Carg21726-RA (mRNA) Silver-seed gourd

NameCarg21726-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDUF3511 domain-containing protein
LocationCucurbita_argyrosperma_scaffold_198 : 9145 .. 9468 (-)
Sequence length324
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATTACAGGTCGCATGGAAATGGGTTCGGCGGGGACATCAACACAGAGAGCACCTCCGCCACAAACCCTGGAAGCTCATACGAATTGAGGTCATATTCCGCGTCTTATGCGCAGACCCAGATGGAGACGAAGAAAGGGGAAAAGGGTTGTGGGTCTTTCCCCAAGTCTTGGAGCTTGTCGGACCCTGAATTTCAGAGGAAGAAGAGGGTTGCTAGCTACAAGATGTACTCTGTGGAAGGCAAAATGAAGGGGTCTTTCAGAAACAGCTTCCGATGGCTGAAGCGCAGATGCGAACAGGTGGTTTATGGGTGGTGGTGA

mRNA sequence

ATGGAAGATTACAGGTCGCATGGAAATGGGTTCGGCGGGGACATCAACACAGAGAGCACCTCCGCCACAAACCCTGGAAGCTCATACGAATTGAGGTCATATTCCGCGTCTTATGCGCAGACCCAGATGGAGACGAAGAAAGGGGAAAAGGGTTGTGGGTCTTTCCCCAAGTCTTGGAGCTTGTCGGACCCTGAATTTCAGAGGAAGAAGAGGGTTGCTAGCTACAAGATGTACTCTGTGGAAGGCAAAATGAAGGGGTCTTTCAGAAACAGCTTCCGATGGCTGAAGCGCAGATGCGAACAGGTGGTTTATGGGTGGTGGTGA

Coding sequence (CDS)

ATGGAAGATTACAGGTCGCATGGAAATGGGTTCGGCGGGGACATCAACACAGAGAGCACCTCCGCCACAAACCCTGGAAGCTCATACGAATTGAGGTCATATTCCGCGTCTTATGCGCAGACCCAGATGGAGACGAAGAAAGGGGAAAAGGGTTGTGGGTCTTTCCCCAAGTCTTGGAGCTTGTCGGACCCTGAATTTCAGAGGAAGAAGAGGGTTGCTAGCTACAAGATGTACTCTGTGGAAGGCAAAATGAAGGGGTCTTTCAGAAACAGCTTCCGATGGCTGAAGCGCAGATGCGAACAGGTGGTTTATGGGTGGTGGTGA

Protein sequence

MEDYRSHGNGFGGDINTESTSATNPGSSYELRSYSASYAQTQMETKKGEKGCGSFPKSWSLSDPEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKRRCEQVVYGWW
BLAST of Carg21726-RA vs. NCBI nr
Match: XP_022975771.1 (uncharacterized protein LOC111476369 [Cucurbita maxima])

HSP 1 Score: 206.8 bits (525), Expect = 3.6e-50
Identity = 100/107 (93.46%), Postives = 100/107 (93.46%), Query Frame = 0

Query: 1   MEDYRSHGNGFGGDINTESTSATNPGSSYELRSYSASYAQTQMETKKGEKGCGSFPKSWS 60
           MEDYRS GNGFGG INTES   TNPGSSYELRSYSASYAQTQME KKGEKGCGSFPKSWS
Sbjct: 1   MEDYRSRGNGFGGHINTESNYVTNPGSSYELRSYSASYAQTQMEMKKGEKGCGSFPKSWS 60

Query: 61  LSDPEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKRRCEQVVYGWW 108
           LSDPEFQRKKRVASYKMYSVEGKMKGS RNSFRWLKRRCEQVVYGWW
Sbjct: 61  LSDPEFQRKKRVASYKMYSVEGKMKGSIRNSFRWLKRRCEQVVYGWW 107

BLAST of Carg21726-RA vs. NCBI nr
Match: XP_022136638.1 (uncharacterized protein LOC111008293 [Momordica charantia] >XP_022158308.1 uncharacterized protein LOC111024820 [Momordica charantia])

HSP 1 Score: 168.7 bits (426), Expect = 1.1e-38
Identity = 84/112 (75.00%), Postives = 91/112 (81.25%), Query Frame = 0

