Carg23008-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGTTAATCTTCATCTCCCCTCTTCCCACTCTCGCGCCTCATTGGTTTCATCGTCCGCCGTCCACCCGCCACCTGCAACGCCTCCTCCTTCCTTCTCCGTTGGGCGGAGTTTCCTAAGCTGTACCTTTCTTTTACTTCCGACGAATCAATTTCACCTGCCCTCTCGAATCAGATTCGCTTCTTTTCAGCTAATACCCAATGGCTTCCTCGCTCGCTTCAGCTTCAGCTGCTTCCGCAGTGGCCAAATCTCCTTGCACGGCCATGGCTCGCCGCGATATCAACCACAAGAACTCTCATTGCGCGCTCTCTTTTCGGCTCCCTCACAAGCCCAAACTCCGAATCTTCACCAGGGTATGCACCAATTCATCTCCCTCGTTGAATGATAAGTAGAATTTCTGTCCTATTTGTGCTAATTGTGGTTATTTTATGTGTTGCGCTTCTGATTTACGATTATTCCGCACTGTGATCTTCTGCGTTGCTTTTGAATTCGTTGGTGGCTACATTTGCACTTCGTGATTGGAAAAACAAACTGGAAGAATGTGTTTGGAGGGTTCTTTTAAATGAAATTTTTTGACTGTTTTATTGGTATAGAGATTTTAAGGAGTGAAAGAGATAACGTTAATTGCGGTGTAAACTGGGTACAAATTGTTAGGTATCACATATCCCCACAATGGTATGATATTGTCCACTTCGAGCATAAATTCTCATGGATTTGCTTTTGGTTTCCCCAAAAGGCCTCATACCAACGAAGATAGTATTCCTTACTTATAAACTCATGATCTTACTCTCAATTAGTCAATGTGAGACTGCTTCTCTCAATAATTCTCAACAATCCTTCACTCAAACAAAGTACACAATAGAGCCCCCCGGCCTATGGAGCCCTCGAACAGTCTCCCCTTAATTGAGGCTCAACTCCTTTCTCTAGAGCCCTCGAACAAAGTACAACATTTGTTCTACACTTTAGTCACTTTTTGACTACACTTTCGTGGCTCACAACTTCTTTGTTCGATATTTGAGAATTTTATTTACATGTCTAAGTTAAGGACATGACTTTGATATCATGTTAGGAATCACAAATCTCCACAATAGTATGATATTGTCCACTTTGAGCATAAACTCTCGTGGCTTTGTTTTTTGTTTCCCCAAAAGGTCTCTTTAATGAAGATGTATTCCTTACTTATGAACTCATGTTCATCTATGTAATTAGCCAATTTGGGACTCCCTCCTAACAATCTTAAACAATGGACATATTAACTTTGTCACCATTAAAGAATGTGATTTAATCATTATGTTGCAGGGTGTGCAGCCTGTTCGTAAGCATCTAACTCCTGTACAGGCACAGTTGAATGAGGTATGTATGCTCACATCAAATTACTATATCAAATAGGATTTTATTTTGTTGAAGTATTAACTCTTTCCTAACGTGCTGTTCTTGAAGTCGTCTATTTCATTGAAGGATCCTGTTGATGCACCTAATGCTGCAAAAGTTTCATCTGAATCTGATGTTTTAGCATCAGATGGAAGTGCCAAACCATTGAGTGATCAATCTTCTAAAGTTTTGGCAACGGAAGAGTCAATCTCTGAGTTCATTACTCAAGTTTCAAGCCTTATCAAGTTAGCTAGCTCAATCTGTGACCTTTTCCTCTAAAATAACCTACACATGGATGTGCTATAACATTTTTTTACCTGCTTGCAGACTGGTTGATTCCAGAGATATTGTAGAGTTGCAACTGAAACAGCTCGACTGTGAAGTGATAATCCGAAAAAAGGAGGCCTTACCACAACCGCCACCTCCTGCTGCCATTCCTATGCCGTATGCACCCCCACCTTCAGTAGCACAGTCAGTTCCTCCCCCTGTGCCTGCTGCACTGCCAGCGCCCGCTTCTCCTGTTTCAAGCCTGCCATCTTCACCTCCTGCTGCTAAGTCGGCCAAGTCCTCCCTTCCACCTCTTAAATGTCCTATGGCAGGCACATTCTACCGTAGTCCAGGACCTGGGGAGCCACCATTTGTTAAGGTAAGTTTATTGGAATGGCTCTGCTGCAACTTCTTATTTCATTGTCTTGGGGCTTATTTGTGGGGTTCTTCATATAGGTTGGAGATAAAGTACAGAAAGGACAAGTCTTGTGCATCATTGAGGCCATGAAATTAATGAACGAAATAGAAGTAAGATTTCCCCTCTTTATCCATTTAAATCTTATGAATGCGAAAAGTTATATTGAATTTTACCATCGTTAGATTTGATCCAATTCTACCACTGCTTGCTATCTCATTGTCTTACATTAGTTTTATTTCCGTTCTCTGTTTGATTTGCTAACAATATATTCCATACTTACCATAGTATTGTCCATTATGCGGGAATATTGACTGTTTATGGCAACCTGATCATGGGTGAAACAACCACTGTTTTTCCTCTGTAGTAAACATTCACCTCTCTTGTTACATTTCAAAGAATATTGATGTGACCGAATATAGGAAAAATGGAGCAATAATAGTGAGATGCCACATTGGTTGGGGAGGAGAACGAAGCATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGATGCGTTTTAAAAACCTTGAGAGGAAACCCGAAAAGGAAAGGCCCAAAGAGGGCAATGTCTGCTAGCGGTGGACTTGGGCCGTTACAAATTGTATCAGAGCCAGACACCAGGCAATATGCCAGCGAGGAGGTTGAGCCCCGAAGGGGATGGACACAAGGCGGTGTGTTAGCAAGGACGTTGGAACCCGTAGGGGGGTCCCACATCGATTGGATTAAGGAAAGAGTGTCAACGAGGACACTGGGACCCGAAAGGGGGTGGATTGTGAGATCCCACATTGGTTGGGGAGGAGAAAGAAGCATTGTTTATAATGATATGGAAACCTCTCCCTAGCAAACGTGTTTTAAAAACTTTGATGGGAAGTCTGAAAAGGAAAGCCCAAAGAGAACAATATCTGCTAGCGGTGGGCTTGGGTTGTTACAAATTTCAATTGAGTTAACATTTGTACAAACAATATAGGAGACAGAATTAGATCTGACCATTGTAGTTTGTTTCGTATTGTTCCATGAGAACAATTTACCCCTACAAGATAATCGGTAGTAAATCTCCTATCAGTCCTGTCCAACCCACAGCTAATATTTAGTTCTTTGATCATTCCTAGTGATTCTATTTATAGATCAACAAGCTTTTGTCAAACAATGTATGAAAAGCTGCAAAGGAAGCTTACACAAAGGTGCTCCAGTTGGTATTAATTACAAAAGAAAAAAAAAAGACATGCATCACGAAGATGCCTTATAACACAAGGACACAGTTGGCTAGAACATATCCTATTCAATTAAAGTCACGGCCTCAAGAAGAAACCCTGAAGTGAATAGCCTCCCACACATGGTCCCAACCCTCTCTATCTTAAAACTTTGAAAGTTTCTTTCCTTGCTGACTGCAATCCACATAAATTTGAGCATTGGGATTCAGATCCAAACCATAAAGCCTCTGGTTCAAGGACCTAACACCATCTTCATGGTAGCACCAAGAAATACCAAAAGAATTAAGTAGGGCGAACCACCATTTTTAGCTAATTTGGAAACAGAAAATAAATCCTGTATTATTAAAGTATAAATGAACAACAATAGTGAGATTGAACGAAAGGATGTAGGGGTGCGCCTTTTGAATTACATCAGTTGTGCTTAATCTATTAAACAATTGTGAGATCCCACACCGGTTGGAGAGTACGAGGCATTCCTTATAAGGGTGTGGAAACCTCTCTCGAGTAGACGTGTTTTAAAACCGTGAGGCTGACGGCGATACGTAAGGGGCCAAAGTGGACAATATTTACTAACAGTGGGCTTGGGTTGTTACAAATGGTATCAAAGCTAGTCACCGGGTGGTGTGCCAGCGAGTGGATTGTGAGATCCTAATTCGATTAGAGAGGGGAATGAAACATTCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGTTTTTTAAAACCGTGAGGTTGACGATGATACGTAACTGGTCAAAACGGACAACGTTTGCTAGCGGTGGGTGTGGGTTTGGGCTTGGGCTGTTACAAAAGTCCTAAGTTCGTTTTGGAACATGAAATATAGTTGGGAACACCATTTTAAAGTAAACTTCATTATATCAATATTTCAACTCTCCTCTCCCTTCTAGATATGGAAATTTGAATAGAGCCCAAACAAGTGGAAACCGATATTAGTTGGAAAGGAATGGCGTTACACGGGTTTGAACATAGAAGCTTATCTTATGATACCATGTTAAATCACCACTAAACTCATAACGACAGATTTAATTATATCAATATGTCAACAAAAAGTTCGAGAAAATTAGCAAGAAAGTGTGTTTACAATAGAGTAGAACTTCGATAGACCTTGTTTGATTTTTTTATATTATTAGCTAATCTCTGCTCTTAAAAAAATTTAATATACAGGCCGATCAATCTGGAACCATAGTCGAGGTTCTTGCAGAGGACGGGAAGCCTGTCAGCGTTGGTGTGGTAAGTCATTCTAACCACCATTACAGTTACTGTAATGAATAGCTTAACTCTACATTGTTTGTTTGTATGGATTTGTGTGCTTGAACCTTCTTCTGGTTTCTCTGCAGCCTTTGTTTGTCATTCAACCTTAGGCCAATCCGGGTTTCGATTACACGAGACGAGTAAAGGAGATGAGATTAAGCTGAGTTTGGGAAGCAAATTGAGTTTCCGAGCAAGTTCGGGTTGTGAGTTAGTTATTGGTAGTGTCCTTTTTCCCCCCGTTCTTTCGTTTTCCTCTTCAGTTGAGCGTAGTCATGATAGAGATTGTGTTGATGAACATATCAATTCCTTTTCCAGTTTTCGTGTGAACTTTCAACTTTCTTTGTGAAATCAGATATATATATATTCCTTTTCCATCT