Carg22719-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22719-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein TIC 20-v, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_230 : 308255 .. 308731 (+)
Sequence length	477

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTACAACCCTACTCCGGCCACCGACCGCCTCATCTCCGCCGTCGCCTACAGTCTCCCCTTCTTCAACTCCCTCCAGTACGGCCGCTTCCTCTTCACCCAGTACCCGGTCCTCGGCCTCGCCTTCGAACCGATTCTCCCTATTCTAGGGCTTTATCGCTCGATCCCACACTCTAGCTTCATCGCCTTCTTTGCGCTCTACTTGGGCGTTGTCCGGAACCCTAACTTCAACCGCTACGTGAGGTTCAATTCAATGCAGGCGGTGACCCTGGACGTGCTGCTGGCGGTGCCGTTGTTGATACAGAGGATTCTGAGTCCCGGTCCGGGCGGATTAGGGTTCCAGATTATGGTTTGGGGCCATAATGGATTGTTTCTTTTCAGTGTTTTGTGTTTTGTTCACAGTCTCGCTTCTTGCCTTCTGGGTCGGACCCCTCACTTGCCGCTTGTTGCTGATGCTGCTGGCAGGCAGATTTAG

mRNA sequence

ATGTCCTACAACCCTACTCCGGCCACCGACCGCCTCATCTCCGCCGTCGCCTACAGTCTCCCCTTCTTCAACTCCCTCCAGTACGGCCGCTTCCTCTTCACCCAGTACCCGGTCCTCGGCCTCGCCTTCGAACCGATTCTCCCTATTCTAGGGCTTTATCGCTCGATCCCACACTCTAGCTTCATCGCCTTCTTTGCGCTCTACTTGGGCGTTGTCCGGAACCCTAACTTCAACCGCTACGTGAGGTTCAATTCAATGCAGGCGGTGACCCTGGACGTGCTGCTGGCGGTGCCGTTGTTGATACAGAGGATTCTGAGTCCCGGTCCGGGCGGATTAGGGTTCCAGATTATGGTTTGGGGCCATAATGGATTGTTTCTTTTCAGTGTTTTGTGTTTTGTTCACAGTCTCGCTTCTTGCCTTCTGGGTCGGACCCCTCACTTGCCGCTTGTTGCTGATGCTGCTGGCAGGCAGATTTAG

Coding sequence (CDS)

ATGTCCTACAACCCTACTCCGGCCACCGACCGCCTCATCTCCGCCGTCGCCTACAGTCTCCCCTTCTTCAACTCCCTCCAGTACGGCCGCTTCCTCTTCACCCAGTACCCGGTCCTCGGCCTCGCCTTCGAACCGATTCTCCCTATTCTAGGGCTTTATCGCTCGATCCCACACTCTAGCTTCATCGCCTTCTTTGCGCTCTACTTGGGCGTTGTCCGGAACCCTAACTTCAACCGCTACGTGAGGTTCAATTCAATGCAGGCGGTGACCCTGGACGTGCTGCTGGCGGTGCCGTTGTTGATACAGAGGATTCTGAGTCCCGGTCCGGGCGGATTAGGGTTCCAGATTATGGTTTGGGGCCATAATGGATTGTTTCTTTTCAGTGTTTTGTGTTTTGTTCACAGTCTCGCTTCTTGCCTTCTGGGTCGGACCCCTCACTTGCCGCTTGTTGCTGATGCTGCTGGCAGGCAGATTTAG

Protein sequence

MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI

Homology

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BLAST of Carg22719-RA vs. NCBI nr
Match: XP_023005732.1 (protein TIC 20-II, chloroplastic-like isoform X1 [Cucurbita maxima] >XP_023005740.1 protein TIC 20-II, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 312.8 bits (800), Expect = 6.8e-82
Identity = 155/158 (98.10%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS 60
           MSYNPTPATDRLISAVAY+LPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS
Sbjct: 58  MSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS 117

Query: 61  FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWG 120
           FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPG GGLGFQIMVWG
Sbjct: 118 FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGSGGLGFQIMVWG 177

Query: 121 HNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
           HNGLFLFSVLCFV+SLASCLLGRTPHLPLVADAAGRQI
Sbjct: 178 HNGLFLFSVLCFVYSLASCLLGRTPHLPLVADAAGRQI 215