Query: 1   MEDYRSHGNGFGGDINTESTSATNPGSSYELRSYSASYAQTQMET-----KKGEKGCGSF 60
           MEDYRS+GNGF GD NTE   A  P +SY+LRSYSASYAQTQME      KK +   GS 
Sbjct: 1   MEDYRSYGNGFSGDANTEGNYAAKPRNSYDLRSYSASYAQTQMEIKESQFKKAKTPSGSV 60

Query: 61  PKSWSLSDPEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKRRCEQVVYGWW 108
            KSWS +DPEFQRKKRVA+YKMYSVEGKMKGSFRNSFRWLKR+CEQVVYGWW
Sbjct: 61  SKSWSFADPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCEQVVYGWW 112

BLAST of Carg21726-RA vs. NCBI nr
Match: XP_011654415.1 (PREDICTED: uncharacterized protein LOC101210762 [Cucumis sativus] >KGN55347.1 hypothetical protein Csa_4G646210 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 5.3e-38
Identity = 84/112 (75.00%), Postives = 90/112 (80.36%), Query Frame = 0

Query: 1   MEDYRSHGNGFGGDINTESTSATNPGSSYELRSYSASYAQTQMET-----KKGEKGCGSF 60
           MEDYR HGNGF G  NTE   ATN  +SYELR+YSA+YAQTQME      KKG+   GS 
Sbjct: 1   MEDYRYHGNGFSGGNNTEFNYATNSRNSYELRTYSATYAQTQMEIRDSQFKKGKSHSGSV 60

Query: 61  PKSWSLSDPEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKRRCEQVVYGWW 108
            KSWS SDPEFQRKKRVA+YKMYSVEGKMKGSFRNSFRWLKR+CE VVYGWW
Sbjct: 61  SKSWSFSDPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCEHVVYGWW 112

BLAST of Carg21726-RA vs. NCBI nr
Match: XP_015884421.1 (uncharacterized protein LOC107420071 [Ziziphus jujuba] >XP_015902649.1 uncharacterized protein LOC107435530 [Ziziphus jujuba])

HSP 1 Score: 125.6 bits (314), Expect = 1.0e-25
Identity = 72/119 (60.50%), Postives = 84/119 (70.59%), Query Frame = 0

Query: 1   MEDY-RSHGNGFGGD-INTESTSATNPG--SSYELRSYSASYAQTQM--------ETKKG 60
           MEDY RS    +GG  +  E+     PG  +SY+LRSYSASY+QTQM        + KKG
Sbjct: 1   MEDYNRSKSYSYGGGMMQMETYYGPPPGAPTSYDLRSYSASYSQTQMGYNTNRDIKFKKG 60

Query: 61  EKGCGSFPKSWSLSDPEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKRRCEQVVYGWW 108
           +   GS  +SW+ +DPEFQRKKRVASYKMYSVEGKMKGSFR SFRWLK +  QVVYGWW
Sbjct: 61  KSTSGSSSRSWNFTDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQVVYGWW 119

BLAST of Carg21726-RA vs. NCBI nr
Match: XP_012452705.1 (PREDICTED: uncharacterized protein LOC105774692 [Gossypium raimondii] >XP_016754850.1 PREDICTED: uncharacterized protein LOC107962828 [Gossypium hirsutum] >XP_016699631.1 PREDICTED: uncharacterized protein LOC107915042 [Gossypium hirsutum] >XP_016699632.1 PREDICTED: uncharacterized protein LOC107915043 [Gossypium hirsutum] >XP_017636442.1 PREDICTED: uncharacterized protein LOC108478494 [Gossypium arboreum] >KJB65518.1 hypothetical protein B456_010G098600 [Gossypium raimondii] >PPS05404.1 hypothetical protein GOBAR_AA15255 [Gossypium barbadense] >PPS05405.1 hypothetical protein GOBAR_AA15256 [Gossypium barbadense] >PPS05406.1 hypothetical protein GOBAR_AA15257 [Gossypium barbadense])

