARLLSATSLRLFSSAVHPTAAETQASSSPATVASMAVQHPKDDDYLSSVIPKRVQLFQ 74
           S  R   ++ LR  SSA    +   +  SS  T    +  HPKD+ YL+ VIPKR+QLFQ
Sbjct: 5   SKLRAALSSHLRRHSSAF---SLPLRRFSSTVTATMASNNHPKDESYLNQVIPKRIQLFQ 64

Query: 75  SIQAKLLADRCSLPSDPIEISLPDGTVKEGKKWQTAPIDVAREISKSLAVNALIAQVDGV 134
           SIQAKLL +R SL SDPI+I+LPDGTVKEGKKW T+P+DVAREISKSLA NALI++V+GV
Sbjct: 65  SIQAKLLTERLSLSSDPIKITLPDGTVKEGKKWVTSPLDVAREISKSLAANALISEVNGV 124

Query: 135 LWDMSRPLEDDCELKLFTFESDEGRDTFWHSSAHILGQSLEMEYGCKLCIGPCTTRGEGF 194
           LWDMSRPLE DCELKLFTFESDEGRDTFWHSSAHILGQSLE EYGCKLCIGPCTTRGEGF
Sbjct: 125 LWDMSRPLESDCELKLFTFESDEGRDTFWHSSAHILGQSLEQEYGCKLCIGPCTTRGEGF 184

Query: 195 YYDAFYDDLYLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK 248
           YYDAFY DL LNDDHFK+IESGA+KAV+E+QPFERIEVSR +ALEMFSDN FK
Sbjct: 185 YYDAFYGDLGLNDDHFKKIESGAMKAVTEKQPFERIEVSRDEALEMFSDNNFK 234

[Close]

BLAST of Carg23321-RA vs. TrEMBL
Match: tr|A0A2P4IPX1|A0A2P4IPX1_QUESU (Threonine--trna ligase, mitochondrial 1 OS=Quercus suber OX=58331 GN=CFP56_23004 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 5.9e-92
Identity = 163/193 (84.46%), Postives = 179/193 (92.75%), Query Frame = 0


Query: 55  HPKDDDYLSSVIPKRVQLFQSIQAKLLADRCSLPSDPIEISLPDGTVKEGKKWQTAPIDV 114
           HPKD+ YL+ VIPKR+QLFQSIQAKLL +R SL SDPI+I+LPDGTVKEGKKW T+P+DV
Sbjct: 6   HPKDESYLNQVIPKRIQLFQSIQAKLLTERLSLSSDPIKITLPDGTVKEGKKWVTSPLDV 65

Query: 115 AREISKSLAVNALIAQVDGVLWDMSRPLEDDCELKLFTFESDEGRDTFWHSSAHILGQSL 174
           AREISKSLA NALI++V+GVLWDMSRPLE DCELKLFTFESDEGRDTFWHSSAHILGQSL
Sbjct: 66  AREISKSLAANALISEVNGVLWDMSRPLESDCELKLFTFESDEGRDTFWHSSAHILGQSL 125

Query: 175 EMEYGCKLCIGPCTTRGEGFYYDAFYDDLYLNDDHFKQIESGALKAVSERQPFERIEVSR 234
           E EYGCKLCIGPCTTRGEGFYYDAFY DL LNDDHFK+IESGA+ AV+E+QPFERIEVSR
Sbjct: 126 EQEYGCKLCIGPCTTRGEGFYYDAFYGDLGLNDDHFKKIESGAMNAVTEKQPFERIEVSR 185

Query: 235 QQALEMFSDNKFK 248
            +ALEMFSDN FK
Sbjct: 186 DEALEMFSDNNFK 198

[Close]

BLAST of Carg23321-RA vs. TrEMBL
Match: tr|A0A2I4GX76|A0A2I4GX76_9ROSI (threonine--tRNA ligase, mitochondrial 1-like OS=Juglans regia OX=51240 GN=LOC109011668 PE=3 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 1.9e-90
Identity = 169/238 (71.01%), Postives = 200/238 (84.03%), Query Frame = 0


Query: 18  RLLSATS--LRLFSSAVHPT------AAETQASSSPATVASMAVQHPKDDDYLSSVIPKR 77
           RL +A S   R FSS+  P+      +     SS+P  +ASMA  HPKD+ YL  VIPKR
Sbjct: 5   RLRAALSFQFRRFSSSSTPSPFPYIHSLSRHFSSTPPPIASMASNHPKDEAYLGKVIPKR 64

Query: 78  VQLFQSIQAKLLADRCSLPSDPIEISLPDGTVKEGKKWQTAPIDVAREISKSLAVNALIA 137
           +QLFQSIQ++    R SLP+DPI+I+LPDGTVKEGKKW T+P+DVA+EISKSLA NALI+
Sbjct: 65  IQLFQSIQSRQHTQRESLPADPIKITLPDGTVKEGKKWVTSPMDVAKEISKSLAANALIS 124

Query: 138 QVDGVLWDMSRPLEDDCELKLFTFESDEGRDTFWHSSAHILGQSLEMEYGCKLCIGPCTT 197
           QV+GVLWDM+RPLEDDCELKLFTF+SDEGRDTFWHSSAHILG+++E EYGCKLCIGPCTT
Sbjct: 125 QVNGVLWDMTRPLEDDCELKLFTFDSDEGRDTFWHSSAHILGEAVEQEYGCKLCIGPCTT 184

Query: 198 RGEGFYYDAFYDDLYLNDDHFKQIESGALKAVSERQPFERIEVSRQQALEMFSDNKFK 248
           RGEGFYYDAFY DL LNDDHFKQIESGA+KAV+++QPFERIEVS+ +AL+MFS+N FK
Sbjct: 185 RGEGFYYDAFYGDLGLNDDHFKQIESGAMKAVADKQPFERIEVSKDEALQMFSENHFK 242