[Close]

BLAST of Carg22719-RA vs. NCBI nr
Match: XP_023005745.1 (protein TIC 20-II, chloroplastic-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 312.8 bits (800), Expect = 6.8e-82
Identity = 155/158 (98.10%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS 60
           MSYNPTPATDRLISAVAY+LPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS
Sbjct: 51  MSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS 110

Query: 61  FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWG 120
           FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPG GGLGFQIMVWG
Sbjct: 111 FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGSGGLGFQIMVWG 170

Query: 121 HNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
           HNGLFLFSVLCFV+SLASCLLGRTPHLPLVADAAGRQI
Sbjct: 171 HNGLFLFSVLCFVYSLASCLLGRTPHLPLVADAAGRQI 208

[Close]

BLAST of Carg22719-RA vs. NCBI nr
Match: XP_023520670.1 (protein TIC 20-II, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023520671.1 protein TIC 20-II, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 308.1 bits (788), Expect = 1.7e-80
Identity = 153/158 (96.84%), Postives = 155/158 (98.10%), Query Frame = 0


Query: 1   MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS 60
           MSYNPTPATDRLISAVAY+LPFFNSLQYGR LFTQYPVLGLAFEPILPILGLYRSIPHSS
Sbjct: 51  MSYNPTPATDRLISAVAYTLPFFNSLQYGRLLFTQYPVLGLAFEPILPILGLYRSIPHSS 110

Query: 61  FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWG 120
           FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWG
Sbjct: 111 FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWG 170

Query: 121 HNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
           HNGLFLFSVLCFV+ LASCLLGRTPHL LVADAAGRQI
Sbjct: 171 HNGLFLFSVLCFVYRLASCLLGRTPHLRLVADAAGRQI 208

[Close]

BLAST of Carg22719-RA vs. NCBI nr
Match: XP_004139099.1 (PREDICTED: protein TIC 20-II, chloroplastic [Cucumis sativus] >XP_011660219.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis sativus] >XP_011660220.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis sativus] >KGN66660.1 hypothetical protein Csa_1G654890 [Cucumis sativus])

HSP 1 Score: 288.1 bits (736), Expect = 1.8e-74
Identity = 138/158 (87.34%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 1   MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS 60
           MSYNPTPATDRLISAVAY+LPFFNSLQYGRFLF QYP LG AFEP+LPILGLYRSIPHSS
Sbjct: 51  MSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSS 110

Query: 61  FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWG 120
           F+AFFALYLGVVRNP+FN YVRFNSMQAVTLDVLL VPLLIQRILSPG  G+GF+IMVW 
Sbjct: 111 FVAFFALYLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWS 170

Query: 121 HNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
           HNGLF+FSVLCF++S+ SCLLGRTPHLP+VADAAGRQI
Sbjct: 171 HNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 208

[Close]

BLAST of Carg22719-RA vs. NCBI nr
Match: XP_008443678.1 (PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443680.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443681.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443682.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443683.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo])

HSP 1 Score: 287.7 bits (735), Expect = 2.3e-74
Identity = 137/158 (86.71%), Postives = 150/158 (94.94%), Query Frame = 0


Query: 1   MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS 60
           MSYNPTPATDRLISAV+Y+LPFFNSLQYGRFLF QYP LG AFEP+LPILGLYRSIPHSS
Sbjct: 54  MSYNPTPATDRLISAVSYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSS 113

Query: 61  FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWG 120
           F+AFFALYLGVVRNP+F+ YVRFNSMQAVTLDVLL VPLLIQRILSPG GG+GF+IMVW 
Sbjct: 114 FVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGIGFKIMVWS 173

Query: 121 HNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
           HNGLF+FSVLCF++S+ SCLLGRTPHLP+VADAAGRQI
Sbjct: 174 HNGLFVFSVLCFLYSMVSCLLGRTPHLPIVADAAGRQI 211

[Close]

BLAST of Carg22719-RA vs. TAIR10
Match: AT2G47840.1 (Uncharacterised conserved protein ycf60)

HSP 1 Score: 236.1 bits (601), Expect = 1.5e-62
Identity = 111/158 (70.25%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 2   SYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSF 61
           SY PTPAT+R+IS  +Y+LPFFNSLQYGRFLF QYP LGL FEPI PIL LYRS+P++SF
Sbjct: 51  SYTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRSVPYASF 110

