Carg21726-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAGATTACAGGTCGCATGGAAATGGGTTCGGCGGGGACATCAACACAGAGAGCACCTCCGCCACAAACCCTGGAAGCTCATACGAATTGAGGTCATATTCCGCGTCTTATGCGCAGACCCAGATGGAGACGAAGAAAGGGGAAAAGGGTTGTGGGTCTTTCCCCAAGTCTTGGAGCTTGTCGGACCCTGAATTTCAGAGGAAGAAGAGGGTTGCTAGCTACAAGATGTACTCTGTGGAAGGCAAAATGAAGGGGTCTTTCAGAAACAGCTTCCGATGGCTGAAGCGCAGATGCGAACAGGTGGTTTATGGGTGGTGGTGA ATGGAAGATTACAGGTCGCATGGAAATGGGTTCGGCGGGGACATCAACACAGAGAGCACCTCCGCCACAAACCCTGGAAGCTCATACGAATTGAGGTCATATTCCGCGTCTTATGCGCAGACCCAGATGGAGACGAAGAAAGGGGAAAAGGGTTGTGGGTCTTTCCCCAAGTCTTGGAGCTTGTCGGACCCTGAATTTCAGAGGAAGAAGAGGGTTGCTAGCTACAAGATGTACTCTGTGGAAGGCAAAATGAAGGGGTCTTTCAGAAACAGCTTCCGATGGCTGAAGCGCAGATGCGAACAGGTGGTTTATGGGTGGTGGTGA ATGGAAGATTACAGGTCGCATGGAAATGGGTTCGGCGGGGACATCAACACAGAGAGCACCTCCGCCACAAACCCTGGAAGCTCATACGAATTGAGGTCATATTCCGCGTCTTATGCGCAGACCCAGATGGAGACGAAGAAAGGGGAAAAGGGTTGTGGGTCTTTCCCCAAGTCTTGGAGCTTGTCGGACCCTGAATTTCAGAGGAAGAAGAGGGTTGCTAGCTACAAGATGTACTCTGTGGAAGGCAAAATGAAGGGGTCTTTCAGAAACAGCTTCCGATGGCTGAAGCGCAGATGCGAACAGGTGGTTTATGGGTGGTGGTGA MEDYRSHGNGFGGDINTESTSATNPGSSYELRSYSASYAQTQMETKKGEKGCGSFPKSWSLSDPEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKRRCEQVVYGWW
BLAST of Carg21726-RA vs. NCBI nr
Match: XP_022975771.1 (uncharacterized protein LOC111476369 [Cucurbita maxima]) HSP 1 Score: 206.8 bits (525), Expect = 3.6e-50 Identity = 100/107 (93.46%), Postives = 100/107 (93.46%), Query Frame = 0
BLAST of Carg21726-RA vs. NCBI nr
Match: XP_022136638.1 (uncharacterized protein LOC111008293 [Momordica charantia] >XP_022158308.1 uncharacterized protein LOC111024820 [Momordica charantia]) HSP 1 Score: 168.7 bits (426), Expect = 1.1e-38 Identity = 84/112 (75.00%), Postives = 91/112 (81.25%), Query Frame = 0
BLAST of Carg21726-RA vs. NCBI nr
Match: XP_011654415.1 (PREDICTED: uncharacterized protein LOC101210762 [Cucumis sativus] >KGN55347.1 hypothetical protein Csa_4G646210 [Cucumis sativus]) HSP 1 Score: 166.4 bits (420), Expect = 5.3e-38 Identity = 84/112 (75.00%), Postives = 90/112 (80.36%), Query Frame = 0
BLAST of Carg21726-RA vs. NCBI nr
Match: XP_015884421.1 (uncharacterized protein LOC107420071 [Ziziphus jujuba] >XP_015902649.1 uncharacterized protein LOC107435530 [Ziziphus jujuba]) HSP 1 Score: 125.6 bits (314), Expect = 1.0e-25 Identity = 72/119 (60.50%), Postives = 84/119 (70.59%), Query Frame = 0
BLAST of Carg21726-RA vs. NCBI nr
Match: XP_012452705.1 (PREDICTED: uncharacterized protein LOC105774692 [Gossypium raimondii] >XP_016754850.1 PREDICTED: uncharacterized protein LOC107962828 [Gossypium hirsutum] >XP_016699631.1 PREDICTED: uncharacterized protein LOC107915042 [Gossypium hirsutum] >XP_016699632.1 PREDICTED: uncharacterized protein LOC107915043 [Gossypium hirsutum] >XP_017636442.1 PREDICTED: uncharacterized protein LOC108478494 [Gossypium arboreum] >KJB65518.1 hypothetical protein B456_010G098600 [Gossypium raimondii] >PPS05404.1 hypothetical protein GOBAR_AA15255 [Gossypium barbadense] >PPS05405.1 hypothetical protein GOBAR_AA15256 [Gossypium barbadense] >PPS05406.1 hypothetical protein GOBAR_AA15257 [Gossypium barbadense]) HSP 1 Score: 123.6 bits (309), Expect = 4.0e-25 Identity = 70/116 (60.34%), Postives = 79/116 (68.10%), Query Frame = 0
