Carg21491-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21491-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	mediator of RNA polymerase II transcription subunit 16
Location	Cucurbita_argyrosperma_scaffold_146 : 202730 .. 214574 (+)
Sequence length	4409

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAATTGCGACTTTCCACCACTTACGTCCTCTCTCTCTCTCTCTCTCTCTTTCTATATAAATTAGGGTTGTCGTCTTTTCAATGAGTCAAGTTTCCAACGCTACGGAAGGGGAGGAAGAACCCCTGGTTCAGCCTTTGGAGCTTCCCAAAGGGTCTGACAAAACTGAAGTTGTGGCTGTTGAGGAGGAGGTTATGGAGAAACCCGAAGATCCAATGGACGAGGACTTGATCAGTCCGGCTACTGTTTTTCGAATCAAGCTCAAGCAGCCAAGATCCAATTTGCAGTACAAAATGAGTGTTCCTGAGCTCTGTCGCAATTTTAGGTTAGTTTTGCTTCTTGGGTTTTAACTTTTAGCTGCTGTTTATTTTATGGTTTTTGGATATTCATGCTCAACGAGTTGAGCTAGGAGTTGATACGTGCTTGGAATTGTATGATTATAGCGTTGAGGTGTAAATTGGGTATGCACTTCGTGCTTTTAGTTCCCATTTTTTTGTTTGATTTTTTATGGTAAATATTTCAATGGTTATGGCACGTGGAGAATTGGGTGCAATTGCTCCCATTTACTAGTTTCTCAATTCGGTGGGTTTATGCTTCAAGTTTTATCTTATAGGATTTAAGTTACTTCAAGGAGCTTCAATTTCATCCTTCTCTGCTGGTTTTCTTTTTTCAGTGCTGTTGCTTGGTGTGGTAAGCTGAATGCTATTGCCTGTGCATCGGAGACATGTGCAAGAATTCCAAGGTTAACATTCGTTTATCTTTTGATCACGTTTTGAACGAGTCATGTGGGTTCGTGGTTTCATCTCAGAGGAGCATACGATGAAATAAATCGTATCCCACCCCGAGCTATTTTCATTTCTAGAAATTGTTTGCTCTGCATACGCCAGGAATTGAAGGAATTTAGTTGTACAATTAATGTTCATCTTACAACTACAGCTACTCTATTTATGAAACACGTCCTGTAAATCAATGGCAAGAGAATTTTTTCCCCTTCTCCGGACATGGTGTCTAATATGTGATCCAAATAAAGGATTCTACTGCCGTTACCGTATCGATTAAACCTTGTTTCATATTTTGTCTTTGTATGATTTGTCTTCTAAGTGATTATATCTTTTGACAGTTCCAATGCAAACCCACCATTTTGGATCCCCATTCATATTGTGATTCCTGAGCGACCAACCGAGTGTGCCGTGTTTAATGTCATTGCAGGTATGGTGTATGCTAATGTGCTAATATACCTTACCGTTCCGTTACTCATTAACTTTATAGTGATATTTTACCGATGGAATCCTTACAACCACCAAGTATGGAGATTTTAGCATGTCTGTTTGTAAAGCTGGGGATCCAATAAACCTAGAATTTTTGGCTTTAGTAGTATTCTTTTGCTTGGCTTGCAGCTGTTATTTTATTTTGGTCGTAACAATCGTATCCTGGATTCTTTAGTTTATTTCTGCTGCGTATTTGGGTAGTTGGGCGGTTAGCTTGGTCCTTCCTCTGTATAGAGGGCCGGGCCTTTATTTTGAAAGTAGGGTACTGTTTTAAATAGAATTCCTTAGAGTTTTACAGTCTGATACATTGATTGACTGTAGTCCTTTGATTCTTGATTCTTGATAATCCTTCTCTACATTTTCTGGCCCTTGTATTGGTTTTTCATATCAGGATAACAGTTGGTGGCTATTTACATAGTCTAACGAGTAAAGAACTTGGGAGAAAGTTCAGTTTGTTTAGGACAATTGAATAGGAGAGGTATCACTGTCGGTAAAACACCATTATTTCAGGAAAAATAAAAAATAAATTAATTTTTATGATTTTCCCCCAGATGCATTTTATTTTCCTTATTCAAAATTTTAAAACGTTCTTGACATTTTCAATCAAATGTATTTCACATTCTGCAGATTCTCCACGTGATTCGGTACAATTTATTGAATGGTCACCAACTTCCTGTCCACGTGCTTTGCTTATAGCTAATTTCCATGGGAGGTCAACTATCTGGACTCAGCCATCTCGAGTAAGCTCAAATTTTATTTCTTTCTTTTGCAGAATTAAGATTTCAGAATGATTGATGTTTTTAAAGGTTCATGTCACGAACTTTGCCTATTAGTGGTCTTGCATGTGCTCTTGAACTATATATGTTTTTGGCTGCAAGCATGCATCTTTTCTTGTTTTAGTTTGTTTTACCGTTCTATTTTCCTCCAGGGTCCAGCTAACCTTGTACGTGATGCTAGCTGCTGGCAGCTTGAGCATGAATGGCGACAAGATATTGCAGTTGTTACGAAGTGGCTGTCAGGGTTGTCTGCAGTATGTTATTATCTATGATATGTAGTTTTAATGGTGCATTTACTTTCTAAGTTATGCTATTAGTTTGTAGGCTGCGATTAATTTTCCTTCTAGCAGTTTCATTAATTCTTTTATGGTGGGAAGTTGGTTGAAGTGTAAGGCCGATTTCTGCTATGAAAAATTTATGATGATGATTGTCCCTTCATAGCTTTTTCCCAGTTTGCTTGTTACTCTAAGGTTTAGACTTAAGATCAATCTAATAACCTTTCTAGAATTTAACTTCTTAGCAATTGTAAATGCTGCACAAGTACACTAACTCAAGCATAAAGGTAGTACTTGAAATTTCATTTGGTTTTGAATGATTCATTGGAGCTTCTCTATTATGTTAAATTTGTAATGAGAGGTTTACTCATACATCTATATGCATTTTTTTAATCAATCATGGCATTGCCTTGCATTCCCTCATTTTGGTGGTAATTATCGTTTCTTTTAGTTTCAATCGATTTCATACCTTAGGTCAATTGTCTTCTTTTTCATTTTGGCGACTACTTTCTGAATAATTTTTTAACATGTTCAAAATACCAGTATAGGTGGCTTTCAGCAAAATCTAGCTCATCAAACTCCAAGCCAAATTTTGAGGAAAAGTTTCTTCCACAGCAGTCGCAAACGTCAGGTTGCTCCGAACTTTAAATTATTTTCATATCATTTACGTTTGCTTGTATCTGATTCTACAGATTTGTAGCTCAGGATCCAGTTATCAACCTTGGAACATTTGATTCGCTGCTGCTCTGTGTTGTTTATAAAATTATCTAAATATATTTTTTTGTCCAATGTTCCTAAATGTCCACCTTGAATTAGCCCAATGATCAAAGGGCAAACTAGAAATCTATTTATTATTATTAATTTTTTGAGTTAATGAGTTCAAACCACAGTGCCATTTACCCTAGATATTAAATGTCCTACAAGTTTTTTGATAACAAATATTGGACGTTTTGGTTTTTGTCTTGTGGGAACTACCCAAGGTATATGTGCCCTTACTTGGGTACCCTGGTTTTTTTAAAAAAGAAAGAAATATATGTCCCGAATTTGTTGAATATTCTTAAGAGATGTCTAATGCAGTAATTTGCTTGTGTTTCAGCTAGGTGGCCAAATTTTCTTTGCGTTTGCTCGGTTTTCTCTTCAGGCTCTGTTCAACTTCATTGGTCCCAGTGGCCTTCTAGTCAAAATAGCTCACCATCAAAATGGTTCTGCACAAGTAAAGGACTATTGGGCGCTGGACCAAGTGGGATCATGGCTGCTGATGCCATCATAACAGATAGTGGTGCCATGCACGTGGCAGGGGTTCCAATTGTAAATCCATCCACTGTTGTTGTCTGGGAGGTTACTCCTGGCCCTGGAAATGGTTTTCAAGCCACTCCGAAGACAAGCACGAGCAATGGGGTCCCTGCTCCACTCAGTCCTCCTAATTGGTCTGGTTTTGCCCCATTGGCTGCATACCTGTTTAGCTGGCAAGAATTTTTATTATCTGAGTTAAAGCAAGGAAAAAATAAGACGCAAGATGTTAATGATAGTATTCCACTTCATTGTTCACCAGTTTCTAATTTTTCTGCATATGTCTCTCCTGAGGCTGCAGCTCAGTCTGCCACAACTACTACGTGGGGTTCTGGAGTTACTGCTGTTGCCTTTGATCCAACTCAGGGTGGCTCTGTTATAGCTATTGTAATAGTCGAGGGTAATTATCTGTACAATGAATTATAACTTAGCTTCTCATTCATATCCTGAAAACTTCATTAATTTTTTTGCTTTATTTTCCTGTGAGAGGAACTCTTTCACCATGTGGGAAGTGTGGACGTCTAGAAATGTATGCATTTTTTATGATGTGAGGGGATTGCTGGCTTGGTATAGAGCTTAATTAATAATACCTTTCCATGGGCTTTGATCTTCAAACGTTTTTGCAATTGCCTGCTTTTTCCCCCTTCCTTTTGGTAGCTGCAACCTCTTTCTTCTTTATTTTTGTTTGATCTTAATTCTTGTTTTTTGGGCAAAATCCATTATACAACCCAGTCCTTAATCTTATTGTTCCTTTATCGGTTAAAAGAAATTTAACCTTTTCCAATTAGTCCTTTTTACATTTCTCAGTCTGATGATCAATTACTCATGCAGGACAATACATGTCTCCTTATGATCCTGATGAAGGTCCTTCAATTTCTGGGTGGAGAGTGCAACGCTGGGAATCTTCACTTCAGCCTGTTGTTCTACATCAAATTTTTGGAAGTCCCACTGCCAGCTTTGGTGGTCAGGCACCCATGCAAACAGTTTGGTTATCTAAAGTGGACATGAGTATTTCACCAACTAGTGATTTTAAATCTAATCAATCAACAGCATCAGGACCAAACTCTGATCTACAGAAGTTGTCTGGAGCTTATGTTGATAAGGCAAAAAGAGTTTGTTTTGATCCATTTGATCTTCCCAGTGATGTTAGAACACTTGCTCGAATAGTGTATTCTGCTCATGGTGGCGAAATTGCTGTTGCTTTTCTCTGTGGTGGGGTGCATATTTTCTCTGGTCCAAACTTCGCTCCTGTTGAGAACTACCAGATCAATGTTGGACCAGCCATTGCGGCCCCTGCCTTTTCTTCCACTAGCTGCTGTTCAGCGTCTGTTTGGCATGAAGTGAATAAGGACTACACCATGTTGAAGATCATTCGTGTTCTTCCTCCTGCAGCTCCTAACAATCAGCTGAAGGCAAACTCTTCAACTTGGGAGCGTGCAGTTGCTGAAAGGTGACTTGATGGTGCTCATTCTTTGGTATTTCTTATAATCCAATGACAATATTATGTGCTACTTCTCCGCTGAAGTATTGGATGAGTTTTCTTGTCATGGTTCTGATTATGAATATTTATTGTTAATGTAGATTTTGGTGGAGCCTTCTTGTCGGTGTTGATTGGTGGGATGCTGTTGCCTGTACGCAGAGTGCTGCTGAAGATGGCATTGGTATGAATGATTGAGTTTTTTGTTATTGTCGCAACAGTAATGACAGTGCAAGTGAGAGGTCAAGATTCGTTTAAATAACACGATAGTTTTTGAAAGTCATTTCTAATCGATGAATATGTCATTTCAGTTTCTCCAAATAGCGTCATAGCAGTGTTGGATGCTGATTTTCATTCACTTCCTTCTAGCCAGCACAGGCAGCAGTATGGTCCTGTAAGTTCTATATTGTTTTGTTATCACCGAAAATAGCAATTTGAGTCTATTCGAACTATTTTTGCATTCAGCTACCCAGATCTCAGAGTGCACGCGATTTTTTGTTTTTTTTATTTGCATTTCTGGAGGCTTTTGTTCACTGATTTAAGCTACCTTATGAATCCATTATTTGTGTCTGTTTTTCTTTCTTTTATCTGATTGGAGGTTTGTACTGTGTTTGTTTCATTTTCTGGCTTATTCTGGTAATCCTTTATCACTTAAGTTGTGGGATAATTTACATCTAATGTGAAACTTCGAGATCAAGTTTGTTTCATGTGGTGGTTCCTGGTGTACCTTAGAACTTGTGAGTTATGGTGGCATCAAATGTTAAGTTTAATCCTGTTGATTGAAAATTGCTTTGAAACTGTTTTGTTGGCTACTTGATTTCGTGTTTTACTATGGAGGAATGCTATGGAAGAAAACTATTGTAAATATGTTATAAAGGAGGAGCAGGTTTCCTATCTCATGCTGTCCCTCTAGTTCTTGTAGCCCTTCATGTGGTGTTTTCCATTGTGAGAATATTTTTCGTTAAAAGTTCAGATTAAAGTGGATGGTGGCACTGGTAATTTGGGTTTGGTTGGACCCTTGGCCTGAAGTGGTTTCCCATAGGAGAAGTTTCCTTGGCCTTTTAGCTTGGCTTTGGATAAAAGAATCACAATGGAAGGGGCCTGGTGTGCTTCCTTGAGTTTCTGGCCAATCATCTTTAGAAAATACTTCTCGAGAATTCTTTGCTCTTATAGCTCTTCAGCTTCCCTTTCTCTCAAGACAGTGGTGCTAGTAATTGGCTTCTTGAAAAATCAGGGTTCTTCTCAGTGAAATCTTTGTTGTCCTGTCTTTCACAGGGTCCTCAAGTTGTCCAGTCGGCTCTATATTTAGGTCGGGTGAACATTATTGGCGAAGTACAACGAAGTTCTTCATGTTTGTTCCTACAACCGAACTTGTGCTGTTTATAAGGATTTTAGAACCAAGACCACCTGCTTCTTTTCTGCCCAGCAGCTTAAGACCTATGGTGCGAACTGTTGGGCTTTTCTTCAATAATCTTTTTTTATGCTCAGAAATGTGAGAGAATGACTTCTCTTAGACTTTGTGGTCTTAGCTTAAGGATAAAAGGCAACGTTTTGTTCATTAATAACTTCCCAAAGTTTCTTCAATGTTACTACTTTCTGGAACATGGATGAATGGTGGGATGAATCTGTCTTTGTTTCTATTTGTCGGTGTCTTAGGTTCTCTATGTCTTCGTTCAAGACCCTATTTGCACAGCCATTTTTGTTTATTTCATCGTGTTTTTATCTTAAAAGATATTCACATTGACCTTCCTCTCATTTTCTGAGTGCTGGTTAATCATATTGTAGAGAATCGTGACCTGTTTTCGTAACTGCCTACGTACTTATTTTCATTTTTTTTTTCTCTTGTCCACAAAACAGAGCTTGGACAGGATAAAATGTAGATTACTGGAAGGCACTAATGCCCAAGAAGTCAGGGCAATGGTTTTAGATATGCAAGCAAGATTGTTGCTGGATATGCTGGGCAAAGGAATTGAATCTGCTTTAATAAACCCGTCTGCTTTACTATCTGAGCCATGGCATGCATCCGGTGAAACATTATCCGGCATTGATCCTGAAGCAATGGCGGTAGAACCAGCACTGATCCCTAGCATTCAGGTTTGATTTGTCTAGCTTCAAATTTGTCCTTTATATATTTATTTCAGTAAAAAAGCTTGAGTATTGATGCATTCATAGGAACTTATGAAATGCTTTTGTCTTTCACCACGATAGCGTGGCTTGGGTATATTGGCCCTCCAAATATGCCTAGCCACTTTTTAGCAGAAAAGAGTGGCTATAGCTTTCTAATGACAATTGAACTGTGGGAAAGGGCATGAGTTAATTGCCCCTCTCTTTTACTTTTAGATTTATCAAAATCATCTCTTTCCCTTATTTTGAGGGTTGCAAAGTGATGCAGGCTTACGTTGATGCTGTCCTTGATCTTGCTTCACATTTCATTACACGTTTGCGACGTTATGCTAGTTTCTGTCGCACTTTGGCAAGTCATGCTGTTACAGCTGGAACTGGTAGCAACCGAAATATGGTAACTAGTCCTACCCAGAGTTCTGCATCTCCTGCGACAAGCCAGAGTGAGTTCACTCGATTTCCTTATATATGAATTGTTGAAAAAGAGATCTCTCTGTTATCTTCCCATATTGAAAATAGTAAAGTTTTCAGACTTCAGACGATTTGTTTCTTTATTTGTTCAGTTTTATTTATTTCTTTAAATTTTAAAATGTTTTAATAGTTTTGTTTGTTTATGAATGAATTTTATTTTATTTATTAATTAGCAGCTTTAAGATGGCTTATTTTCTTTGAACTTGCGGAGTTGATGCCTAGAAAACTCCTTTGTTGTTTTGTTCGAAAATGGAGGCATGATCACATCCAGGTTAATCTAGGTTGCATGTAATTTAAAATTTTTATCGCATGTTTCCAGGTGCTCAAAGCGGTACAACAAGTTCAGGAAGTACCCAGATGCAAGCTTGGGTACAAGGTGCGATTGCCAAAATTAGTAGCACAACTGATGGAGTAGCCAGTTCAACTCCAAACCCCATTAGTGGTTCATCTACCTTTATGCCAATAAGCATAAATACTGGAACTTTTCCTGGAACCCCAGCTGTTCGGCTTATTGGGGATTGCCATTTTTTACATAGATTATGCCAACTTTTGCTCTTCTGTTTTTTCTTTCGCCGAACACAGCTTCCCCGTTATATTAGTAATTCACAAAAAAATGCTGATGCAAACATCCAAAAGCCTCAACCCGCTGTTCCTGGGAAAGTGGAGGAGATTAGCTCCAATTCTGTCAAGCCAGTGCCAAATATAATTAAGCCTGAGGAAAGTCAAATAGCTCGAGCTGTTCCGCTTGTAACTGGAGCTAAAGGAGCTGAAGAAGGGCTTGCTGGTAGGTCAAGAATCGGTACAGGCAATGCTGGTCAAGGATATACTTCTGAGGAGGTAGAACAAGTTATTTTGTTTGAGTTTTGGTACAGATTATCTATTCCTTTCCTCCTTTTTAGGCTTCTTGGGATAATTCCTAGATTACCCGAGCTTTCTAGTTGGTGGTATTTACCATTGGTGGTATCGGCATCAGGGTGATTCTTTTTATTTGCAAGGATAGATCCTAATTTGGCATGAAGTTAATTAGGTGAGTTCATAATTTTAGTGTAAAAGAAGGCTTCAACTGCTTTAATTTTTACTCTGCAGGTGAAAGTCCTTTTCCTCATACTTATAGATCTTTGCCGCCGTACTGCTAGTCTTCCACATCCATTACCAGTCTCCCAGGTTGGGAGTAGTAATATCCAAGTGCGTCTGCATTATATTGACGGCAACTATACTGTATTACCTGAAGTTGTGGAAGCATCCCTTGGTCCACATATGCAGGTATTTAATGTTTGTTGCTTTCATGGATTACGGAGTTTGTATCTTATTTTCCCATAAAATGTTTTGTGGCAATGAGTTAAGGAATTGATACTTTTTATCCCATAATCATGAAAATGCTAATAATATATGTACTACTACTGTTATAACAGAAGACCAAATAGTTTCTTTGATTCTGTCACTTATCGCCCCCCTTGAGATGGTCAGAGAGACCGTATGGATAGTTGAAGATAATTTCTAACTTTGATGGTGGTTGGGCGTAGGTCTAACACTGAACATTGACCTAACATCTGCTGTGTAACTGGAAGTCCTCGAGTGTTTTATTATTATTATCATTATTAAATGGAGAAACAAACAGGAAGTCCTAGAGTTGACATTTACTTGTCGATCTAATTACAATCATATGACTACCTTTGTCCTCTGATTTTTTGTTGGGGCAACCTTTTGCAGCCCTTGTGCTTGTTTTTCATCGTTCCTCCGTTTTGTGCTTTAACCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCAAAATAATAATAATAATTTTCCTTCTGATGGTCTGGCTGCATAGAATATGCCCCGGCCTAGAGGTGCAGATGCTGCTGGTCTGTTGCTTCGGGAATTAGAACTTCACCCTCCAGCTGAAGAATGGCACAGGCGGAATATGTATGGTGGGCCTTGGTCTGATGTAGATGATTTGGGATCCACAGACGATAATTCCAAGCTTAGTAATTCGTCAGACCCACTTGATCTCAACTCATTGGAAAATTGCAATGTTTATTATGGAGCTAATGGTTTGTGGCCTAGAAAGCGCAGGATGTCTGAAAGAGATGCTGCTTTTGGCTTGAATACGTCCATTGGTCTCGGAGCATACCTAGGTATAATGGGATCTCGTAGAGACGTTGTGACTGCTGTCTGGAAGACTGGTCTTGAAGGGGTTTGGTATAAGGTCCGATATGTAGTTCCCTTCTTACTCTTCTCATATTATTTCAATGATTCAAGTACAGTGACGTTTCTTTTGAAGTATTGAGACCTTGAGAGACATTGATAGGTTGAAGACAATAAAAATTACATTCCAAAATCTCCTACATATTTAGTTCAATAAAAAGGATAATTTTTTTTTTCTCGCTTAAATTGTGTCAGTATTTTTAAAATTTATTCAACTCTAGAAGCAGAAGCCAATGAGTTATTTTGCAATAATACCTGTTTGCTGCAACATGCTTCTAGATTTAAATGGCGTCATGTTTATGGTGTATTACTTTAAATTTAGAAGGATTGACTACTTCTACAGACTATACGTTGCTAATCTTTGTGTTGTATTCATTGTGAATCTTCCGACTTTGTGATTTGCAGTGCATGAGATGTTTGAGGCAGACATCAGCCTTTGCTTCACCTGGTGCTACTAATGATACTACTCAAAACGAGAGGGAGACTTGGTGGATTAGCCGATGGGCTTATGGATGCCCAATGTGTGGTGGAACATGGGTTCGAGTAGTATAGTTATGCCTTGCCATGTACAACCCTGGCTTCAACAATAGGGTCGCAATACTCACTTTCATCCAGTGATGTTCATTGTGTCATTTATAATTTTGCAGACCAAAATTTTAAAATGTCCTTTCCTTAAGTTCATGCAATCAAATTGCTTCATTTGATAAAATATGGTTACATCAGATAGGGGATACAGTTGCACGAGTTAGAGGATGAACTGCATTTCACCTTGTTTAGCACTGCCTGTGCCAGCTCTTCTCACCGTAAGGTATGTTTATTTGATTTTCTGTTCTCTGAATTTTCTAATTTGGAAAATAGTTCATTTTTCCAGTTTCCACGCTGTTATTGAAATTAACCTCCGGGAAGTTGGGTACTATCTGGTCTTCTAACTCTTTATTCTGCCTCTAGAAGATAAATAGAAAGGGAATTAGAAAGTAGAAAAGTAGCTATTGAATAGACATCAAAAGAGACTGAAGGAGCCTCATTAACTGAAAGTCCTGATTATTTTGAACTAAGGAGCTGTCCTAAATGCCATTGGTTAAATGAAAATGTGCCGTAAGTACTAATATAATTTGAGTAGCAGATTGAGGGACTAATGGTTATGGCTCTCTTTTTTGTTTGATAGGTTATGAGAGGAAATATGGATGTAGGGGAATCCTGTTTCCTTCACTGTTCTATCTTTCAAATTCTTGATGGAAATAAATGAATGTTGAAAGTGTCATCTTTTACGTGTGTTTTGTGCCTGATACACAAATTACCAATACACTGTACAACCAATAAAAGTTTTTATTCTTATTGAGAAATGACCAACTGCAGGAGATATGCACCTTACAGTTTTGTTGCTCTTTGGTTCTCCACCTTTAATTTTAAACCTCTTTGAAATTACAGGTTGGAGTTTCTCTTGCGTATGGGGAGCTTGACGAGTGCCATTATTATCTTGTTCATAAAAATTCTCAGTACAGTGACCAATAACAAGAAGAATGTCCAGCTTAGAAGGCAAGATATTAGTTAATTTCATGGGAAGTAGATACCTGATTCATTGCCATCAGAGTGGGAGGTGGGGGCAGCGGGGCGTGTAGCTGAGGCAGAGTATTTTAGTTTTGTACATGGTAGACCAGTGTTGTTTCAGAAGAGTCGAGCATGGAGATAGACGATGGAAGCCTTAAGGCCTCCTTAGGCTGCAGTTGTACACGTATAATTGATAATATTAGCGCCACCTGGATGACAGTGGCTTGCATGACTTGTGTAGAAATAGACACTACAAAAAATATGAATTTTTGCATAGATTATTTGAACAGAACAGTACGACTCCATTTACTTGCTACCCTCATGATTCATGAGAAAGATGACATCCCTCATTAAAAGCTTGTAGTATGCAGGCTTTGGCGTAATTTTTTCTAATGTAATTTGTTAATTATTTAACT