Query: 62  IAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGP-GGLGFQIMVWG 121
           +AFF LYLGVVRN +F+RYVRFN+MQAVTLDVLLAVP+L+ RIL PG  GG G + M+WG
Sbjct: 111 VAFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQGGGFGMKAMMWG 170

Query: 122 HNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
           H G+F+FS +CFV+ + S LLG+TP++P VADAAGRQ+
Sbjct: 171 HTGVFVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208

[Close]

BLAST of Carg22719-RA vs. TAIR10
Match: AT5G55710.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 147.9 bits (372), Expect = 5.3e-36
Identity = 70/151 (46.36%), Postives = 103/151 (68.21%), Query Frame = 0


Query: 8   ATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFAL 67
           A+DR+ISAV Y  PFF+ +QYG+F+ TQY    +  +P+ P +  ++S P + F+ F  L
Sbjct: 59  ASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITL 118

Query: 68  YLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWGHNGLFLF 127
           Y  VVRNPNF+RYVRFN+MQA+ LDVLL  P L++R  +P   G G  +++   + +FLF
Sbjct: 119 YFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNP-RDGFGLDVVMSLDSTVFLF 178

Query: 128 SVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
            ++  ++  ++CL G TP LPLVA+AA RQ+
Sbjct: 179 LLVSLIYGFSACLFGLTPRLPLVAEAADRQV 208

[Close]

BLAST of Carg22719-RA vs. Swiss-Prot
Match: sp|O82251|TI202_ARATH (Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-II PE=2 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.6e-61
Identity = 111/158 (70.25%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 2   SYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSF 61
           SY PTPAT+R+IS  +Y+LPFFNSLQYGRFLF QYP LGL FEPI PIL LYRS+P++SF
Sbjct: 51  SYTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRSVPYASF 110

Query: 62  IAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGP-GGLGFQIMVWG 121
           +AFF LYLGVVRN +F+RYVRFN+MQAVTLDVLLAVP+L+ RIL PG  GG G + M+WG
Sbjct: 111 VAFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQGGGFGMKAMMWG 170

Query: 122 HNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
           H G+F+FS +CFV+ + S LLG+TP++P VADAAGRQ+
Sbjct: 171 HTGVFVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208

[Close]

BLAST of Carg22719-RA vs. Swiss-Prot
Match: sp|Q9FM67|TI205_ARATH (Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-V PE=2 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.5e-35
Identity = 70/151 (46.36%), Postives = 103/151 (68.21%), Query Frame = 0


Query: 8   ATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFAL 67
           A+DR+ISAV Y  PFF+ +QYG+F+ TQY    +  +P+ P +  ++S P + F+ F  L
Sbjct: 59  ASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITL 118

Query: 68  YLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWGHNGLFLF 127
           Y  VVRNPNF+RYVRFN+MQA+ LDVLL  P L++R  +P   G G  +++   + +FLF
Sbjct: 119 YFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNP-RDGFGLDVVMSLDSTVFLF 178

Query: 128 SVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
            ++  ++  ++CL G TP LPLVA+AA RQ+
Sbjct: 179 LLVSLIYGFSACLFGLTPRLPLVAEAADRQV 208

[Close]

BLAST of Carg22719-RA vs. Swiss-Prot
Match: sp|P73387|YC60L_SYNY3 (Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1737 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.1e-21
Identity = 54/151 (35.76%), Postives = 91/151 (60.26%), Query Frame = 0


Query: 10  DRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYL 69
           DR  SA+ Y +P  ++  +G FL  Q+PVL + + PI+P+L  Y   P +SFI F  L++
Sbjct: 11  DRFFSALIYVIPLIDAFMFGGFLLQQFPVLQIIYLPIMPLLQFYYQFPFASFIIFIVLFM 70

Query: 70  GVVRNPNFNRYVRFNSMQAVTLDVLLAV-PLLIQRILSPGPG-GLGFQIMVWGHNGLFLF 129
            VVRN N + ++RFN+MQA+ + +LL++  L++  ++ P  G GL  + +   +N  FL 
Sbjct: 71  AVVRNNNISHFIRFNAMQAILIGILLSLFGLIVAYVIQPVFGQGLVTETL---YNFAFLG 130