AGTTAATCTTCATCTCCCCTCTTCCCACTCTCGCGCCTCATTGGTTTCATCGTCCGCCGTCCACCCGCCACCTGCAACGCCTCCTCCTTCCTTCTCCGTTGGGCGGAGTTTCCTAAGCTGTACCTTTCTTTTACTTCCGACGAATCAATTTCACCTGCCCTCTCGAATCAGATTCGCTTCTTTTCAGCTAATACCCAATGGCTTCCTCGCTCGCTTCAGCTTCAGCTGCTTCCGCAGTGGCCAAATCTCCTTGCACGGCCATGGCTCGCCGCGATATCAACCACAAGAACTCTCATTGCGCGCTCTCTTTTCGGCTCCCTCACAAGCCCAAACTCCGAATCTTCACCAGGTCGTCTATTTCATTGAAGGATCCTGTTGATGCACCTAATGCTGCAAAAGTTTCATCTGAATCTGATGTTTTAGCATCAGATGGAAGTGCCAAACCATTGAGTGATCAATCTTCTAAAGTTTTGGCAACGGAAGAGTCAATCTCTGAGTTCATTACTCAAGTTTCAAGCCTTATCAAACTGGTTGATTCCAGAGATATTGTAGAGTTGCAACTGAAACAGCTCGACTGTGAAGTGATAATCCGAAAAAAGGAGGCCTTACCACAACCGCCACCTCCTGCTGCCATTCCTATGCCGTATGCACCCCCACCTTCAGTAGCACAGTCAGTTCCTCCCCCTGTGCCTGCTGCACTGCCAGCGCCCGCTTCTCCTGTTTCAAGCCTGCCATCTTCACCTCCTGCTGCTAAGTCGGCCAAGTCCTCCCTTCCACCTCTTAAATGTCCTATGGCAGGCACATTCTACCGTAGTCCAGGACCTGGGGAGCCACCATTTGTTAAGGTTGGAGATAAAGTACAGAAAGGACAAGTCTTGTGCATCATTGAGGCCATGAAATTAATGAACGAAATAGAAGCCGATCAATCTGGAACCATAGTCGAGGTTCTTGCAGAGGACGGGAAGCCTGTCAGCGTTGGTGTGCCTTTGTTTGTCATTCAACCTTAGGCCAATCCGGGTTTCGATTACACGAGACGAGTAAAGGAGATGAGATTAAGCTGAGTTTGGGAAGCAAATTGAGTTTCCGAGCAAGTTCGGGTTGTGAGTTAGTTATTGGTAGTGTCCTTTTTCCCCCCGTTCTTTCGTTTTCCTCTTCAGTTGAGCGTAGTCATGATAGAGATTGTGTTGATGAACATATCAATTCCTTTTCCAGTTTTCGTGTGAACTTTCAACTTTCTTTGTGAAATCAGATATATATATATTCCTTTTCCATCT ATGGCTTCCTCGCTCGCTTCAGCTTCAGCTGCTTCCGCAGTGGCCAAATCTCCTTGCACGGCCATGGCTCGCCGCGATATCAACCACAAGAACTCTCATTGCGCGCTCTCTTTTCGGCTCCCTCACAAGCCCAAACTCCGAATCTTCACCAGGTCGTCTATTTCATTGAAGGATCCTGTTGATGCACCTAATGCTGCAAAAGTTTCATCTGAATCTGATGTTTTAGCATCAGATGGAAGTGCCAAACCATTGAGTGATCAATCTTCTAAAGTTTTGGCAACGGAAGAGTCAATCTCTGAGTTCATTACTCAAGTTTCAAGCCTTATCAAACTGGTTGATTCCAGAGATATTGTAGAGTTGCAACTGAAACAGCTCGACTGTGAAGTGATAATCCGAAAAAAGGAGGCCTTACCACAACCGCCACCTCCTGCTGCCATTCCTATGCCGTATGCACCCCCACCTTCAGTAGCACAGTCAGTTCCTCCCCCTGTGCCTGCTGCACTGCCAGCGCCCGCTTCTCCTGTTTCAAGCCTGCCATCTTCACCTCCTGCTGCTAAGTCGGCCAAGTCCTCCCTTCCACCTCTTAAATGTCCTATGGCAGGCACATTCTACCGTAGTCCAGGACCTGGGGAGCCACCATTTGTTAAGGTTGGAGATAAAGTACAGAAAGGACAAGTCTTGTGCATCATTGAGGCCATGAAATTAATGAACGAAATAGAAGCCGATCAATCTGGAACCATAGTCGAGGTTCTTGCAGAGGACGGGAAGCCTGTCAGCGTTGGTGTGCCTTTGTTTGTCATTCAACCTTAG MASSLASASAASAVAKSPCTAMARRDINHKNSHCALSFRLPHKPKLRIFTRSSISLKDPVDAPNAAKVSSESDVLASDGSAKPLSDQSSKVLATEESISEFITQVSSLIKLVDSRDIVELQLKQLDCEVIIRKKEALPQPPPPAAIPMPYAPPPSVAQSVPPPVPAALPAPASPVSSLPSSPPAAKSAKSSLPPLKCPMAGTFYRSPGPGEPPFVKVGDKVQKGQVLCIIEAMKLMNEIEADQSGTIVEVLAEDGKPVSVGVPLFVIQP
BLAST of Carg23008-RA vs. NCBI nr