mRNA sequence

TCAATTGCGACTTTCCACCACTTACGTCCTCTCTCTCTCTCTCTCTCTCTTTCTATATAAATTAGGGTTGTCGTCTTTTCAATGAGTCAAGTTTCCAACGCTACGGAAGGGGAGGAAGAACCCCTGGTTCAGCCTTTGGAGCTTCCCAAAGGGTCTGACAAAACTGAAGTTGTGGCTGTTGAGGAGGAGGTTATGGAGAAACCCGAAGATCCAATGGACGAGGACTTGATCAGTCCGGCTACTGTTTTTCGAATCAAGCTCAAGCAGCCAAGATCCAATTTGCAGTACAAAATGAGTGTTCCTGAGCTCTGTCGCAATTTTAGTGCTGTTGCTTGGTGTGGTAAGCTGAATGCTATTGCCTGTGCATCGGAGACATGTGCAAGAATTCCAAGTTCCAATGCAAACCCACCATTTTGGATCCCCATTCATATTGTGATTCCTGAGCGACCAACCGAGTGTGCCGTGTTTAATGTCATTGCAGATTCTCCACGTGATTCGGTACAATTTATTGAATGGTCACCAACTTCCTGTCCACGTGCTTTGCTTATAGCTAATTTCCATGGGAGGTCAACTATCTGGACTCAGCCATCTCGAGGTCCAGCTAACCTTGTACGTGATGCTAGCTGCTGGCAGCTTGAGCATGAATGGCGACAAGATATTGCAGTTGTTACGAAGTGGCTGTCAGGGTTGTCTGCATATAGGTGGCTTTCAGCAAAATCTAGCTCATCAAACTCCAAGCCAAATTTTGAGGAAAAGTTTCTTCCACAGCAGTCGCAAACGTCAGCTAGGTGGCCAAATTTTCTTTGCGTTTGCTCGGTTTTCTCTTCAGGCTCTGTTCAACTTCATTGGTCCCAGTGGCCTTCTAGTCAAAATAGCTCACCATCAAAATGGTTCTGCACAAGTAAAGGACTATTGGGCGCTGGACCAAGTGGGATCATGGCTGCTGATGCCATCATAACAGATAGTGGTGCCATGCACGTGGCAGGGGTTCCAATTGTAAATCCATCCACTGTTGTTGTCTGGGAGGTTACTCCTGGCCCTGGAAATGGTTTTCAAGCCACTCCGAAGACAAGCACGAGCAATGGGGTCCCTGCTCCACTCAGTCCTCCTAATTGGTCTGGTTTTGCCCCATTGGCTGCATACCTGTTTAGCTGGCAAGAATTTTTATTATCTGAGTTAAAGCAAGGAAAAAATAAGACGCAAGATGTTAATGATAGTATTCCACTTCATTGTTCACCAGTTTCTAATTTTTCTGCATATGTCTCTCCTGAGGCTGCAGCTCAGTCTGCCACAACTACTACGTGGGGTTCTGGAGTTACTGCTGTTGCCTTTGATCCAACTCAGGGTGGCTCTGTTATAGCTATTGTAATAGTCGAGGGACAATACATGTCTCCTTATGATCCTGATGAAGGTCCTTCAATTTCTGGGTGGAGAGTGCAACGCTGGGAATCTTCACTTCAGCCTGTTGTTCTACATCAAATTTTTGGAAGTCCCACTGCCAGCTTTGGTGGTCAGGCACCCATGCAAACAGTTTGGTTATCTAAAGTGGACATGAGTATTTCACCAACTAGTGATTTTAAATCTAATCAATCAACAGCATCAGGACCAAACTCTGATCTACAGAAGTTGTCTGGAGCTTATGTTGATAAGGCAAAAAGAGTTTGTTTTGATCCATTTGATCTTCCCAGTGATGTTAGAACACTTGCTCGAATAGTGTATTCTGCTCATGGTGGCGAAATTGCTGTTGCTTTTCTCTGTGGTGGGGTGCATATTTTCTCTGGTCCAAACTTCGCTCCTGTTGAGAACTACCAGATCAATGTTGGACCAGCCATTGCGGCCCCTGCCTTTTCTTCCACTAGCTGCTGTTCAGCGTCTGTTTGGCATGAAGTGAATAAGGACTACACCATGTTGAAGATCATTCGTGTTCTTCCTCCTGCAGCTCCTAACAATCAGCTGAAGGCAAACTCTTCAACTTGGGAGCGTGCAGTTGCTGAAAGATTTTGGTGGAGCCTTCTTGTCGGTGTTGATTGGTGGGATGCTGTTGCCTGTACGCAGAGTGCTGCTGAAGATGGCATTGTTTCTCCAAATAGCGTCATAGCAGTGTTGGATGCTGATTTTCATTCACTTCCTTCTAGCCAGCACAGGCAGCAGTATGGTCCTAGCTTGGACAGGATAAAATGTAGATTACTGGAAGGCACTAATGCCCAAGAAGTCAGGGCAATGGTTTTAGATATGCAAGCAAGATTGTTGCTGGATATGCTGGGCAAAGGAATTGAATCTGCTTTAATAAACCCGTCTGCTTTACTATCTGAGCCATGGCATGCATCCGGTGAAACATTATCCGGCATTGATCCTGAAGCAATGGCGGTAGAACCAGCACTGATCCCTAGCATTCAGGGTTGCAAAGTGATGCAGGCTTACGTTGATGCTGTCCTTGATCTTGCTTCACATTTCATTACACGTTTGCGACGTTATGCTAGTTTCTGTCGCACTTTGGCAAGTCATGCTGTTACAGCTGGAACTGGTAGCAACCGAAATATGGTAACTAGTCCTACCCAGAGTTCTGCATCTCCTGCGACAAGCCAGAGTGCTCAAAGCGGTACAACAAGTTCAGGAAGTACCCAGATGCAAGCTTGGGTACAAGGTGCGATTGCCAAAATTAGTAGCACAACTGATGGAGTAGCCAGTTCAACTCCAAACCCCATTAGTGGTTCATCTACCTTTATGCCAATAAGCATAAATACTGGAACTTTTCCTGGAACCCCAGCTGTTCGGCTTATTGGGGATTGCCATTTTTTACATAGATTATGCCAACTTTTGCTCTTCTGTTTTTTCTTTCGCCGAACACAGCTTCCCCGTTATATTAGTAATTCACAAAAAAATGCTGATGCAAACATCCAAAAGCCTCAACCCGCTGTTCCTGGGAAAGTGGAGGAGATTAGCTCCAATTCTGTCAAGCCAGTGCCAAATATAATTAAGCCTGAGGAAAGTCAAATAGCTCGAGCTGTTCCGCTTGTAACTGGAGCTAAAGGAGCTGAAGAAGGGCTTGCTGGTAGGTCAAGAATCGGTACAGGCAATGCTGGTCAAGGATATACTTCTGAGGAGGTGAAAGTCCTTTTCCTCATACTTATAGATCTTTGCCGCCGTACTGCTAGTCTTCCACATCCATTACCAGTCTCCCAGGTTGGGAGTAGTAATATCCAAGTGCGTCTGCATTATATTGACGGCAACTATACTGTATTACCTGAAGTTGTGGAAGCATCCCTTGGTCCACATATGCAGAATATGCCCCGGCCTAGAGGTGCAGATGCTGCTGGTCTGTTGCTTCGGGAATTAGAACTTCACCCTCCAGCTGAAGAATGGCACAGGCGGAATATGTATGGTGGGCCTTGGTCTGATGTAGATGATTTGGGATCCACAGACGATAATTCCAAGCTTAGTAATTCGTCAGACCCACTTGATCTCAACTCATTGGAAAATTGCAATGTTTATTATGGAGCTAATGGTTTGTGGCCTAGAAAGCGCAGGATGTCTGAAAGAGATGCTGCTTTTGGCTTGAATACGTCCATTGGTCTCGGAGCATACCTAGGTATAATGGGATCTCGTAGAGACGTTGTGACTGCTGTCTGGAAGACTGGTCTTGAAGGGGTTTGGTATAAGTGCATGAGATGTTTGAGGCAGACATCAGCCTTTGCTTCACCTGGTGCTACTAATGATACTACTCAAAACGAGAGGGAGACTTGGTGGATTAGCCGATGGGCTTATGGATGCCCAATGTGTGGTGGAACATGGGGGATACAGTTGCACGAGTTAGAGGATGAACTGCATTTCACCTTGTTTAGCACTGCCTGTGCCAGCTCTTCTCACCGTAAGGTTGGAGTTTCTCTTGCGTATGGGGAGCTTGACGAGTGCCATTATTATCTTGTTCATAAAAATTCTCAGTACAGTGACCAATAACAAGAAGAATGTCCAGCTTAGAAGGCAAGATATTAGTTAATTTCATGGGAAGTAGATACCTGATTCATTGCCATCAGAGTGGGAGGTGGGGGCAGCGGGGCGTGTAGCTGAGGCAGAGTATTTTAGTTTTGTACATGGTAGACCAGTGTTGTTTCAGAAGAGTCGAGCATGGAGATAGACGATGGAAGCCTTAAGGCCTCCTTAGGCTGCAGTTGTACACGTATAATTGATAATATTAGCGCCACCTGGATGACAGTGGCTTGCATGACTTGTGTAGAAATAGACACTACAAAAAATATGAATTTTTGCATAGATTATTTGAACAGAACAGTACGACTCCATTTACTTGCTACCCTCATGATTCATGAGAAAGATGACATCCCTCATTAAAAGCTTGTAGTATGCAGGCTTTGGCGTAATTTTTTCTAATGTAATTTGTTAATTATTTAACT

Coding sequence (CDS)

ATGAGTCAAGTTTCCAACGCTACGGAAGGGGAGGAAGAACCCCTGGTTCAGCCTTTGGAGCTTCCCAAAGGGTCTGACAAAACTGAAGTTGTGGCTGTTGAGGAGGAGGTTATGGAGAAACCCGAAGATCCAATGGACGAGGACTTGATCAGTCCGGCTACTGTTTTTCGAATCAAGCTCAAGCAGCCAAGATCCAATTTGCAGTACAAAATGAGTGTTCCTGAGCTCTGTCGCAATTTTAGTGCTGTTGCTTGGTGTGGTAAGCTGAATGCTATTGCCTGTGCATCGGAGACATGTGCAAGAATTCCAAGTTCCAATGCAAACCCACCATTTTGGATCCCCATTCATATTGTGATTCCTGAGCGACCAACCGAGTGTGCCGTGTTTAATGTCATTGCAGATTCTCCACGTGATTCGGTACAATTTATTGAATGGTCACCAACTTCCTGTCCACGTGCTTTGCTTATAGCTAATTTCCATGGGAGGTCAACTATCTGGACTCAGCCATCTCGAGGTCCAGCTAACCTTGTACGTGATGCTAGCTGCTGGCAGCTTGAGCATGAATGGCGACAAGATATTGCAGTTGTTACGAAGTGGCTGTCAGGGTTGTCTGCATATAGGTGGCTTTCAGCAAAATCTAGCTCATCAAACTCCAAGCCAAATTTTGAGGAAAAGTTTCTTCCACAGCAGTCGCAAACGTCAGCTAGGTGGCCAAATTTTCTTTGCGTTTGCTCGGTTTTCTCTTCAGGCTCTGTTCAACTTCATTGGTCCCAGTGGCCTTCTAGTCAAAATAGCTCACCATCAAAATGGTTCTGCACAAGTAAAGGACTATTGGGCGCTGGACCAAGTGGGATCATGGCTGCTGATGCCATCATAACAGATAGTGGTGCCATGCACGTGGCAGGGGTTCCAATTGTAAATCCATCCACTGTTGTTGTCTGGGAGGTTACTCCTGGCCCTGGAAATGGTTTTCAAGCCACTCCGAAGACAAGCACGAGCAATGGGGTCCCTGCTCCACTCAGTCCTCCTAATTGGTCTGGTTTTGCCCCATTGGCTGCATACCTGTTTAGCTGGCAAGAATTTTTATTATCTGAGTTAAAGCAAGGAAAAAATAAGACGCAAGATGTTAATGATAGTATTCCACTTCATTGTTCACCAGTTTCTAATTTTTCTGCATATGTCTCTCCTGAGGCTGCAGCTCAGTCTGCCACAACTACTACGTGGGGTTCTGGAGTTACTGCTGTTGCCTTTGATCCAACTCAGGGTGGCTCTGTTATAGCTATTGTAATAGTCGAGGGACAATACATGTCTCCTTATGATCCTGATGAAGGTCCTTCAATTTCTGGGTGGAGAGTGCAACGCTGGGAATCTTCACTTCAGCCTGTTGTTCTACATCAAATTTTTGGAAGTCCCACTGCCAGCTTTGGTGGTCAGGCACCCATGCAAACAGTTTGGTTATCTAAAGTGGACATGAGTATTTCACCAACTAGTGATTTTAAATCTAATCAATCAACAGCATCAGGACCAAACTCTGATCTACAGAAGTTGTCTGGAGCTTATGTTGATAAGGCAAAAAGAGTTTGTTTTGATCCATTTGATCTTCCCAGTGATGTTAGAACACTTGCTCGAATAGTGTATTCTGCTCATGGTGGCGAAATTGCTGTTGCTTTTCTCTGTGGTGGGGTGCATATTTTCTCTGGTCCAAACTTCGCTCCTGTTGAGAACTACCAGATCAATGTTGGACCAGCCATTGCGGCCCCTGCCTTTTCTTCCACTAGCTGCTGTTCAGCGTCTGTTTGGCATGAAGTGAATAAGGACTACACCATGTTGAAGATCATTCGTGTTCTTCCTCCTGCAGCTCCTAACAATCAGCTGAAGGCAAACTCTTCAACTTGGGAGCGTGCAGTTGCTGAAAGATTTTGGTGGAGCCTTCTTGTCGGTGTTGATTGGTGGGATGCTGTTGCCTGTACGCAGAGTGCTGCTGAAGATGGCATTGTTTCTCCAAATAGCGTCATAGCAGTGTTGGATGCTGATTTTCATTCACTTCCTTCTAGCCAGCACAGGCAGCAGTATGGTCCTAGCTTGGACAGGATAAAATGTAGATTACTGGAAGGCACTAATGCCCAAGAAGTCAGGGCAATGGTTTTAGATATGCAAGCAAGATTGTTGCTGGATATGCTGGGCAAAGGAATTGAATCTGCTTTAATAAACCCGTCTGCTTTACTATCTGAGCCATGGCATGCATCCGGTGAAACATTATCCGGCATTGATCCTGAAGCAATGGCGGTAGAACCAGCACTGATCCCTAGCATTCAGGGTTGCAAAGTGATGCAGGCTTACGTTGATGCTGTCCTTGATCTTGCTTCACATTTCATTACACGTTTGCGACGTTATGCTAGTTTCTGTCGCACTTTGGCAAGTCATGCTGTTACAGCTGGAACTGGTAGCAACCGAAATATGGTAACTAGTCCTACCCAGAGTTCTGCATCTCCTGCGACAAGCCAGAGTGCTCAAAGCGGTACAACAAGTTCAGGAAGTACCCAGATGCAAGCTTGGGTACAAGGTGCGATTGCCAAAATTAGTAGCACAACTGATGGAGTAGCCAGTTCAACTCCAAACCCCATTAGTGGTTCATCTACCTTTATGCCAATAAGCATAAATACTGGAACTTTTCCTGGAACCCCAGCTGTTCGGCTTATTGGGGATTGCCATTTTTTACATAGATTATGCCAACTTTTGCTCTTCTGTTTTTTCTTTCGCCGAACACAGCTTCCCCGTTATATTAGTAATTCACAAAAAAATGCTGATGCAAACATCCAAAAGCCTCAACCCGCTGTTCCTGGGAAAGTGGAGGAGATTAGCTCCAATTCTGTCAAGCCAGTGCCAAATATAATTAAGCCTGAGGAAAGTCAAATAGCTCGAGCTGTTCCGCTTGTAACTGGAGCTAAAGGAGCTGAAGAAGGGCTTGCTGGTAGGTCAAGAATCGGTACAGGCAATGCTGGTCAAGGATATACTTCTGAGGAGGTGAAAGTCCTTTTCCTCATACTTATAGATCTTTGCCGCCGTACTGCTAGTCTTCCACATCCATTACCAGTCTCCCAGGTTGGGAGTAGTAATATCCAAGTGCGTCTGCATTATATTGACGGCAACTATACTGTATTACCTGAAGTTGTGGAAGCATCCCTTGGTCCACATATGCAGAATATGCCCCGGCCTAGAGGTGCAGATGCTGCTGGTCTGTTGCTTCGGGAATTAGAACTTCACCCTCCAGCTGAAGAATGGCACAGGCGGAATATGTATGGTGGGCCTTGGTCTGATGTAGATGATTTGGGATCCACAGACGATAATTCCAAGCTTAGTAATTCGTCAGACCCACTTGATCTCAACTCATTGGAAAATTGCAATGTTTATTATGGAGCTAATGGTTTGTGGCCTAGAAAGCGCAGGATGTCTGAAAGAGATGCTGCTTTTGGCTTGAATACGTCCATTGGTCTCGGAGCATACCTAGGTATAATGGGATCTCGTAGAGACGTTGTGACTGCTGTCTGGAAGACTGGTCTTGAAGGGGTTTGGTATAAGTGCATGAGATGTTTGAGGCAGACATCAGCCTTTGCTTCACCTGGTGCTACTAATGATACTACTCAAAACGAGAGGGAGACTTGGTGGATTAGCCGATGGGCTTATGGATGCCCAATGTGTGGTGGAACATGGGGGATACAGTTGCACGAGTTAGAGGATGAACTGCATTTCACCTTGTTTAGCACTGCCTGTGCCAGCTCTTCTCACCGTAAGGTTGGAGTTTCTCTTGCGTATGGGGAGCTTGACGAGTGCCATTATTATCTTGTTCATAAAAATTCTCAGTACAGTGACCAATAA