Query: 130 SVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
           ++ C    +   +LGR   +P ++DAA  Q+
Sbjct: 131 ALACGFFGIVQSVLGRYAEIPTISDAAYSQV 158

[Close]

BLAST of Carg22719-RA vs. TrEMBL
Match: tr|A0A0A0LXS7|A0A0A0LXS7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G654890 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 1.2e-74
Identity = 138/158 (87.34%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 1   MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS 60
           MSYNPTPATDRLISAVAY+LPFFNSLQYGRFLF QYP LG AFEP+LPILGLYRSIPHSS
Sbjct: 51  MSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSS 110

Query: 61  FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWG 120
           F+AFFALYLGVVRNP+FN YVRFNSMQAVTLDVLL VPLLIQRILSPG  G+GF+IMVW 
Sbjct: 111 FVAFFALYLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWS 170

Query: 121 HNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
           HNGLF+FSVLCF++S+ SCLLGRTPHLP+VADAAGRQI
Sbjct: 171 HNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 208

[Close]

BLAST of Carg22719-RA vs. TrEMBL
Match: tr|A0A1S3B9C6|A0A1S3B9C6_CUCME (protein TIC 20-II, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487217 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.6e-74
Identity = 137/158 (86.71%), Postives = 150/158 (94.94%), Query Frame = 0


Query: 1   MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS 60
           MSYNPTPATDRLISAV+Y+LPFFNSLQYGRFLF QYP LG AFEP+LPILGLYRSIPHSS
Sbjct: 54  MSYNPTPATDRLISAVSYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSS 113

Query: 61  FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWG 120
           F+AFFALYLGVVRNP+F+ YVRFNSMQAVTLDVLL VPLLIQRILSPG GG+GF+IMVW 
Sbjct: 114 FVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGIGFKIMVWS 173

Query: 121 HNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
           HNGLF+FSVLCF++S+ SCLLGRTPHLP+VADAAGRQI
Sbjct: 174 HNGLFVFSVLCFLYSMVSCLLGRTPHLPIVADAAGRQI 211

[Close]

BLAST of Carg22719-RA vs. TrEMBL
Match: tr|A0A218XML5|A0A218XML5_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr010978 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 5.9e-66
Identity = 120/158 (75.95%), Postives = 145/158 (91.77%), Query Frame = 0


Query: 1   MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS 60
           MSY+ TPATDRLISAVAY LPFFNSLQYGRFLF +YP LG+ F+PILP+L LY+S+P++S
Sbjct: 64  MSYSSTPATDRLISAVAYMLPFFNSLQYGRFLFLKYPALGVLFDPILPLLSLYKSVPYAS 123

Query: 61  FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWG 120
           F+AFFALYLG+VRNP+F+ YVRFNSMQAVTLDVLL +PLL+QRILSPG  GLGF++MVWG
Sbjct: 124 FVAFFALYLGIVRNPSFSHYVRFNSMQAVTLDVLLVIPLLLQRILSPGRAGLGFRLMVWG 183

Query: 121 HNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
           HN +F+FSVLCF++S+AS +LGRTP+LP VADAAGRQ+
Sbjct: 184 HNAIFVFSVLCFLYSVASSILGRTPYLPFVADAAGRQL 221

[Close]

BLAST of Carg22719-RA vs. TrEMBL
Match: tr|A0A2I0KEI0|A0A2I0KEI0_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_012684 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 5.9e-66
Identity = 120/158 (75.95%), Postives = 145/158 (91.77%), Query Frame = 0


Query: 1   MSYNPTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSS 60
           MSY+ TPATDRLISAVAY LPFFNSLQYGRFLF +YP LG+ F+PILP+L LY+S+P++S
Sbjct: 1   MSYSSTPATDRLISAVAYMLPFFNSLQYGRFLFLKYPALGVLFDPILPLLSLYKSVPYAS 60

Query: 61  FIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGFQIMVWG 120
           F+AFFALYLG+VRNP+F+ YVRFNSMQAVTLDVLL +PLL+QRILSPG  GLGF++MVWG
Sbjct: 61  FVAFFALYLGIVRNPSFSHYVRFNSMQAVTLDVLLVIPLLLQRILSPGRAGLGFRLMVWG 120