HSP 1 Score: 123.6 bits (309), Expect = 4.0e-25
Identity = 70/116 (60.34%), Postives = 79/116 (68.10%), Query Frame = 0

Query: 1   MEDY---RSHGNGFGGDINTESTSATNPGSSYELRSYSASYAQTQM------ETKKGEKG 60
           MEDY   RS+G G    ++T       P S YELRSYS SYAQ+QM      + KKG+  
Sbjct: 1   MEDYNRSRSYGTGM-MQLDTYHGVPPRPSSGYELRSYSVSYAQSQMANNRDFKLKKGKST 60

Query: 61  CGSFPKSWSLSDPEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKRRCEQVVYGWW 108
             S  KSWS +DPEFQRKKRVASYKMYSVEGK+KGS R SFRWLK +  QVVYGWW
Sbjct: 61  SASSSKSWSFADPEFQRKKRVASYKMYSVEGKVKGSLRRSFRWLKVKYTQVVYGWW 115

BLAST of Carg21726-RA vs. TAIR10
Match: AT5G11970.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 101.7 bits (252), Expect = 2.9e-22
Identity = 52/80 (65.00%), Postives = 59/80 (73.75%), Query Frame = 0

Query: 30  ELRSYSASYA--QTQMETKKGEKGCGSFPKSWSLSDPEFQRKKRVASYKMYSVEGKMKGS 89
           + RSYSASY   +  +   K EK      KSW ++DPE QRKKRVASYKMY VEGK+KGS
Sbjct: 27  DFRSYSASYGTRENNIYDVKKEKSIAR-SKSWGITDPELQRKKRVASYKMYGVEGKVKGS 86

Query: 90  FRNSFRWLKRRCEQVVYGWW 108
           FRNSFRWLK+R  QVVYGWW
Sbjct: 87  FRNSFRWLKQRYTQVVYGWW 105

BLAST of Carg21726-RA vs. TAIR10
Match: AT2G19460.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 83.6 bits (205), Expect = 8.3e-17
Identity = 50/115 (43.48%), Postives = 69/115 (60.00%), Query Frame = 0

Query: 1   MEDY--RSHGNGFGGDINTESTSATNPG-------SSYELRSYSASYAQ--TQM-ETKKG 60
           MEDY  RS+G+G   D+   S    + G          +LRSYS SY    T++ E +  
Sbjct: 1   MEDYRSRSYGDGRTSDLQQYSAHRRSDGPDSFSGNGMQDLRSYSTSYTDYPTRIPEDQNP 60

Query: 61  EKGCGSFPKSWSLSDPEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKRRCEQVV 104
           +KG  S   SW   DP+ QRKKRV SY+ Y+VEGK+KGSFR SF+W+K +C +++
Sbjct: 61  KKGRSSSSSSWGFVDPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDKCNKLL 115

BLAST of Carg21726-RA vs. TAIR10
Match: AT1G72720.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 64.7 bits (156), Expect = 4.0e-11
Identity = 32/62 (51.61%), Postives = 38/62 (61.29%), Query Frame = 0

Query: 46  KKGEKGCGSFPKSWSLSDPEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKRRCEQVVYG 105
           KKG KG         L + E QRKKRVASY +Y VEG++KGS + SF+W K  C   VYG
Sbjct: 75  KKGFKG---------LCEAEIQRKKRVASYNVYGVEGRVKGSMKKSFKWFKETCSNAVYG 127

Query: 106 WW 108
            W
Sbjct: 135 LW 127

BLAST of Carg21726-RA vs. TAIR10
Match: AT3G13910.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-10
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 0

Query: 57 KSWSLSDPEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLK 97
          +SWS SDPE +RK+RVA YK+YSVE KMKGS R SF+W K
Sbjct: 57 RSWSFSDPESRRKRRVAGYKVYSVEQKMKGSIRKSFKWFK 96

BLAST of Carg21726-RA vs. TAIR10
Match: AT2G47480.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 61.6 bits (148), Expect = 3.4e-10
Identity = 37/101 (36.63%), Postives = 50/101 (49.50%), Query Frame = 0