BLAST of Carg21726-RA vs. TAIR10
Match: AT5G11970.1 (Protein of unknown function (DUF3511)) HSP 1 Score: 101.7 bits (252), Expect = 2.9e-22 Identity = 52/80 (65.00%), Postives = 59/80 (73.75%), Query Frame = 0
BLAST of Carg21726-RA vs. TAIR10
Match: AT2G19460.1 (Protein of unknown function (DUF3511)) HSP 1 Score: 83.6 bits (205), Expect = 8.3e-17 Identity = 50/115 (43.48%), Postives = 69/115 (60.00%), Query Frame = 0
BLAST of Carg21726-RA vs. TAIR10
Match: AT1G72720.1 (Protein of unknown function (DUF3511)) HSP 1 Score: 64.7 bits (156), Expect = 4.0e-11 Identity = 32/62 (51.61%), Postives = 38/62 (61.29%), Query Frame = 0
BLAST of Carg21726-RA vs. TAIR10
Match: AT3G13910.1 (Protein of unknown function (DUF3511)) HSP 1 Score: 63.2 bits (152), Expect = 1.2e-10 Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 0
BLAST of Carg21726-RA vs. TAIR10
Match: AT2G47480.1 (Protein of unknown function (DUF3511)) HSP 1 Score: 61.6 bits (148), Expect = 3.4e-10 Identity = 37/101 (36.63%), Postives = 50/101 (49.50%), Query Frame = 0
BLAST of Carg21726-RA vs. TrEMBL
Match: tr|A0A0A0L414|A0A0A0L414_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G646210 PE=4 SV=1) HSP 1 Score: 166.4 bits (420), Expect = 3.5e-38 Identity = 84/112 (75.00%), Postives = 90/112 (80.36%), Query Frame = 0
BLAST of Carg21726-RA vs. TrEMBL
Match: tr|A0A1U8PUN1|A0A1U8PUN1_GOSHI (uncharacterized protein LOC107915042 OS=Gossypium hirsutum OX=3635 GN=LOC107962828 PE=4 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 2.6e-25 Identity = 70/116 (60.34%), Postives = 79/116 (68.10%), Query Frame = 0
BLAST of Carg21726-RA vs. TrEMBL
Match: tr|A0A2P5XPZ1|A0A2P5XPZ1_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA15255 PE=4 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 2.6e-25 Identity = 70/116 (60.34%), Postives = 79/116 (68.10%), Query Frame = 0
BLAST of Carg21726-RA vs. TrEMBL
Match: tr|A0A0D2SQF9|A0A0D2SQF9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G098600 PE=4 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 2.6e-25 Identity = 70/116 (60.34%), Postives = 79/116 (68.10%), Query Frame = 0
BLAST of Carg21726-RA vs. TrEMBL
Match: tr|A0A2K2A6G9|A0A2K2A6G9_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G225900v3 PE=4 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 8.4e-24 Identity = 72/130 (55.38%), Postives = 83/130 (63.85%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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