Query: 121 HNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
           HN +F+FSVLCF++S+AS +LGRTP+LP VADAAGRQ+
Sbjct: 121 HNAIFVFSVLCFLYSVASSILGRTPYLPFVADAAGRQL 158

[Close]

BLAST of Carg22719-RA vs. TrEMBL
Match: tr|A0A2P5EU92|A0A2P5EU92_9ROSA (Chloroplast protein import component OS=Trema orientalis OX=63057 GN=TorRG33x02_149720 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 2.2e-65
Identity = 129/164 (78.66%), Postives = 145/164 (88.41%), Query Frame = 0


Query: 1   MSYN-----PTPATDRLISAVAYSLPFFNSLQYGRFLFTQYPVLG-LAFEPILPILGLYR 60
           MSYN      TPATDRLISAVAY+LPFFNSLQYGRFLF QYP LG L F+P+LPI+GLYR
Sbjct: 51  MSYNQNRGTTTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPKLGRLLFDPLLPIIGLYR 110

Query: 61  SIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGPGGLGF 120
           SIP+SSF+AFFALYLGVVRNP+F+ YVRFNSMQAVTLDVLL VPLL+QRI SPG  GLGF
Sbjct: 111 SIPYSSFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLLQRIFSPGRAGLGF 170

Query: 121 QIMVWGHNGLFLFSVLCFVHSLASCLLGRTPHLPLVADAAGRQI 159
           +++VW H  LF+FSVLCFV+SL SC+LGRTP+LPLVADAAGRQI
Sbjct: 171 RVVVWVHTALFVFSVLCFVYSLVSCVLGRTPYLPLVADAAGRQI 214

The following BLAST results are available for this feature:

BLAST of Carg22719-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023005732.1	6.8e-82	98.10	protein TIC 20-II, chloroplastic-like isoform X1 [Cucurbita maxima] >XP_02300574...	[more]
XP_023005745.1	6.8e-82	98.10	protein TIC 20-II, chloroplastic-like isoform X2 [Cucurbita maxima]	[more]
XP_023520670.1	1.7e-80	96.84	protein TIC 20-II, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023520671...	[more]
XP_004139099.1	1.8e-74	87.34	PREDICTED: protein TIC 20-II, chloroplastic [Cucumis sativus] >XP_011660219.1 PR...	[more]
XP_008443678.1	2.3e-74	86.71	PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443680.1 PREDI...	[more]

BLAST of Carg22719-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47840.1	1.5e-62	70.25	Uncharacterised conserved protein ycf60	[more]
AT5G55710.1	5.3e-36	46.36	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of Carg22719-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O82251\|TI202_ARATH	2.6e-61	70.25	Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-II PE=...	[more]
sp\|Q9FM67\|TI205_ARATH	9.5e-35	46.36	Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-V PE=2 ...	[more]
sp\|P73387\|YC60L_SYNY3	2.1e-21	35.76	Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 ...	[more]

BLAST of Carg22719-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LXS7\|A0A0A0LXS7_CUCSA	1.2e-74	87.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G654890 PE=4 SV=1	[more]
tr\|A0A1S3B9C6\|A0A1S3B9C6_CUCME	1.6e-74	86.71	protein TIC 20-II, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487217 PE=4 SV...	[more]
tr\|A0A218XML5\|A0A218XML5_PUNGR	5.9e-66	75.95	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr010978 PE=4 SV=1	[more]
tr\|A0A2I0KEI0\|A0A2I0KEI0_PUNGR	5.9e-66	75.95	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_012684 PE=4 SV=1	[more]
tr\|A0A2P5EU92\|A0A2P5EU92_9ROSA	2.2e-65	78.66	Chloroplast protein import component OS=Trema orientalis OX=63057 GN=TorRG33x02_...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005691	Tic20

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg22719	Carg22719	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg22719-RA.exon.1	Carg22719-RA.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg22719-RA.CDS.1	Carg22719-RA.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg22719-RA	Carg22719-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005691	Chloroplast protein import component Tic20	PFAM	PF16166	TIC20	coord: 11..154 e-value: 6.7E-44 score: 149.7
IPR005691	Chloroplast protein import component Tic20	PANTHER	PTHR33510	FAMILY NOT NAMED	coord: 1..158
None	No IPR available	PANTHER	PTHR33510:SF1	PROTEIN TIC 20-II, CHLOROPLASTIC	coord: 1..158