Protein sequence

MSQVSNATEGEEEPLVQPLELPKGSDKTEVVAVEEEVMEKPEDPMDEDLISPATVFRIKLKQPRSNLQYKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRSTIWTQPSRGPANLVRDASCWQLEHEWRQDIAVVTKWLSGLSAYRWLSAKSSSSNSKPNFEEKFLPQQSQTSARWPNFLCVCSVFSSGSVQLHWSQWPSSQNSSPSKWFCTSKGLLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQATPKTSTSNGVPAPLSPPNWSGFAPLAAYLFSWQEFLLSELKQGKNKTQDVNDSIPLHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTAVAFDPTQGGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPVVLHQIFGSPTASFGGQAPMQTVWLSKVDMSISPTSDFKSNQSTASGPNSDLQKLSGAYVDKAKRVCFDPFDLPSDVRTLARIVYSAHGGEIAVAFLCGGVHIFSGPNFAPVENYQINVGPAIAAPAFSSTSCCSASVWHEVNKDYTMLKIIRVLPPAAPNNQLKANSSTWERAVAERFWWSLLVGVDWWDAVACTQSAAEDGIVSPNSVIAVLDADFHSLPSSQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMAVEPALIPSIQGCKVMQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVTSPTQSSASPATSQSAQSGTTSSGSTQMQAWVQGAIAKISSTTDGVASSTPNPISGSSTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLPRYISNSQKNADANIQKPQPAVPGKVEEISSNSVKPVPNIIKPEESQIARAVPLVTGAKGAEEGLAGRSRIGTGNAGQGYTSEEVKVLFLILIDLCRRTASLPHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMYGGPWSDVDDLGSTDDNSKLSNSSDPLDLNSLENCNVYYGANGLWPRKRRMSERDAAFGLNTSIGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCMRCLRQTSAFASPGATNDTTQNERETWWISRWAYGCPMCGGTWGIQLHELEDELHFTLFSTACASSSHRKVGVSLAYGELDECHYYLVHKNSQYSDQ

Homology

[Close]

BLAST of Carg21491-RA vs. NCBI nr
Match: XP_023519315.1 (mediator of RNA polymerase II transcription subunit 16 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 2437.5 bits (6316), Expect = 0.0e+00
Identity = 1227/1237 (99.19%), Postives = 1229/1237 (99.35%), Query Frame = 0


Query: 1    MSQVSNATEGEEEPLVQPLELPKGSDKTEVVAVEEEVMEKPEDPMDEDLISPATVFRIKL 60
            MSQVSNATEGEEEPLVQPLELPKGSDKTEVVAVEEEVMEKPEDPMDEDLISPATVFRIKL
Sbjct: 1    MSQVSNATEGEEEPLVQPLELPKGSDKTEVVAVEEEVMEKPEDPMDEDLISPATVFRIKL 60

Query: 61   KQPRSNLQYKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIP 120
            KQPRSNLQYKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIP
Sbjct: 61   KQPRSNLQYKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIP 120

Query: 121  ERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRSTIWTQPSRGPANLVRDA 180
            ERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRSTIWTQPSRGPANLVRDA
Sbjct: 121  ERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRSTIWTQPSRGPANLVRDA 180

Query: 181  SCWQLEHEWRQDIAVVTKWLSGLSAYRWLSAKSSSSNSKPNFEEKFLPQQSQTSARWPNF 240
            SCWQLEHEWRQDIAVVTKWLSGLSAYRWLSAKSSSSNSKPNFEEKFLPQQSQTSARWPNF
Sbjct: 181  SCWQLEHEWRQDIAVVTKWLSGLSAYRWLSAKSSSSNSKPNFEEKFLPQQSQTSARWPNF 240

Query: 241  LCVCSVFSSGSVQLHWSQWPSSQNSSPSKWFCTSKGLLGAGPSGIMAADAIITDSGAMHV 300
            LCVCSVFSSGSVQLHWSQWPSSQNSSPSKWFCTSKGLLGAGPSGIMAADAIITDSGAMHV
Sbjct: 241  LCVCSVFSSGSVQLHWSQWPSSQNSSPSKWFCTSKGLLGAGPSGIMAADAIITDSGAMHV 300

Query: 301  AGVPIVNPSTVVVWEVTPGPGNGFQATPKTSTSNGVPAPLSPPNWSGFAPLAAYLFSWQE 360
            AGVPIVNPSTVVVWEVTPGPGNGFQATPKTSTSNGVPAPLSPPNWSGFAPLAAYLFSWQE
Sbjct: 301  AGVPIVNPSTVVVWEVTPGPGNGFQATPKTSTSNGVPAPLSPPNWSGFAPLAAYLFSWQE 360

Query: 361  FLLSELKQGKNKTQDVNDSIPLHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTAVAFDPT 420
            FLLSELKQGKNKTQDVNDSIPLHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTAVAFDPT
Sbjct: 361  FLLSELKQGKNKTQDVNDSIPLHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTAVAFDPT 420

Query: 421  QGGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPVVLHQIFGSPTASFGGQAP 480
            QGGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPVVLHQIFGSPTASFGGQAP
Sbjct: 421  QGGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPVVLHQIFGSPTASFGGQAP 480

Query: 481  MQTVWLSKVDMSISPTSDFKSNQSTASGPNSDLQKLSGAYVDKAKRVCFDPFDLPSDVRT 540
            MQTVWLSKVDMSISPTSDFKSNQSTASGPNSDLQKLSGAYVDKAKRVCFDPFDLPSDVRT
Sbjct: 481  MQTVWLSKVDMSISPTSDFKSNQSTASGPNSDLQKLSGAYVDKAKRVCFDPFDLPSDVRT 540

Query: 541  LARIVYSAHGGEIAVAFLCGGVHIFSGPNFAPVENYQINVGPAIAAPAFSSTSCCSASVW 600
            LARIVYSAHGGEIAVAFLCGGVHIFSGPNFAPVENYQINVGPAIAAPAFSSTSCCSASVW
Sbjct: 541  LARIVYSAHGGEIAVAFLCGGVHIFSGPNFAPVENYQINVGPAIAAPAFSSTSCCSASVW 600

Query: 601  HEVNKDYTMLKIIRVLPPAAPNNQLKANSSTWERAVAERFWWSLLVGVDWWDAVACTQSA 660
            HEVNKDYTMLKIIRVLPPAAPNNQLKANSSTWERA+AERFWWSLLVGVDWWDAVACTQSA
Sbjct: 601  HEVNKDYTMLKIIRVLPPAAPNNQLKANSSTWERAIAERFWWSLLVGVDWWDAVACTQSA 660

Query: 661  AEDGIVSPNSVIAVLDADFHSLPSSQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQA 720
            AEDGIVSPNSVIAVLDADFHSLPSSQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQA
Sbjct: 661  AEDGIVSPNSVIAVLDADFHSLPSSQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQA 720

Query: 721  RLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMAVEPALIPSIQGCKVMQAY 780
            RLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMAVEPALIPSI      QAY
Sbjct: 721  RLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMAVEPALIPSI------QAY 780

Query: 781  VDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVTSPTQSXXXXXXXXXXXXX 840
            VDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVTSPTQ XXXXXXXXXXXXX
Sbjct: 781  VDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVTSPTQXXXXXXXXXXXXXX 840

Query: 841  XXXXXXTQMQAWVQGAIAKISSTTDGVASSTPNPISGSSTFMPISINTGTFPGTPAVRLI 900
            XXXXXX QMQAWVQGAIAKISSTTDGV+SSTPNPISGSSTFMPISINTGTFPGTPAVRLI
Sbjct: 841  XXXXXXXQMQAWVQGAIAKISSTTDGVSSSTPNPISGSSTFMPISINTGTFPGTPAVRLI 900

Query: 901  GDCHFLHRLCQLLLFCFFFRRTQLPRYISNSQKNADANIQKPQPAVPGKVEEISSNSVKP 960
            GDCHFLHRLCQLLLFCFFFRRTQLPRYISNSQKNADANIQKPQPAVPGKVEEISSNSVKP
Sbjct: 901  GDCHFLHRLCQLLLFCFFFRRTQLPRYISNSQKNADANIQKPQPAVPGKVEEISSNSVKP 960

Query: 961  VPNIIKPEESQIARAVPLVTGAKGAEEGLAGRSRIGTGNAGQGYTSEEVKVLFLILIDLC 1020
            VPNIIKPEESQIARAVPLVTGAKGAEEGLAGRSRIGTGNAGQGYTSEEVKVLFLILIDLC
Sbjct: 961  VPNIIKPEESQIARAVPLVTGAKGAEEGLAGRSRIGTGNAGQGYTSEEVKVLFLILIDLC 1020

Query: 1021 RRTASLPHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGL 1080
            RRTASLPHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGL
Sbjct: 1021 RRTASLPHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGL 1080

Query: 1081 LLRELELHPPAEEWHRRNMYGGPWSDVDDLGSTDDNSKLSNSSDPLDLNSLENCNVYYGA 1140
            LLRELELHPPAEEWHRRNMYGGPWSDVDDLGSTDDNSKLSNSSDPLDLNSLENCNVYYGA
Sbjct: 1081 LLRELELHPPAEEWHRRNMYGGPWSDVDDLGSTDDNSKLSNSSDPLDLNSLENCNVYYGA 1140

Query: 1141 NGLWPRKRRMSERDAAFGLNTSIGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCMRCLRQ 1200
            NGLWPRKRRMSERDAAFGLNTSIGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCMRCLRQ
Sbjct: 1141 NGLWPRKRRMSERDAAFGLNTSIGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCMRCLRQ 1200

Query: 1201 TSAFASPGATNDTTQNERETWWISRWAYGCPMCGGTW 1238
            TSAFASPGATNDTTQNERETWWISRWAYGCPMCGGTW
Sbjct: 1201 TSAFASPGATNDTTQNERETWWISRWAYGCPMCGGTW 1231

[Close]

BLAST of Carg21491-RA vs. NCBI nr
Match: XP_022927009.1 (mediator of RNA polymerase II transcription subunit 16 [Cucurbita moschata])

HSP 1 Score: 2435.2 bits (6310), Expect = 0.0e+00
Identity = 1225/1237 (99.03%), Postives = 1230/1237 (99.43%), Query Frame = 0


Query: 1    MSQVSNATEGEEEPLVQPLELPKGSDKTEVVAVEEEVMEKPEDPMDEDLISPATVFRIKL 60
            MSQVSNATEGEEEPLVQPLELPKGSDKTEVVAVEE+VMEKPEDPMDEDLISPATVFRIKL
Sbjct: 1    MSQVSNATEGEEEPLVQPLELPKGSDKTEVVAVEEQVMEKPEDPMDEDLISPATVFRIKL 60

Query: 61   KQPRSNLQYKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIP 120
            KQPRSNLQYKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIP
Sbjct: 61   KQPRSNLQYKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIP 120

Query: 121  ERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRSTIWTQPSRGPANLVRDA 180
            ERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRSTIWTQPSRGPANLVRDA
Sbjct: 121  ERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRSTIWTQPSRGPANLVRDA 180

Query: 181  SCWQLEHEWRQDIAVVTKWLSGLSAYRWLSAKSSSSNSKPNFEEKFLPQQSQTSARWPNF 240
            SCWQLEHEWRQDIAVVTKWLSGLSAYRWLSAKSSSSNSKPNFEEKFLPQQSQTSARWPNF
Sbjct: 181  SCWQLEHEWRQDIAVVTKWLSGLSAYRWLSAKSSSSNSKPNFEEKFLPQQSQTSARWPNF 240

Query: 241  LCVCSVFSSGSVQLHWSQWPSSQNSSPSKWFCTSKGLLGAGPSGIMAADAIITDSGAMHV 300
            LCVCSVFSSGSVQLHWSQWPSS NSSPSKWFCTSKGLLGAGPSGIMAADAIITDSGAMHV
Sbjct: 241  LCVCSVFSSGSVQLHWSQWPSSLNSSPSKWFCTSKGLLGAGPSGIMAADAIITDSGAMHV 300

Query: 301  AGVPIVNPSTVVVWEVTPGPGNGFQATPKTSTSNGVPAPLSPPNWSGFAPLAAYLFSWQE 360
            AGVPIVNPSTVVVWEVTPGPGNGFQATPKTSTSNGVPAPLSPPNWSGFAPLAAYLFSWQE
Sbjct: 301  AGVPIVNPSTVVVWEVTPGPGNGFQATPKTSTSNGVPAPLSPPNWSGFAPLAAYLFSWQE 360

Query: 361  FLLSELKQGKNKTQDVNDSIPLHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTAVAFDPT 420
            FLLSELKQGKNKTQDVNDSIPLHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTAVAFDPT
Sbjct: 361  FLLSELKQGKNKTQDVNDSIPLHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTAVAFDPT 420

Query: 421  QGGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPVVLHQIFGSPTASFGGQAP 480
            QGGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPVVLHQIFGSPTASFGGQAP
Sbjct: 421  QGGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPVVLHQIFGSPTASFGGQAP 480

Query: 481  MQTVWLSKVDMSISPTSDFKSNQSTASGPNSDLQKLSGAYVDKAKRVCFDPFDLPSDVRT 540
            MQTVWLSKVDMSISPTSDFKSNQSTASGPNSDLQKLSGAYVDKAKRVCFDPFDLPSDVRT
Sbjct: 481  MQTVWLSKVDMSISPTSDFKSNQSTASGPNSDLQKLSGAYVDKAKRVCFDPFDLPSDVRT 540

Query: 541  LARIVYSAHGGEIAVAFLCGGVHIFSGPNFAPVENYQINVGPAIAAPAFSSTSCCSASVW 600
            LARIVYSAHGGEIAVAFLCGGVHIFSGPNFAPVENYQINVGPAIAAPAFSSTSCCSASVW
Sbjct: 541  LARIVYSAHGGEIAVAFLCGGVHIFSGPNFAPVENYQINVGPAIAAPAFSSTSCCSASVW 600