The following BLAST results are available for this feature:

BLAST of Carg23321-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932568.1	1.2e-133	98.79	threonine--tRNA ligase, mitochondrial 1-like [Cucurbita moschata]	[more]
XP_023540968.1	1.2e-133	98.79	threonine--tRNA ligase, mitochondrial 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022972266.1	2.8e-130	97.17	threonine--tRNA ligase, mitochondrial 1-like [Cucurbita maxima] >XP_022972267.1 ...	[more]
XP_023520743.1	5.5e-110	84.55	threonine--tRNA ligase, mitochondrial 1-like isoform X1 [Cucurbita pepo subsp. p...	[more]
XP_022934650.1	1.6e-109	84.15	threonine--tRNA ligase, mitochondrial 1-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Carg23321-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G26830.1	2.7e-82	64.04	Threonyl-tRNA synthetase	[more]
AT1G17960.1	3.2e-59	63.80	Threonyl-tRNA synthetase	[more]

BLAST of Carg23321-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O04630\|SYTM1_ARATH	4.8e-81	64.04	Threonine--tRNA ligase, mitochondrial 1 OS=Arabidopsis thaliana OX=3702 GN=THRRS...	[more]
sp\|Q8GZ45\|SYTC_ARATH	5.7e-58	63.80	Probable threonine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
sp\|Q54J66\|SYTC1_DICDI	1.5e-42	47.54	Probable threonine--tRNA ligase 1, cytoplasmic OS=Dictyostelium discoideum OX=44...	[more]
sp\|P52709\|SYTC_CAEEL	4.9e-41	41.67	Threonine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=tars-1 ...	[more]
sp\|P87144\|SYTC_SCHPO	2.4e-40	44.79	Threonine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / A...	[more]

BLAST of Carg23321-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CDY8\|A0A1S3CDY8_CUCME	1.0e-99	77.31	threonine--tRNA ligase, mitochondrial 1 OS=Cucumis melo OX=3656 GN=LOC103499347 ...	[more]
tr\|A0A0A0KJG3\|A0A0A0KJG3_CUCSA	1.4e-98	77.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G080790 PE=4 SV=1	[more]
tr\|A0A2P4GQN7\|A0A2P4GQN7_QUESU	2.0e-92	74.68	Threonine--trna ligase, mitochondrial 1 OS=Quercus suber OX=58331 GN=CFP56_57203...	[more]
tr\|A0A2P4IPX1\|A0A2P4IPX1_QUESU	5.9e-92	84.46	Threonine--trna ligase, mitochondrial 1 OS=Quercus suber OX=58331 GN=CFP56_23004...	[more]
tr\|A0A2I4GX76\|A0A2I4GX76_9ROSI	1.9e-90	71.01	threonine--tRNA ligase, mitochondrial 1-like OS=Juglans regia OX=51240 GN=LOC109...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0004829	threonine-tRNA ligase activity
GO:0005524	ATP binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **Biological Process**
Term	Definition
GO:0006435	threonyl-tRNA aminoacylation

Vocabulary: **INTERPRO**
Term	Definition
IPR012676	TGS-like
IPR018163	Thr/Ala-tRNA-synth_IIc_edit
IPR002320	Thr-tRNA-ligase_IIa
IPR004095	TGS
IPR012675	Beta-grasp_dom_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006435	threonyl-tRNA aminoacylation
biological_process	GO:0006544	glycine metabolic process
biological_process	GO:0006563	L-serine metabolic process
biological_process	GO:0006566	threonine metabolic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0004829	threonine-tRNA ligase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg23321	Carg23321	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg23321-RA	Carg23321-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg23321-RA.exon.1	Carg23321-RA.exon.1	exon
Carg23321-RA.exon.2	Carg23321-RA.exon.2	exon
Carg23321-RA.exon.3	Carg23321-RA.exon.3	exon
Carg23321-RA.exon.4	Carg23321-RA.exon.4	exon
Carg23321-RA.exon.5	Carg23321-RA.exon.5	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg23321-RA.five_prime_UTR.1	Carg23321-RA.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg23321-RA.CDS.1	Carg23321-RA.CDS.1	CDS
Carg23321-RA.CDS.2	Carg23321-RA.CDS.2	CDS
Carg23321-RA.CDS.3	Carg23321-RA.CDS.3	CDS
Carg23321-RA.CDS.4	Carg23321-RA.CDS.4	CDS
Carg23321-RA.CDS.5	Carg23321-RA.CDS.5	CDS

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012675	Beta-grasp domain superfamily	GENE3D	G3DSA:3.10.20.30		coord: 90..151 e-value: 2.9E-27 score: 96.6
IPR004095	TGS	PFAM	PF02824	TGS	coord: 92..152 e-value: 1.4E-15 score: 57.0
None	No IPR available	GENE3D	G3DSA:3.30.980.10		coord: 155..250 e-value: 1.4E-21 score: 79.1
None	No IPR available	PANTHER	PTHR11451:SF46	FI05224P	coord: 52..248
None	No IPR available	CDD	cd01667	TGS_ThrRS_N	coord: 92..153 e-value: 1.55194E-24 score: 92.565
IPR002320	Threonine-tRNA ligase, class IIa	PANTHER	PTHR11451	TRNA SYNTHETASE-RELATED	coord: 52..248
IPR018163	Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily	SUPERFAMILY	SSF55186	ThrRS/AlaRS common domain	coord: 153..247
IPR012676	TGS-like	SUPERFAMILY	SSF81271	TGS-like	coord: 92..153