Query: 4   YRSHGNGFGGDINTESTSATNPGSSYELRSYSASYAQTQMETKKGEKGCGSFPKSWSLSD 63
           Y S    +G D   E  S       Y  R Y  S      +   G     S  +   LSD
Sbjct: 9   YGSGQRTYGVDRRKEIVSGKR-NQIYGTRDYPPSLPPPPGKVAAGRSNASSSLRIGGLSD 68

Query: 64  PEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKRRCEQVVY 105
            E +RKKR+A YK Y+VEGK+K + +N FRW+K +C Q+V+
Sbjct: 69  AEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNKCCQIVH 108

BLAST of Carg21726-RA vs. TrEMBL
Match: tr|A0A0A0L414|A0A0A0L414_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G646210 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.5e-38
Identity = 84/112 (75.00%), Postives = 90/112 (80.36%), Query Frame = 0

Query: 1   MEDYRSHGNGFGGDINTESTSATNPGSSYELRSYSASYAQTQMET-----KKGEKGCGSF 60
           MEDYR HGNGF G  NTE   ATN  +SYELR+YSA+YAQTQME      KKG+   GS 
Sbjct: 1   MEDYRYHGNGFSGGNNTEFNYATNSRNSYELRTYSATYAQTQMEIRDSQFKKGKSHSGSV 60

Query: 61  PKSWSLSDPEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKRRCEQVVYGWW 108
            KSWS SDPEFQRKKRVA+YKMYSVEGKMKGSFRNSFRWLKR+CE VVYGWW
Sbjct: 61  SKSWSFSDPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCEHVVYGWW 112

BLAST of Carg21726-RA vs. TrEMBL
Match: tr|A0A1U8PUN1|A0A1U8PUN1_GOSHI (uncharacterized protein LOC107915042 OS=Gossypium hirsutum OX=3635 GN=LOC107962828 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.6e-25
Identity = 70/116 (60.34%), Postives = 79/116 (68.10%), Query Frame = 0

Query: 1   MEDY---RSHGNGFGGDINTESTSATNPGSSYELRSYSASYAQTQM------ETKKGEKG 60
           MEDY   RS+G G    ++T       P S YELRSYS SYAQ+QM      + KKG+  
Sbjct: 1   MEDYNRSRSYGTGM-MQLDTYHGVPPRPSSGYELRSYSVSYAQSQMANNRDFKLKKGKST 60

Query: 61  CGSFPKSWSLSDPEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKRRCEQVVYGWW 108
             S  KSWS +DPEFQRKKRVASYKMYSVEGK+KGS R SFRWLK +  QVVYGWW
Sbjct: 61  SASSSKSWSFADPEFQRKKRVASYKMYSVEGKVKGSLRRSFRWLKVKYTQVVYGWW 115

BLAST of Carg21726-RA vs. TrEMBL
Match: tr|A0A2P5XPZ1|A0A2P5XPZ1_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA15255 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.6e-25
Identity = 70/116 (60.34%), Postives = 79/116 (68.10%), Query Frame = 0

Query: 1   MEDY---RSHGNGFGGDINTESTSATNPGSSYELRSYSASYAQTQM------ETKKGEKG 60
           MEDY   RS+G G    ++T       P S YELRSYS SYAQ+QM      + KKG+  
Sbjct: 1   MEDYNRSRSYGTGM-MQLDTYHGVPPRPSSGYELRSYSVSYAQSQMANNRDFKLKKGKST 60

Query: 61  CGSFPKSWSLSDPEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKRRCEQVVYGWW 108
             S  KSWS +DPEFQRKKRVASYKMYSVEGK+KGS R SFRWLK +  QVVYGWW
Sbjct: 61  SASSSKSWSFADPEFQRKKRVASYKMYSVEGKVKGSLRRSFRWLKVKYTQVVYGWW 115

BLAST of Carg21726-RA vs. TrEMBL
Match: tr|A0A0D2SQF9|A0A0D2SQF9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G098600 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.6e-25
Identity = 70/116 (60.34%), Postives = 79/116 (68.10%), Query Frame = 0

Query: 1   MEDY---RSHGNGFGGDINTESTSATNPGSSYELRSYSASYAQTQM------ETKKGEKG 60
           MEDY   RS+G G    ++T       P S YELRSYS SYAQ+QM      + KKG+  
Sbjct: 1   MEDYNRSRSYGTGM-MQLDTYHGVPPRPSSGYELRSYSVSYAQSQMANNRDFKLKKGKST 60

Query: 61  CGSFPKSWSLSDPEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKRRCEQVVYGWW 108
             S  KSWS +DPEFQRKKRVASYKMYSVEGK+KGS R SFRWLK +  QVVYGWW
Sbjct: 61  SASSSKSWSFADPEFQRKKRVASYKMYSVEGKVKGSLRRSFRWLKVKYTQVVYGWW 115

BLAST of Carg21726-RA vs. TrEMBL
Match: tr|A0A2K2A6G9|A0A2K2A6G9_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G225900v3 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.4e-24
Identity = 72/130 (55.38%), Postives = 83/130 (63.85%), Query Frame = 0

Query: 1   MEDY---RSHGNGFGGD-INTESTSATN--PGSSYELRSYSASYAQTQM----------- 60
           MEDY   +S+    G D +  ES +     P SSYELRSYS SYAQTQ+           
Sbjct: 64  MEDYNRSKSYSYSHGNDMMQMESYNGPQRPPTSSYELRSYSTSYAQTQVANGNYNTNNFG 123

Query: 61  -----ETKKGEKGCG-SFPKSWSLSDPEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKR 108
                + KKG+   G S  KSWS  DPEFQRKKRVASYKMYSVEGK+KG+FR SFRW+K 
Sbjct: 124 NNRDFKAKKGKGYTGSSSSKSWSFDDPEFQRKKRVASYKMYSVEGKVKGTFRKSFRWIKD 183

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022975771.13.6e-5093.46uncharacterized protein LOC111476369 [Cucurbita maxima][more]
XP_022136638.11.1e-3875.00uncharacterized protein LOC111008293 [Momordica charantia] >XP_022158308.1 uncha... [more]
XP_011654415.15.3e-3875.00PREDICTED: uncharacterized protein LOC101210762 [Cucumis sativus] >KGN55347.1 hy... [more]
XP_015884421.11.0e-2560.50uncharacterized protein LOC107420071 [Ziziphus jujuba] >XP_015902649.1 uncharact... [more]
XP_012452705.14.0e-2560.34PREDICTED: uncharacterized protein LOC105774692 [Gossypium raimondii] >XP_016754... [more]
Match NameE-valueIdentityDescription
AT5G11970.12.9e-2265.00Protein of unknown function (DUF3511)[more]
AT2G19460.18.3e-1743.48Protein of unknown function (DUF3511)[more]
AT1G72720.14.0e-1151.61Protein of unknown function (DUF3511)[more]
AT3G13910.11.2e-1070.00Protein of unknown function (DUF3511)[more]
AT2G47480.13.4e-1036.63Protein of unknown function (DUF3511)[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L414|A0A0A0L414_CUCSA3.5e-3875.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G646210 PE=4 SV=1[more]
tr|A0A1U8PUN1|A0A1U8PUN1_GOSHI2.6e-2560.34uncharacterized protein LOC107915042 OS=Gossypium hirsutum OX=3635 GN=LOC1079628... [more]
tr|A0A2P5XPZ1|A0A2P5XPZ1_GOSBA2.6e-2560.34Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA15255 PE=4 SV... [more]
tr|A0A0D2SQF9|A0A0D2SQF9_GOSRA2.6e-2560.34Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G098600 PE=4 ... [more]
tr|A0A2K2A6G9|A0A2K2A6G9_POPTR8.4e-2455.38Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G225900v3 PE=... [more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR021899DUF3511
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg21726Carg21726gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg21726-RA.CDS.1Carg21726-RA.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg21726-RA.exon.1Carg21726-RA.exon.1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg21726-RACarg21726-RA-proteinpolypeptide


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021899Protein of unknown function DUF3511PFAMPF12023DUF3511coord: 62..105
e-value: 1.4E-25
score: 88.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availablePANTHERPTHR33193FAMILY NOT NAMEDcoord: 1..107
NoneNo IPR availablePANTHERPTHR33193:SF24SUBFAMILY NOT NAMEDcoord: 1..107