Query: 601  HEVNKDYTMLKIIRVLPPAAPNNQLKANSSTWERAVAERFWWSLLVGVDWWDAVACTQSA 660
            HEVNKDYTMLKIIRVLPPA+PNNQLKANSSTWERA+AERFWWSLLVGVDWWDAVACTQSA
Sbjct: 601  HEVNKDYTMLKIIRVLPPASPNNQLKANSSTWERAIAERFWWSLLVGVDWWDAVACTQSA 660

Query: 661  AEDGIVSPNSVIAVLDADFHSLPSSQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQA 720
            AEDGIVSPNSVIAVLDADFHSLPSSQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQA
Sbjct: 661  AEDGIVSPNSVIAVLDADFHSLPSSQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQA 720

Query: 721  RLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMAVEPALIPSIQGCKVMQAY 780
            RLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMAVEPALIPSI      QAY
Sbjct: 721  RLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMAVEPALIPSI------QAY 780

Query: 781  VDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVTSPTQSXXXXXXXXXXXXX 840
            VDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVTSPTQSXXXXXXXXXXXXX
Sbjct: 781  VDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVTSPTQSXXXXXXXXXXXXX 840

Query: 841  XXXXXXTQMQAWVQGAIAKISSTTDGVASSTPNPISGSSTFMPISINTGTFPGTPAVRLI 900
            XXXXXXTQMQAWVQGAIAKISSTTDGV+SS+PNPISGSSTFMPISINTGTFPGTPAVRLI
Sbjct: 841  XXXXXXTQMQAWVQGAIAKISSTTDGVSSSSPNPISGSSTFMPISINTGTFPGTPAVRLI 900

Query: 901  GDCHFLHRLCQLLLFCFFFRRTQLPRYISNSQKNADANIQKPQPAVPGKVEEISSNSVKP 960
            GDCHFLHRLCQLLLFCFFFRRTQLPRYISNSQKNADANIQKPQPAVPGKVEEISSNSVKP
Sbjct: 901  GDCHFLHRLCQLLLFCFFFRRTQLPRYISNSQKNADANIQKPQPAVPGKVEEISSNSVKP 960

Query: 961  VPNIIKPEESQIARAVPLVTGAKGAEEGLAGRSRIGTGNAGQGYTSEEVKVLFLILIDLC 1020
            VPNIIKPEESQIARAVPLVTGAKGAEEGLAGRSRIGTGNAGQGYTSEEVKVLFLILIDLC
Sbjct: 961  VPNIIKPEESQIARAVPLVTGAKGAEEGLAGRSRIGTGNAGQGYTSEEVKVLFLILIDLC 1020

Query: 1021 RRTASLPHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGL 1080
            RRTASLPHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGL
Sbjct: 1021 RRTASLPHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGL 1080

Query: 1081 LLRELELHPPAEEWHRRNMYGGPWSDVDDLGSTDDNSKLSNSSDPLDLNSLENCNVYYGA 1140
            LLRELELHPPAEEWHRRNMYGGPWSDVDDLGSTDDNSKLSNSSDPLDLNSLENCNVYYGA
Sbjct: 1081 LLRELELHPPAEEWHRRNMYGGPWSDVDDLGSTDDNSKLSNSSDPLDLNSLENCNVYYGA 1140

Query: 1141 NGLWPRKRRMSERDAAFGLNTSIGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCMRCLRQ 1200
            NGLWPRKRRMSERDAAFGLNTSIGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCMRCLRQ
Sbjct: 1141 NGLWPRKRRMSERDAAFGLNTSIGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCMRCLRQ 1200

Query: 1201 TSAFASPGATNDTTQNERETWWISRWAYGCPMCGGTW 1238
            TSAFASPGATNDTTQNERETWWISRWAYGCPMCGGTW
Sbjct: 1201 TSAFASPGATNDTTQNERETWWISRWAYGCPMCGGTW 1231

[Close]

BLAST of Carg21491-RA vs. NCBI nr
Match: XP_023001689.1 (mediator of RNA polymerase II transcription subunit 16 [Cucurbita maxima])

HSP 1 Score: 2427.1 bits (6289), Expect = 0.0e+00
Identity = 1221/1237 (98.71%), Postives = 1226/1237 (99.11%), Query Frame = 0


Query: 1    MSQVSNATEGEEEPLVQPLELPKGSDKTEVVAVEEEVMEKPEDPMDEDLISPATVFRIKL 60
            MSQVSNATEGEEEPLVQPLELPKGSDKTEVVAVEEEVMEKPEDPMDEDLISPATVFRIKL
Sbjct: 1    MSQVSNATEGEEEPLVQPLELPKGSDKTEVVAVEEEVMEKPEDPMDEDLISPATVFRIKL 60

Query: 61   KQPRSNLQYKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIP 120
            KQPRSNLQYKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIP
Sbjct: 61   KQPRSNLQYKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIP 120

Query: 121  ERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRSTIWTQPSRGPANLVRDA 180
            ERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRSTIWTQPSRGPANLVRDA
Sbjct: 121  ERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRSTIWTQPSRGPANLVRDA 180

Query: 181  SCWQLEHEWRQDIAVVTKWLSGLSAYRWLSAKSSSSNSKPNFEEKFLPQQSQTSARWPNF 240
            SCWQLEHEWRQDIAVVTKWLSGLSAYRWLSAKSSSSNSKPNFEEKFLPQQSQTSARWPNF
Sbjct: 181  SCWQLEHEWRQDIAVVTKWLSGLSAYRWLSAKSSSSNSKPNFEEKFLPQQSQTSARWPNF 240

Query: 241  LCVCSVFSSGSVQLHWSQWPSSQNSSPSKWFCTSKGLLGAGPSGIMAADAIITDSGAMHV 300
            LCVCSV+SSGSVQLHWSQWPSSQNSSPSKWFCTSKGLLGAGPSGIMAADAIITDSGAMHV
Sbjct: 241  LCVCSVYSSGSVQLHWSQWPSSQNSSPSKWFCTSKGLLGAGPSGIMAADAIITDSGAMHV 300

Query: 301  AGVPIVNPSTVVVWEVTPGPGNGFQATPKTSTSNGVPAPLSPPNWSGFAPLAAYLFSWQE 360
            AGVPIVNPSTVVVWEVTPGPGNGFQATPKTS+SNGVPAPLSPPNWSGFAPLAAYLFSWQE
Sbjct: 301  AGVPIVNPSTVVVWEVTPGPGNGFQATPKTSSSNGVPAPLSPPNWSGFAPLAAYLFSWQE 360

Query: 361  FLLSELKQGKNKTQDVNDSIPLHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTAVAFDPT 420
            FLLSELKQGKNKTQDVNDSIPLHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTAVAFDPT
Sbjct: 361  FLLSELKQGKNKTQDVNDSIPLHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTAVAFDPT 420

Query: 421  QGGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPVVLHQIFGSPTASFGGQAP 480
            QGGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPVVLHQIFGSPTASFGGQAP
Sbjct: 421  QGGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPVVLHQIFGSPTASFGGQAP 480

Query: 481  MQTVWLSKVDMSISPTSDFKSNQSTASGPNSDLQKLSGAYVDKAKRVCFDPFDLPSDVRT 540
            MQTVWLSKVDMSISPTSDFKSNQSTASGPNSDLQKLSGAYVDKAKRVCFDPFDLPSDVRT
Sbjct: 481  MQTVWLSKVDMSISPTSDFKSNQSTASGPNSDLQKLSGAYVDKAKRVCFDPFDLPSDVRT 540

Query: 541  LARIVYSAHGGEIAVAFLCGGVHIFSGPNFAPVENYQINVGPAIAAPAFSSTSCCSASVW 600
            LARIVYSAHGGEIAVAFLCGGVHIFSGPNFAPVENYQINVGPAIAAPAFSSTSCCSASVW
Sbjct: 541  LARIVYSAHGGEIAVAFLCGGVHIFSGPNFAPVENYQINVGPAIAAPAFSSTSCCSASVW 600

Query: 601  HEVNKDYTMLKIIRVLPPAAPNNQLKANSSTWERAVAERFWWSLLVGVDWWDAVACTQSA 660
            HEVNKDYTMLKIIRVLPPAAPNNQLKAN STWERA+AERFWWSLLVGVDWWDAVACTQSA
Sbjct: 601  HEVNKDYTMLKIIRVLPPAAPNNQLKANPSTWERAIAERFWWSLLVGVDWWDAVACTQSA 660

Query: 661  AEDGIVSPNSVIAVLDADFHSLPSSQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQA 720
            AEDGIVSPNSVIAVLDADFHSL SSQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQA
Sbjct: 661  AEDGIVSPNSVIAVLDADFHSLSSSQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQA 720

Query: 721  RLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMAVEPALIPSIQGCKVMQAY 780
            RLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMAVEPALIPSI      QAY
Sbjct: 721  RLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMAVEPALIPSI------QAY 780

Query: 781  VDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVTSPTQSXXXXXXXXXXXXX 840
            VDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVTSPTQ XXXXXXXXXXXXX
Sbjct: 781  VDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVTSPTQXXXXXXXXXXXXXX 840

Query: 841  XXXXXXTQMQAWVQGAIAKISSTTDGVASSTPNPISGSSTFMPISINTGTFPGTPAVRLI 900
            XXXXXX QMQAWVQGAIAKISSTTDGV+SSTPNPISGSSTFMPISINTGTFPGTPAVRLI
Sbjct: 841  XXXXXXXQMQAWVQGAIAKISSTTDGVSSSTPNPISGSSTFMPISINTGTFPGTPAVRLI 900

Query: 901  GDCHFLHRLCQLLLFCFFFRRTQLPRYISNSQKNADANIQKPQPAVPGKVEEISSNSVKP 960
            GDCHFLHRLCQLLLFCFFFRRTQLPRYISNSQKNADANIQKPQP VPGKVEEISSNSVKP
Sbjct: 901  GDCHFLHRLCQLLLFCFFFRRTQLPRYISNSQKNADANIQKPQPTVPGKVEEISSNSVKP 960

Query: 961  VPNIIKPEESQIARAVPLVTGAKGAEEGLAGRSRIGTGNAGQGYTSEEVKVLFLILIDLC 1020
            VPNIIKPEESQI+RAVPLVTGAKGAEEGLAGRSRIGTGNAGQGYTSEEVKVLFLILIDLC
Sbjct: 961  VPNIIKPEESQISRAVPLVTGAKGAEEGLAGRSRIGTGNAGQGYTSEEVKVLFLILIDLC 1020

Query: 1021 RRTASLPHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGL 1080
            RRTASLPHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGL
Sbjct: 1021 RRTASLPHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGL 1080

Query: 1081 LLRELELHPPAEEWHRRNMYGGPWSDVDDLGSTDDNSKLSNSSDPLDLNSLENCNVYYGA 1140
            LLRELELHPPAEEWHRRNMYGGPWSDVDDLGSTDDNSKLSNSSDPLDLNSLENCNVYYGA
Sbjct: 1081 LLRELELHPPAEEWHRRNMYGGPWSDVDDLGSTDDNSKLSNSSDPLDLNSLENCNVYYGA 1140

Query: 1141 NGLWPRKRRMSERDAAFGLNTSIGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCMRCLRQ 1200
            NGLWPRKRRMSERDAAFGLNTSIGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCMRCLRQ
Sbjct: 1141 NGLWPRKRRMSERDAAFGLNTSIGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCMRCLRQ 1200

Query: 1201 TSAFASPGATNDTTQNERETWWISRWAYGCPMCGGTW 1238
            TSAFASPGATNDTTQNERETWWISRWAYGCPMCGGTW
Sbjct: 1201 TSAFASPGATNDTTQNERETWWISRWAYGCPMCGGTW 1231

[Close]

BLAST of Carg21491-RA vs. NCBI nr
Match: XP_008442342.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 16 [Cucumis melo])

HSP 1 Score: 2337.4 bits (6056), Expect = 0.0e+00
Identity = 1170/1239 (94.43%), Postives = 1200/1239 (96.85%), Query Frame = 0


Query: 1    MSQVSNATEGEEEPLVQPLELPKGSDKTEVVAVEEEVMEKPEDPMDEDLISPATVFRIKL 60
            M+QVSNATEGEE+P VQPLELPK SDKTE +  +EEVMEKP+D MDEDL++PATVFRIKL
Sbjct: 1    MTQVSNATEGEEQPQVQPLELPKVSDKTEPLPAQEEVMEKPDDSMDEDLVTPATVFRIKL 60

Query: 61   KQPRSNLQYKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIP 120
            KQPRSNLQ+KMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIP
Sbjct: 61   KQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIP 120

Query: 121  ERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRSTIWTQPSRGPANLVRDA 180
            ERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGR+TIWTQPSRGPANLVRDA
Sbjct: 121  ERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRTTIWTQPSRGPANLVRDA 180

Query: 181  SCWQLEHEWRQDIAVVTKWLSGLSAYRWLSAKSSSSNSKPNFEEKFLPQQSQTSARWPNF 240
            SCWQLEHEWRQDIAVVTKWLSGLSAYRWLS+KS+SSNSKPNFEEKFLPQQSQTSARWPNF
Sbjct: 181  SCWQLEHEWRQDIAVVTKWLSGLSAYRWLSSKSNSSNSKPNFEEKFLPQQSQTSARWPNF 240

Query: 241  LCVCSVFSSGSVQLHWSQWPSSQNSSPSKWFCTSKGLLGAGPSGIMAADAIITDSGAMHV 300
            LCVCSVFSSGSVQLHWSQWP SQNSSP KWFCTSKGLLGAGPSGIMAADAIITDSGAMHV
Sbjct: 241  LCVCSVFSSGSVQLHWSQWPPSQNSSPPKWFCTSKGLLGAGPSGIMAADAIITDSGAMHV 300

Query: 301  AGVPIVNPSTVVVWEVTPGPGNGFQATPKTSTSNGVPAPLSPPNWSGFAPLAAYLFSWQE 360
            AGVPIVNPSTVVVWEVTPGPGNGFQATPKT+TSNGVPAPLSPPNWSGFAPLAAYLFSWQE
Sbjct: 301  AGVPIVNPSTVVVWEVTPGPGNGFQATPKTNTSNGVPAPLSPPNWSGFAPLAAYLFSWQE 360