Match: XP_022946679.1 (biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 407.5 bits (1046), Expect = 3.5e-110 Identity = 267/287 (93.03%), Postives = 268/287 (93.38%), Query Frame = 0
BLAST of Carg23008-RA vs. NCBI nr
Match: XP_023547169.1 (biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 404.4 bits (1038), Expect = 2.9e-109 Identity = 260/284 (91.55%), Postives = 262/284 (92.25%), Query Frame = 0
BLAST of Carg23008-RA vs. NCBI nr
Match: XP_023547168.1 (biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 403.3 bits (1035), Expect = 6.5e-109 Identity = 260/287 (90.59%), Postives = 262/287 (91.29%), Query Frame = 0
BLAST of Carg23008-RA vs. NCBI nr
Match: XP_022946680.1 (biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 399.1 bits (1024), Expect = 1.2e-107 Identity = 261/281 (92.88%), Postives = 264/281 (93.95%), Query Frame = 0
BLAST of Carg23008-RA vs. NCBI nr
Match: XP_023547170.1 (biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic-like isoform X3 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 394.8 bits (1013), Expect = 2.3e-106 Identity = 254/281 (90.39%), Postives = 258/281 (91.81%), Query Frame = 0
BLAST of Carg23008-RA vs. TAIR10
Match: AT5G16390.1 (chloroplastic acetylcoenzyme A carboxylase 1) HSP 1 Score: 207.6 bits (527), Expect = 9.5e-54 Identity = 168/280 (60.00%), Postives = 196/280 (70.00%), Query Frame = 0
BLAST of Carg23008-RA vs. TAIR10
Match: AT5G15530.1 (biotin carboxyl carrier protein 2) HSP 1 Score: 173.7 bits (439), Expect = 1.5e-43 Identity = 133/172 (77.33%), Postives = 148/172 (86.05%), Query Frame = 0
BLAST of Carg23008-RA vs. TAIR10
Match: AT3G15690.2 (Single hybrid motif superfamily protein) HSP 1 Score: 51.2 bits (121), Expect = 1.1e-06 Identity = 31/78 (39.74%), Postives = 43/78 (55.13%), Query Frame = 0
BLAST of Carg23008-RA vs. TAIR10
Match: AT1G52670.1 (Single hybrid motif superfamily protein) HSP 1 Score: 47.8 bits (112), Expect = 1.3e-05 Identity = 49/174 (28.16%), Postives = 69/174 (39.66%), Query Frame = 0
BLAST of Carg23008-RA vs. Swiss-Prot
Match: sp|Q42533|BCCP1_ARATH (Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BCCP1 PE=1 SV=2) HSP 1 Score: 207.6 bits (527), Expect = 1.7e-52 Identity = 168/280 (60.00%), Postives = 196/280 (70.00%), Query Frame = 0
BLAST of Carg23008-RA vs. Swiss-Prot
Match: sp|Q9LLC1|BCCP2_ARATH (Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BCCP2 PE=1 SV=1) HSP 1 Score: 173.7 bits (439), Expect = 2.7e-42 Identity = 133/172 (77.33%), Postives = 148/172 (86.05%), Query Frame = 0