Query: 361  FLLSELKQGKNKT-QDVNDSIPLHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTAVAFDP 420
            FLLSELKQGK +T QDVND+IPLHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTAVAFDP
Sbjct: 361  FLLSELKQGKKQTDQDVNDTIPLHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTAVAFDP 420

Query: 421  TQGGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPVVLHQIFGSPTASFGGQA 480
            T+GGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPVVLHQIFGSPTASF GQA
Sbjct: 421  TRGGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPVVLHQIFGSPTASFSGQA 480

Query: 481  PMQTVWLSKVDMSISPTSDFKSNQSTASGPNSDLQKLSGAYVDKAKRVCFDPFDLPSDVR 540
            P QTVWLSKVD SISPTSDFKSNQS  SGPNSDL+KLSGAY+DKAK+VCFDPFDLPSDVR
Sbjct: 481  PTQTVWLSKVDTSISPTSDFKSNQSAVSGPNSDLRKLSGAYIDKAKKVCFDPFDLPSDVR 540

Query: 541  TLARIVYSAHGGEIAVAFLCGGVHIFSGPNFAPVENYQINVGPAIAAPAFSSTSCCSASV 600
            TLARIVYSAHGGEIAVAFLCGGVH+FSGPNFAPVENYQINVGPAIAAPAFSSTSCCSASV
Sbjct: 541  TLARIVYSAHGGEIAVAFLCGGVHVFSGPNFAPVENYQINVGPAIAAPAFSSTSCCSASV 600

Query: 601  WHEVNKDYTMLKIIRVLPPAAPNNQLKANSSTWERAVAERFWWSLLVGVDWWDAVACTQS 660
            WH+VNKD TML+IIRVLPPAAP+NQLKANSSTWERA+AERFWWSLLVGVDWWDAV CTQS
Sbjct: 601  WHDVNKDCTMLRIIRVLPPAAPSNQLKANSSTWERAIAERFWWSLLVGVDWWDAVGCTQS 660

Query: 661  AAEDGIVSPNSVIAVLDADFHSLPSSQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQ 720
            AAEDGIVSPNSVIAVLDADFHSLPSSQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQ
Sbjct: 661  AAEDGIVSPNSVIAVLDADFHSLPSSQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQ 720

Query: 721  ARLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMAVEPALIPSIQGCKVMQA 780
            ARLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMAVEPALIPSI      QA
Sbjct: 721  ARLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMAVEPALIPSI------QA 780

Query: 781  YVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVTSPT-QSXXXXXXXXXXX 840
            YVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRN+V SPT  S   XXXXXXXX
Sbjct: 781  YVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNIVASPTPSSASPXXXXXXXX 840

Query: 841  XXXXXXXXTQMQAWVQGAIAKISSTTDGVASSTPNPISGSSTFMPISINTGTFPGTPAVR 900
            XXXXXXXX  MQAWVQGAIAKISSTTDGV SSTPNPISGSSTFMPISINTGTFPGTPAVR
Sbjct: 841  XXXXXXXXXXMQAWVQGAIAKISSTTDGVTSSTPNPISGSSTFMPISINTGTFPGTPAVR 900

Query: 901  LIGDCHFLHRLCQLLLFCFFFRRTQLPRYISNSQKNADANIQKPQPAVPGKVEEISSNSV 960
            LIGDCHFLHRLCQLLLFCFFFRRTQLPRYI NSQ+NADANIQKPQPAVPGKVEEI+SNSV
Sbjct: 901  LIGDCHFLHRLCQLLLFCFFFRRTQLPRYIGNSQRNADANIQKPQPAVPGKVEEINSNSV 960

Query: 961  KPVPNIIKPEESQIARAVPLVTGAKGAEEGLAGRSRIGTGNAGQGYTSEEVKVLFLILID 1020
            KPV NI+KP+ESQI RA  LVTGAKGAEEGLAGRSRIGTGNAGQGYTSEEVKVLFLILID
Sbjct: 961  KPVQNIVKPDESQIVRASQLVTGAKGAEEGLAGRSRIGTGNAGQGYTSEEVKVLFLILID 1020

Query: 1021 LCRRTASLPHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAA 1080
            LCRRTASLPHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAA
Sbjct: 1021 LCRRTASLPHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAA 1080

Query: 1081 GLLLRELELHPPAEEWHRRNMYGGPWSDVDDLGSTDDNSKLSNSSDPLDLNSLENCNVYY 1140
            GLLLRELELHPPAEEWHRRNMYGGPWSDVDDLG  DD+SKLSNSSDPLDLNSLENCNVYY
Sbjct: 1081 GLLLRELELHPPAEEWHRRNMYGGPWSDVDDLGPNDDSSKLSNSSDPLDLNSLENCNVYY 1140

Query: 1141 GANGLWPRKRRMSERDAAFGLNTSIGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCMRCL 1200
            GANGLWPRKRRMSERDAAFGLNTSIGLGA+LGIMGSRRDVVTAVWKTGLEGVWYKCMRCL
Sbjct: 1141 GANGLWPRKRRMSERDAAFGLNTSIGLGAFLGIMGSRRDVVTAVWKTGLEGVWYKCMRCL 1200

Query: 1201 RQTSAFASPGATNDTTQNERETWWISRWAYGCPMCGGTW 1238
            RQTSAFASPGATNDTTQNERETWWISRWAYGCPMCGGTW
Sbjct: 1201 RQTSAFASPGATNDTTQNERETWWISRWAYGCPMCGGTW 1233

[Close]

BLAST of Carg21491-RA vs. NCBI nr
Match: XP_011653115.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 16 [Cucumis sativus] >KGN64664.1 hypothetical protein Csa_1G073710 [Cucumis sativus])

HSP 1 Score: 2326.6 bits (6028), Expect = 0.0e+00
Identity = 1166/1239 (94.11%), Postives = 1197/1239 (96.61%), Query Frame = 0


Query: 1    MSQVSNATEGEEEPLVQPLELPKGSDKTEVVAVEEEVMEKPEDPMDEDLISPATVFRIKL 60
            M+QVSNATEGEE+P VQPLELPK SDKTE +  +EEVMEKP+D MDEDL++PATVFRIKL
Sbjct: 1    MTQVSNATEGEEQPQVQPLELPKVSDKTEPLPAQEEVMEKPDDAMDEDLVTPATVFRIKL 60

Query: 61   KQPRSNLQYKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIP 120
            KQPRSNLQ+KMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIP
Sbjct: 61   KQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIP 120

Query: 121  ERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRSTIWTQPSRGPANLVRDA 180
            ERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGR+TIWTQPSRGPANLVRDA
Sbjct: 121  ERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRTTIWTQPSRGPANLVRDA 180

Query: 181  SCWQLEHEWRQDIAVVTKWLSGLSAYRWLSAKSSSSNSKPNFEEKFLPQQSQTSARWPNF 240
            SCWQLEHEWRQDIAVVTKWLSGLSAYRWLS+KS+SSNSKPNFEEKFLPQQSQTSARWPNF
Sbjct: 181  SCWQLEHEWRQDIAVVTKWLSGLSAYRWLSSKSNSSNSKPNFEEKFLPQQSQTSARWPNF 240

Query: 241  LCVCSVFSSGSVQLHWSQWPSSQNSSPSKWFCTSKGLLGAGPSGIMAADAIITDSGAMHV 300
            LCVCSVFSSGSVQLHWSQWP SQNSSP KWFCTSKGLLGAGPSGIMAADAIITDSGAMHV
Sbjct: 241  LCVCSVFSSGSVQLHWSQWPPSQNSSPPKWFCTSKGLLGAGPSGIMAADAIITDSGAMHV 300

Query: 301  AGVPIVNPSTVVVWEVTPGPGNGFQATPKTSTSNGVPAPLSPPNWSGFAPLAAYLFSWQE 360
            AGVPIVNPSTVVVWEVTPGPGNGFQATPKT+T+NGVPAPL+PPNWSGFAPLAAYLFSWQE
Sbjct: 301  AGVPIVNPSTVVVWEVTPGPGNGFQATPKTTTNNGVPAPLNPPNWSGFAPLAAYLFSWQE 360

Query: 361  FLLSELKQGKNKT-QDVNDSIPLHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTAVAFDP 420
            FLLSELKQGK +T QDVND+IPLHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTAVAFDP
Sbjct: 361  FLLSELKQGKKQTDQDVNDTIPLHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTAVAFDP 420

Query: 421  TQGGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPVVLHQIFGSPTASFGGQA 480
            T+GGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPVVLHQIFG+PTASF GQA
Sbjct: 421  TRGGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPVVLHQIFGNPTASFSGQA 480

Query: 481  PMQTVWLSKVDMSISPTSDFKSNQSTASGPNSDLQKLSGAYVDKAKRVCFDPFDLPSDVR 540
            P QTVWLSKVD SISPTSDFKSNQS  SGPNSDL+KLSGAY+DKAK+VCFDPFDLPSDVR
Sbjct: 481  PTQTVWLSKVDTSISPTSDFKSNQSAVSGPNSDLRKLSGAYIDKAKKVCFDPFDLPSDVR 540

Query: 541  TLARIVYSAHGGEIAVAFLCGGVHIFSGPNFAPVENYQINVGPAIAAPAFSSTSCCSASV 600
            TLARIVYSAHGGEIAVAFLCGGVHIFSGPNFAPVENYQINVGPAIAAPAFSSTSCCSASV
Sbjct: 541  TLARIVYSAHGGEIAVAFLCGGVHIFSGPNFAPVENYQINVGPAIAAPAFSSTSCCSASV 600

Query: 601  WHEVNKDYTMLKIIRVLPPAAPNNQLKANSSTWERAVAERFWWSLLVGVDWWDAVACTQS 660
            WH+VNKD TML+IIRVLPPAAP+NQLKANSSTWERA+AERFWWSLLVGVDWWDAV CTQS
Sbjct: 601  WHDVNKDCTMLRIIRVLPPAAPSNQLKANSSTWERAIAERFWWSLLVGVDWWDAVGCTQS 660

Query: 661  AAEDGIVSPNSVIAVLDADFHSLPSSQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQ 720
            AAEDGIVSPNSVIAVLDADFHSLPSSQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQ
Sbjct: 661  AAEDGIVSPNSVIAVLDADFHSLPSSQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQ 720

Query: 721  ARLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMAVEPALIPSIQGCKVMQA 780
            ARLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMAVEPALIPSI      QA
Sbjct: 721  ARLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMAVEPALIPSI------QA 780

Query: 781  YVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVTSPT-QSXXXXXXXXXXX 840
            YVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRN+V SPT  S   XXXXXXXX
Sbjct: 781  YVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNIVASPTPSSASPXXXXXXXX 840

Query: 841  XXXXXXXXTQMQAWVQGAIAKISSTTDGVASSTPNPISGSSTFMPISINTGTFPGTPAVR 900
            XXXXXXXX  MQAWVQGAIAKISSTTDGV SSTPNPISGSSTFMPISINTGTFPGTPAVR
Sbjct: 841  XXXXXXXXXXMQAWVQGAIAKISSTTDGVTSSTPNPISGSSTFMPISINTGTFPGTPAVR 900

Query: 901  LIGDCHFLHRLCQLLLFCFFFRRTQLPRYISNSQKNADANIQKPQPAVPGKVEEISSNSV 960
            LIGDCHFLHRLCQLLLFCFFFRRTQL RYI  SQ+NADAN QKPQP+VPGKVEEI+SNSV
Sbjct: 901  LIGDCHFLHRLCQLLLFCFFFRRTQLSRYIGISQRNADANSQKPQPSVPGKVEEINSNSV 960

Query: 961  KPVPNIIKPEESQIARAVPLVTGAKGAEEGLAGRSRIGTGNAGQGYTSEEVKVLFLILID 1020
            KPV NIIKP+ESQI RA  LVTGAKGAEEGLAGRSRIGTGNAGQGYTSEEVKVLFLILID
Sbjct: 961  KPVQNIIKPDESQIVRASQLVTGAKGAEEGLAGRSRIGTGNAGQGYTSEEVKVLFLILID 1020

Query: 1021 LCRRTASLPHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAA 1080
            LCRRTASLPHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAA
Sbjct: 1021 LCRRTASLPHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAA 1080

Query: 1081 GLLLRELELHPPAEEWHRRNMYGGPWSDVDDLGSTDDNSKLSNSSDPLDLNSLENCNVYY 1140
            GLLLRELELHPPAEEWHRRNMYGGPWSDVDDLG  DDNSKLSNSSDPLDLNSLENCNVYY
Sbjct: 1081 GLLLRELELHPPAEEWHRRNMYGGPWSDVDDLGPNDDNSKLSNSSDPLDLNSLENCNVYY 1140

Query: 1141 GANGLWPRKRRMSERDAAFGLNTSIGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCMRCL 1200
            GANGLWPRKRRMSERDAAFGLNTSIGLGA+LGIMGSRRDVVTAVWKTGLEGVWYKCMRCL
Sbjct: 1141 GANGLWPRKRRMSERDAAFGLNTSIGLGAFLGIMGSRRDVVTAVWKTGLEGVWYKCMRCL 1200

Query: 1201 RQTSAFASPGATNDTTQNERETWWISRWAYGCPMCGGTW 1238
            RQTSAFASPGATNDTTQNERETWWISRWAYGCPMCGGTW
Sbjct: 1201 RQTSAFASPGATNDTTQNERETWWISRWAYGCPMCGGTW 1233

[Close]

BLAST of Carg21491-RA vs. TAIR10
Match: AT4G04920.1 (sensitive to freezing 6)

HSP 1 Score: 1840.1 bits (4765), Expect = 0.0e+00
Identity = 918/1213 (75.68%), Postives = 1016/1213 (83.76%), Query Frame = 0


Query: 45   MDEDLISPATVFRIKLKQPRSNLQYKMSVPELCRNFSAVAWCGKLNAIACASETCARIPS 104
            M+ D +SPATVF +KLKQP SNL +KMSVPELCRNFSAVAWCGKLNAIACASETCARIPS
Sbjct: 77   MEIDPVSPATVFCVKLKQPNSNLLHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPS 136

Query: 105  SNANPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRST 164
            S AN PFWIPIHI+IPERPTECAVFNV+ADSPRDSVQFIEWSPTSCPRALLIANFHGR T
Sbjct: 137  SKANTPFWIPIHILIPERPTECAVFNVVADSPRDSVQFIEWSPTSCPRALLIANFHGRIT 196