BLAST of Carg23008-RA vs. Swiss-Prot
Match: sp|Q42783|BCCP_SOYBN (Biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic OS=Glycine max OX=3847 GN=ACCB-1 PE=1 SV=1) HSP 1 Score: 169.9 bits (429), Expect = 4.0e-41 Identity = 138/189 (73.02%), Postives = 150/189 (79.37%), Query Frame = 0
BLAST of Carg23008-RA vs. Swiss-Prot
Match: sp|Q06881|BCCP_NOSS1 (Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=accB PE=1 SV=2) HSP 1 Score: 98.6 bits (244), Expect = 1.1e-19 Identity = 45/78 (57.69%), Postives = 60/78 (76.92%), Query Frame = 0
BLAST of Carg23008-RA vs. Swiss-Prot
Match: sp|P0ABE0|BCCP_ECO57 (Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Escherichia coli O157:H7 OX=83334 GN=accB PE=3 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 6.8e-17 Identity = 40/74 (54.05%), Postives = 53/74 (71.62%), Query Frame = 0
BLAST of Carg23008-RA vs. TrEMBL
Match: tr|A0A1S3C4K6|A0A1S3C4K6_CUCME (Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Cucumis melo OX=3656 GN=LOC103496408 PE=4 SV=1) HSP 1 Score: 294.7 bits (753), Expect = 2.2e-76 Identity = 215/287 (74.91%), Postives = 227/287 (79.09%), Query Frame = 0
BLAST of Carg23008-RA vs. TrEMBL
Match: tr|A0A1S3C3B6|A0A1S3C3B6_CUCME (Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Cucumis melo OX=3656 GN=LOC103496408 PE=4 SV=1) HSP 1 Score: 288.1 bits (736), Expect = 2.0e-74 Identity = 211/281 (75.09%), Postives = 224/281 (79.72%), Query Frame = 0
BLAST of Carg23008-RA vs. TrEMBL
Match: tr|A0A0A0LFE8|A0A0A0LFE8_CUCSA (Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Cucumis sativus OX=3659 GN=Csa_2G009520 PE=4 SV=1) HSP 1 Score: 276.6 bits (706), Expect = 6.1e-71 Identity = 204/283 (72.08%), Postives = 219/283 (77.39%), Query Frame = 0
BLAST of Carg23008-RA vs. TrEMBL
Match: tr|A0A2I4E8B4|A0A2I4E8B4_9ROSI (Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Juglans regia OX=51240 GN=LOC108987217 PE=4 SV=1) HSP 1 Score: 239.6 bits (610), Expect = 8.3e-60 Identity = 160/245 (65.31%), Postives = 188/245 (76.73%), Query Frame = 0
BLAST of Carg23008-RA vs. TrEMBL
Match: tr|A0A2I4E8B2|A0A2I4E8B2_9ROSI (Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Juglans regia OX=51240 GN=LOC108987217 PE=4 SV=1) HSP 1 Score: 236.9 bits (603), Expect = 5.3e-59 Identity = 165/258 (63.95%), Postives = 191/258 (74.03%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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