Query: 165  IWTQPSRGPANLVRDASCWQLEHEWRQDIAVVTKWLSGLSAYRWLSAK-SSSSNSKPNFE 224
            IWTQP++G ANLV DA+ WQ EHEWRQDIAVVTKWL+G S YRWLS+K SS +N+K  FE
Sbjct: 197  IWTQPTQGSANLVHDATSWQCEHEWRQDIAVVTKWLTGASPYRWLSSKPSSGTNAKSTFE 256

Query: 225  EKFLPQQSQTSARWPNFLCVCSVFSSGSVQLHWSQWPSSQNSSPSKWFCTSKGLLGAGPS 284
            EKFL Q S++SARWPNFLCVCSVFSSGSVQ+HWSQWPS+Q S+  KWF T KGLLGAGPS
Sbjct: 257  EKFLSQSSESSARWPNFLCVCSVFSSGSVQIHWSQWPSNQGSTAPKWFSTKKGLLGAGPS 316

Query: 285  GIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQATPKTSTSNGVPAPLSPP 344
            GIMAADAIITDSGAMHVAGVPIVNPST+VVWEVTPGPGNG QATPK ST + VP  LS  
Sbjct: 317  GIMAADAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGLQATPKISTGSRVPPSLSSS 376

Query: 345  NWSGFAPLAAYLFSWQEFLLSELKQGKNKT-QDVNDSIPLHCSPVSNFSAYVSPEAAAQS 404
            +W+GFAPLAAYLFSWQE+L+SE+KQGK  + QD +D+I L CSPVSNFSAYVSPEAAAQS
Sbjct: 377  SWTGFAPLAAYLFSWQEYLISEIKQGKKPSDQDSSDAISLSCSPVSNFSAYVSPEAAAQS 436

Query: 405  ATTTTWGSGVTAVAFDPTQGGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPV 464
            A TTTWGSGVTAVAFDPT+GGSVIA+VIVEGQYMSPYDPDEGPSI+GWRVQRWESS+QPV
Sbjct: 437  AATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPV 496

Query: 465  VLHQIFGSPTASFGGQAPMQTVWLSKVDMSISPTSDFKSNQSTASGPNSDLQKLSGAYVD 524
            VLHQIFG+PT++FGGQ P QTVW+S+VDMSI PT DFK++Q  A+GP+ D  K   +  +
Sbjct: 497  VLHQIFGNPTSNFGGQVPTQTVWVSRVDMSIPPTKDFKNHQVAAAGPSVDAPKEPDSGDE 556

Query: 525  KAKRVCFDPFDLPSDVRTLARIVYSAHGGEIAVAFLCGGVHIFSGPNFAPVENYQINVGP 584
            KA +V FDPFDLPSD+RTLARIVYSAHGGEIA+AFL GGVHIFSGP F+PVENYQINVG 
Sbjct: 557  KANKVVFDPFDLPSDIRTLARIVYSAHGGEIAIAFLRGGVHIFSGPTFSPVENYQINVGS 616

Query: 585  AIAAPAFSSTSCCSASVWHEVNKDYTMLKIIRVLPPAAPNNQLKANSSTWERAVAERFWW 644
            AIAAPAFS TSCCSASVWH+  KD  MLKIIRVLPPA P NQ K + STWERA+AERFWW
Sbjct: 617  AIAAPAFSPTSCCSASVWHDAAKDCAMLKIIRVLPPALPRNQSKVDQSTWERAIAERFWW 676

Query: 645  SLLVGVDWWDAVACTQSAAEDGIVSPNSVIAVLDADFHSLPSSQHRQQYGPSLDRIKCRL 704
            SLLVGVDWWDAV CTQSAAEDGIVS NSVIAV+DADFHSLPS+QHRQQYGP+LDRIKCRL
Sbjct: 677  SLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVMDADFHSLPSTQHRQQYGPNLDRIKCRL 736

Query: 705  LEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMA 764
            LEGTNAQEVRAMVLDMQARLLLDMLGKGIESAL+NPSAL+ EPW   GET++GI+PEAMA
Sbjct: 737  LEGTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVFEPWRVDGETITGINPEAMA 796

Query: 765  VEPALIPSIQGCKVMQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVT 824
            V+PAL+ SI      QAYVDAVLDLASHFITRLRRYASFCRTLASHA +AGTGSNRN VT
Sbjct: 797  VDPALVSSI------QAYVDAVLDLASHFITRLRRYASFCRTLASHAASAGTGSNRNNVT 856

Query: 825  SPTQSXXXXXXXXXXXXXXXXXXXTQ------------------MQAWVQGAIAKISSTT 884
            SPTQ+                    Q                  +QAW+QGAIAKISS+ 
Sbjct: 857  SPTQNASSPATPQVFPDKSLYLAVGQPXXXXXXXXXXXXXXXXHVQAWMQGAIAKISSSN 916

Query: 885  DGVASSTPNPISGSSTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQL 944
            DG ++ST +PISGS TFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCF  R ++ 
Sbjct: 917  DG-SNSTASPISGSPTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFLQRSSRF 976

Query: 945  PRYISNSQKNADANIQKPQPAVPGKVEEISSNSVKPVPNIIKPEESQIARAVPLVTGAKG 1004
            P      Q+NAD + QK Q     K+EE+  NS KP P + + E++Q  R   L TG KG
Sbjct: 977  P------QRNADVSSQKLQTGATSKLEEV--NSAKPTPALNRIEDAQGFRGAQLGTGVKG 1036

Query: 1005 AEEGLAGRSRIGTGNAGQGYTSEEVKVLFLILIDLCRRTASLPHPLPVSQVGSSNIQVRL 1064
             +E  A  +++G+GNAGQGYT EEV+VLF IL+DLC+RT+ L HPLP SQVGS NIQVRL
Sbjct: 1037 IDENSARTTKMGSGNAGQGYTYEEVRVLFHILMDLCKRTSGLAHPLPGSQVGSGNIQVRL 1096

Query: 1065 HYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMYGGPW 1124
            HYIDGNYTVLPEVVEA+LGPHMQNMPRPRGADAAGLLLRELELHPP+EEWHRRN++GGP 
Sbjct: 1097 HYIDGNYTVLPEVVEAALGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNLFGGPG 1156

Query: 1125 SDVDDLGSTDDNSKLSNSSDPLDLNSLENCNVYYGANGLWPRKRRMSERDAAFGLNTSIG 1184
            S+ +D+  TDD SKLSNS D  D N    C+ Y   + LWPRKRRMSERDAAFG NTS+G
Sbjct: 1157 SEPEDMILTDDVSKLSNSLDLPDTNFSGICDGYNRVHSLWPRKRRMSERDAAFGSNTSVG 1216

Query: 1185 LGAYLGIMGSRRDVVTAVWKTGLEGVWYKCMRCLRQTSAFASPGATNDTTQNERETWWIS 1238
            LGAYLGIMGSRRDVVTA WKTGLEGVWYKC+RCLRQTSAFASPGAT     NERETWW S
Sbjct: 1217 LGAYLGIMGSRRDVVTATWKTGLEGVWYKCIRCLRQTSAFASPGATKQPNPNERETWWTS 1274

[Close]

BLAST of Carg21491-RA vs. Swiss-Prot
Match: sp|F4JGZ1|MED16_ARATH (Mediator of RNA polymerase II transcription subunit 16 OS=Arabidopsis thaliana OX=3702 GN=MED16 PE=1 SV=1)

HSP 1 Score: 1840.1 bits (4765), Expect = 0.0e+00
Identity = 918/1213 (75.68%), Postives = 1016/1213 (83.76%), Query Frame = 0


Query: 45   MDEDLISPATVFRIKLKQPRSNLQYKMSVPELCRNFSAVAWCGKLNAIACASETCARIPS 104
            M+ D +SPATVF +KLKQP SNL +KMSVPELCRNFSAVAWCGKLNAIACASETCARIPS
Sbjct: 77   MEIDPVSPATVFCVKLKQPNSNLLHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPS 136

Query: 105  SNANPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRST 164
            S AN PFWIPIHI+IPERPTECAVFNV+ADSPRDSVQFIEWSPTSCPRALLIANFHGR T
Sbjct: 137  SKANTPFWIPIHILIPERPTECAVFNVVADSPRDSVQFIEWSPTSCPRALLIANFHGRIT 196

Query: 165  IWTQPSRGPANLVRDASCWQLEHEWRQDIAVVTKWLSGLSAYRWLSAK-SSSSNSKPNFE 224
            IWTQP++G ANLV DA+ WQ EHEWRQDIAVVTKWL+G S YRWLS+K SS +N+K  FE
Sbjct: 197  IWTQPTQGSANLVHDATSWQCEHEWRQDIAVVTKWLTGASPYRWLSSKPSSGTNAKSTFE 256

Query: 225  EKFLPQQSQTSARWPNFLCVCSVFSSGSVQLHWSQWPSSQNSSPSKWFCTSKGLLGAGPS 284
            EKFL Q S++SARWPNFLCVCSVFSSGSVQ+HWSQWPS+Q S+  KWF T KGLLGAGPS
Sbjct: 257  EKFLSQSSESSARWPNFLCVCSVFSSGSVQIHWSQWPSNQGSTAPKWFSTKKGLLGAGPS 316

Query: 285  GIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQATPKTSTSNGVPAPLSPP 344
            GIMAADAIITDSGAMHVAGVPIVNPST+VVWEVTPGPGNG QATPK ST + VP  LS  
Sbjct: 317  GIMAADAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGLQATPKISTGSRVPPSLSSS 376

Query: 345  NWSGFAPLAAYLFSWQEFLLSELKQGKNKT-QDVNDSIPLHCSPVSNFSAYVSPEAAAQS 404
            +W+GFAPLAAYLFSWQE+L+SE+KQGK  + QD +D+I L CSPVSNFSAYVSPEAAAQS
Sbjct: 377  SWTGFAPLAAYLFSWQEYLISEIKQGKKPSDQDSSDAISLSCSPVSNFSAYVSPEAAAQS 436

Query: 405  ATTTTWGSGVTAVAFDPTQGGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPV 464
            A TTTWGSGVTAVAFDPT+GGSVIA+VIVEGQYMSPYDPDEGPSI+GWRVQRWESS+QPV
Sbjct: 437  AATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPV 496

Query: 465  VLHQIFGSPTASFGGQAPMQTVWLSKVDMSISPTSDFKSNQSTASGPNSDLQKLSGAYVD 524
            VLHQIFG+PT++FGGQ P QTVW+S+VDMSI PT DFK++Q  A+GP+ D  K   +  +
Sbjct: 497  VLHQIFGNPTSNFGGQVPTQTVWVSRVDMSIPPTKDFKNHQVAAAGPSVDAPKEPDSGDE 556

Query: 525  KAKRVCFDPFDLPSDVRTLARIVYSAHGGEIAVAFLCGGVHIFSGPNFAPVENYQINVGP 584
            KA +V FDPFDLPSD+RTLARIVYSAHGGEIA+AFL GGVHIFSGP F+PVENYQINVG 
Sbjct: 557  KANKVVFDPFDLPSDIRTLARIVYSAHGGEIAIAFLRGGVHIFSGPTFSPVENYQINVGS 616

Query: 585  AIAAPAFSSTSCCSASVWHEVNKDYTMLKIIRVLPPAAPNNQLKANSSTWERAVAERFWW 644
            AIAAPAFS TSCCSASVWH+  KD  MLKIIRVLPPA P NQ K + STWERA+AERFWW
Sbjct: 617  AIAAPAFSPTSCCSASVWHDAAKDCAMLKIIRVLPPALPRNQSKVDQSTWERAIAERFWW 676

Query: 645  SLLVGVDWWDAVACTQSAAEDGIVSPNSVIAVLDADFHSLPSSQHRQQYGPSLDRIKCRL 704
            SLLVGVDWWDAV CTQSAAEDGIVS NSVIAV+DADFHSLPS+QHRQQYGP+LDRIKCRL
Sbjct: 677  SLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVMDADFHSLPSTQHRQQYGPNLDRIKCRL 736

Query: 705  LEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMA 764
            LEGTNAQEVRAMVLDMQARLLLDMLGKGIESAL+NPSAL+ EPW   GET++GI+PEAMA
Sbjct: 737  LEGTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVFEPWRVDGETITGINPEAMA 796

Query: 765  VEPALIPSIQGCKVMQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVT 824
            V+PAL+ SI      QAYVDAVLDLASHFITRLRRYASFCRTLASHA +AGTGSNRN VT
Sbjct: 797  VDPALVSSI------QAYVDAVLDLASHFITRLRRYASFCRTLASHAASAGTGSNRNNVT 856

Query: 825  SPTQSXXXXXXXXXXXXXXXXXXXTQ------------------MQAWVQGAIAKISSTT 884
            SPTQ+                    Q                  +QAW+QGAIAKISS+ 
Sbjct: 857  SPTQNASSPATPQVFPDKSLYLAVGQPXXXXXXXXXXXXXXXXHVQAWMQGAIAKISSSN 916

Query: 885  DGVASSTPNPISGSSTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQL 944
            DG ++ST +PISGS TFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCF  R ++ 
Sbjct: 917  DG-SNSTASPISGSPTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFLQRSSRF 976

Query: 945  PRYISNSQKNADANIQKPQPAVPGKVEEISSNSVKPVPNIIKPEESQIARAVPLVTGAKG 1004
            P      Q+NAD + QK Q     K+EE+  NS KP P + + E++Q  R   L TG KG
Sbjct: 977  P------QRNADVSSQKLQTGATSKLEEV--NSAKPTPALNRIEDAQGFRGAQLGTGVKG 1036

Query: 1005 AEEGLAGRSRIGTGNAGQGYTSEEVKVLFLILIDLCRRTASLPHPLPVSQVGSSNIQVRL 1064
             +E  A  +++G+GNAGQGYT EEV+VLF IL+DLC+RT+ L HPLP SQVGS NIQVRL
Sbjct: 1037 IDENSARTTKMGSGNAGQGYTYEEVRVLFHILMDLCKRTSGLAHPLPGSQVGSGNIQVRL 1096

Query: 1065 HYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMYGGPW 1124
            HYIDGNYTVLPEVVEA+LGPHMQNMPRPRGADAAGLLLRELELHPP+EEWHRRN++GGP 
Sbjct: 1097 HYIDGNYTVLPEVVEAALGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNLFGGPG 1156

Query: 1125 SDVDDLGSTDDNSKLSNSSDPLDLNSLENCNVYYGANGLWPRKRRMSERDAAFGLNTSIG 1184
            S+ +D+  TDD SKLSNS D  D N    C+ Y   + LWPRKRRMSERDAAFG NTS+G
Sbjct: 1157 SEPEDMILTDDVSKLSNSLDLPDTNFSGICDGYNRVHSLWPRKRRMSERDAAFGSNTSVG 1216

Query: 1185 LGAYLGIMGSRRDVVTAVWKTGLEGVWYKCMRCLRQTSAFASPGATNDTTQNERETWWIS 1238
            LGAYLGIMGSRRDVVTA WKTGLEGVWYKC+RCLRQTSAFASPGAT     NERETWW S
Sbjct: 1217 LGAYLGIMGSRRDVVTATWKTGLEGVWYKCIRCLRQTSAFASPGATKQPNPNERETWWTS 1274

[Close]

BLAST of Carg21491-RA vs. TrEMBL
Match: tr|A0A1S3B503|A0A1S3B503_CUCME (mediator of RNA polymerase II transcription subunit 16 OS=Cucumis melo OX=3656 GN=LOC103486239 PE=4 SV=1)

HSP 1 Score: 2337.4 bits (6056), Expect = 0.0e+00
Identity = 1170/1239 (94.43%), Postives = 1200/1239 (96.85%), Query Frame = 0


Query: 1    MSQVSNATEGEEEPLVQPLELPKGSDKTEVVAVEEEVMEKPEDPMDEDLISPATVFRIKL 60
            M+QVSNATEGEE+P VQPLELPK SDKTE +  +EEVMEKP+D MDEDL++PATVFRIKL
Sbjct: 1    MTQVSNATEGEEQPQVQPLELPKVSDKTEPLPAQEEVMEKPDDSMDEDLVTPATVFRIKL 60

Query: 61   KQPRSNLQYKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIP 120
            KQPRSNLQ+KMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIP
Sbjct: 61   KQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIP 120

Query: 121  ERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRSTIWTQPSRGPANLVRDA 180
            ERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGR+TIWTQPSRGPANLVRDA
Sbjct: 121  ERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRTTIWTQPSRGPANLVRDA 180

Query: 181  SCWQLEHEWRQDIAVVTKWLSGLSAYRWLSAKSSSSNSKPNFEEKFLPQQSQTSARWPNF 240
            SCWQLEHEWRQDIAVVTKWLSGLSAYRWLS+KS+SSNSKPNFEEKFLPQQSQTSARWPNF
Sbjct: 181  SCWQLEHEWRQDIAVVTKWLSGLSAYRWLSSKSNSSNSKPNFEEKFLPQQSQTSARWPNF 240

Query: 241  LCVCSVFSSGSVQLHWSQWPSSQNSSPSKWFCTSKGLLGAGPSGIMAADAIITDSGAMHV 300
            LCVCSVFSSGSVQLHWSQWP SQNSSP KWFCTSKGLLGAGPSGIMAADAIITDSGAMHV
Sbjct: 241  LCVCSVFSSGSVQLHWSQWPPSQNSSPPKWFCTSKGLLGAGPSGIMAADAIITDSGAMHV 300

Query: 301  AGVPIVNPSTVVVWEVTPGPGNGFQATPKTSTSNGVPAPLSPPNWSGFAPLAAYLFSWQE 360
            AGVPIVNPSTVVVWEVTPGPGNGFQATPKT+TSNGVPAPLSPPNWSGFAPLAAYLFSWQE
Sbjct: 301  AGVPIVNPSTVVVWEVTPGPGNGFQATPKTNTSNGVPAPLSPPNWSGFAPLAAYLFSWQE 360

Query: 361  FLLSELKQGKNKT-QDVNDSIPLHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTAVAFDP 420
            FLLSELKQGK +T QDVND+IPLHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTAVAFDP
Sbjct: 361  FLLSELKQGKKQTDQDVNDTIPLHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTAVAFDP 420

Query: 421  TQGGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPVVLHQIFGSPTASFGGQA 480
            T+GGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPVVLHQIFGSPTASF GQA
Sbjct: 421  TRGGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPVVLHQIFGSPTASFSGQA 480

Query: 481  PMQTVWLSKVDMSISPTSDFKSNQSTASGPNSDLQKLSGAYVDKAKRVCFDPFDLPSDVR 540
            P QTVWLSKVD SISPTSDFKSNQS  SGPNSDL+KLSGAY+DKAK+VCFDPFDLPSDVR
Sbjct: 481  PTQTVWLSKVDTSISPTSDFKSNQSAVSGPNSDLRKLSGAYIDKAKKVCFDPFDLPSDVR 540

Query: 541  TLARIVYSAHGGEIAVAFLCGGVHIFSGPNFAPVENYQINVGPAIAAPAFSSTSCCSASV 600
            TLARIVYSAHGGEIAVAFLCGGVH+FSGPNFAPVENYQINVGPAIAAPAFSSTSCCSASV
Sbjct: 541  TLARIVYSAHGGEIAVAFLCGGVHVFSGPNFAPVENYQINVGPAIAAPAFSSTSCCSASV 600

Query: 601  WHEVNKDYTMLKIIRVLPPAAPNNQLKANSSTWERAVAERFWWSLLVGVDWWDAVACTQS 660
            WH+VNKD TML+IIRVLPPAAP+NQLKANSSTWERA+AERFWWSLLVGVDWWDAV CTQS
Sbjct: 601  WHDVNKDCTMLRIIRVLPPAAPSNQLKANSSTWERAIAERFWWSLLVGVDWWDAVGCTQS 660

Query: 661  AAEDGIVSPNSVIAVLDADFHSLPSSQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQ 720
            AAEDGIVSPNSVIAVLDADFHSLPSSQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQ
Sbjct: 661  AAEDGIVSPNSVIAVLDADFHSLPSSQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQ 720

Query: 721  ARLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMAVEPALIPSIQGCKVMQA 780
            ARLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMAVEPALIPSI      QA
Sbjct: 721  ARLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMAVEPALIPSI------QA 780

Query: 781  YVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVTSPT-QSXXXXXXXXXXX 840
            YVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRN+V SPT  S   XXXXXXXX
Sbjct: 781  YVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNIVASPTPSSASPXXXXXXXX 840

Query: 841  XXXXXXXXTQMQAWVQGAIAKISSTTDGVASSTPNPISGSSTFMPISINTGTFPGTPAVR 900
            XXXXXXXX  MQAWVQGAIAKISSTTDGV SSTPNPISGSSTFMPISINTGTFPGTPAVR
Sbjct: 841  XXXXXXXXXXMQAWVQGAIAKISSTTDGVTSSTPNPISGSSTFMPISINTGTFPGTPAVR 900

Query: 901  LIGDCHFLHRLCQLLLFCFFFRRTQLPRYISNSQKNADANIQKPQPAVPGKVEEISSNSV 960
            LIGDCHFLHRLCQLLLFCFFFRRTQLPRYI NSQ+NADANIQKPQPAVPGKVEEI+SNSV
Sbjct: 901  LIGDCHFLHRLCQLLLFCFFFRRTQLPRYIGNSQRNADANIQKPQPAVPGKVEEINSNSV 960

Query: 961  KPVPNIIKPEESQIARAVPLVTGAKGAEEGLAGRSRIGTGNAGQGYTSEEVKVLFLILID 1020
            KPV NI+KP+ESQI RA  LVTGAKGAEEGLAGRSRIGTGNAGQGYTSEEVKVLFLILID
Sbjct: 961  KPVQNIVKPDESQIVRASQLVTGAKGAEEGLAGRSRIGTGNAGQGYTSEEVKVLFLILID 1020

Query: 1021 LCRRTASLPHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAA 1080
            LCRRTASLPHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAA
Sbjct: 1021 LCRRTASLPHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAA 1080

Query: 1081 GLLLRELELHPPAEEWHRRNMYGGPWSDVDDLGSTDDNSKLSNSSDPLDLNSLENCNVYY 1140
            GLLLRELELHPPAEEWHRRNMYGGPWSDVDDLG  DD+SKLSNSSDPLDLNSLENCNVYY
Sbjct: 1081 GLLLRELELHPPAEEWHRRNMYGGPWSDVDDLGPNDDSSKLSNSSDPLDLNSLENCNVYY 1140

Query: 1141 GANGLWPRKRRMSERDAAFGLNTSIGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCMRCL 1200
            GANGLWPRKRRMSERDAAFGLNTSIGLGA+LGIMGSRRDVVTAVWKTGLEGVWYKCMRCL
Sbjct: 1141 GANGLWPRKRRMSERDAAFGLNTSIGLGAFLGIMGSRRDVVTAVWKTGLEGVWYKCMRCL 1200

Query: 1201 RQTSAFASPGATNDTTQNERETWWISRWAYGCPMCGGTW 1238
            RQTSAFASPGATNDTTQNERETWWISRWAYGCPMCGGTW
Sbjct: 1201 RQTSAFASPGATNDTTQNERETWWISRWAYGCPMCGGTW 1233

[Close]

BLAST of Carg21491-RA vs. TrEMBL
Match: tr|A0A0A0LUJ6|A0A0A0LUJ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073710 PE=4 SV=1)

HSP 1 Score: 2326.6 bits (6028), Expect = 0.0e+00
Identity = 1166/1239 (94.11%), Postives = 1197/1239 (96.61%), Query Frame = 0


Query: 1    MSQVSNATEGEEEPLVQPLELPKGSDKTEVVAVEEEVMEKPEDPMDEDLISPATVFRIKL 60
            M+QVSNATEGEE+P VQPLELPK SDKTE +  +EEVMEKP+D MDEDL++PATVFRIKL
Sbjct: 1    MTQVSNATEGEEQPQVQPLELPKVSDKTEPLPAQEEVMEKPDDAMDEDLVTPATVFRIKL 60

Query: 61   KQPRSNLQYKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIP 120
            KQPRSNLQ+KMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIP
Sbjct: 61   KQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIP 120

Query: 121  ERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRSTIWTQPSRGPANLVRDA 180
            ERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGR+TIWTQPSRGPANLVRDA
Sbjct: 121  ERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRTTIWTQPSRGPANLVRDA 180

Query: 181  SCWQLEHEWRQDIAVVTKWLSGLSAYRWLSAKSSSSNSKPNFEEKFLPQQSQTSARWPNF 240
            SCWQLEHEWRQDIAVVTKWLSGLSAYRWLS+KS+SSNSKPNFEEKFLPQQSQTSARWPNF
Sbjct: 181  SCWQLEHEWRQDIAVVTKWLSGLSAYRWLSSKSNSSNSKPNFEEKFLPQQSQTSARWPNF 240

Query: 241  LCVCSVFSSGSVQLHWSQWPSSQNSSPSKWFCTSKGLLGAGPSGIMAADAIITDSGAMHV 300
            LCVCSVFSSGSVQLHWSQWP SQNSSP KWFCTSKGLLGAGPSGIMAADAIITDSGAMHV
Sbjct: 241  LCVCSVFSSGSVQLHWSQWPPSQNSSPPKWFCTSKGLLGAGPSGIMAADAIITDSGAMHV 300

Query: 301  AGVPIVNPSTVVVWEVTPGPGNGFQATPKTSTSNGVPAPLSPPNWSGFAPLAAYLFSWQE 360
            AGVPIVNPSTVVVWEVTPGPGNGFQATPKT+T+NGVPAPL+PPNWSGFAPLAAYLFSWQE
Sbjct: 301  AGVPIVNPSTVVVWEVTPGPGNGFQATPKTTTNNGVPAPLNPPNWSGFAPLAAYLFSWQE 360

Query: 361  FLLSELKQGKNKT-QDVNDSIPLHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTAVAFDP 420
            FLLSELKQGK +T QDVND+IPLHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTAVAFDP
Sbjct: 361  FLLSELKQGKKQTDQDVNDTIPLHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTAVAFDP 420

Query: 421  TQGGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPVVLHQIFGSPTASFGGQA 480
            T+GGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPVVLHQIFG+PTASF GQA
Sbjct: 421  TRGGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPVVLHQIFGNPTASFSGQA 480

Query: 481  PMQTVWLSKVDMSISPTSDFKSNQSTASGPNSDLQKLSGAYVDKAKRVCFDPFDLPSDVR 540
            P QTVWLSKVD SISPTSDFKSNQS  SGPNSDL+KLSGAY+DKAK+VCFDPFDLPSDVR
Sbjct: 481  PTQTVWLSKVDTSISPTSDFKSNQSAVSGPNSDLRKLSGAYIDKAKKVCFDPFDLPSDVR 540

Query: 541  TLARIVYSAHGGEIAVAFLCGGVHIFSGPNFAPVENYQINVGPAIAAPAFSSTSCCSASV 600
            TLARIVYSAHGGEIAVAFLCGGVHIFSGPNFAPVENYQINVGPAIAAPAFSSTSCCSASV
Sbjct: 541  TLARIVYSAHGGEIAVAFLCGGVHIFSGPNFAPVENYQINVGPAIAAPAFSSTSCCSASV 600

Query: 601  WHEVNKDYTMLKIIRVLPPAAPNNQLKANSSTWERAVAERFWWSLLVGVDWWDAVACTQS 660
            WH+VNKD TML+IIRVLPPAAP+NQLKANSSTWERA+AERFWWSLLVGVDWWDAV CTQS
Sbjct: 601  WHDVNKDCTMLRIIRVLPPAAPSNQLKANSSTWERAIAERFWWSLLVGVDWWDAVGCTQS 660

Query: 661  AAEDGIVSPNSVIAVLDADFHSLPSSQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQ 720
            AAEDGIVSPNSVIAVLDADFHSLPSSQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQ
Sbjct: 661  AAEDGIVSPNSVIAVLDADFHSLPSSQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQ 720

Query: 721  ARLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMAVEPALIPSIQGCKVMQA 780
            ARLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMAVEPALIPSI      QA
Sbjct: 721  ARLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMAVEPALIPSI------QA 780

Query: 781  YVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVTSPT-QSXXXXXXXXXXX 840
            YVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRN+V SPT  S   XXXXXXXX
Sbjct: 781  YVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNIVASPTPSSASPXXXXXXXX 840

Query: 841  XXXXXXXXTQMQAWVQGAIAKISSTTDGVASSTPNPISGSSTFMPISINTGTFPGTPAVR 900
            XXXXXXXX  MQAWVQGAIAKISSTTDGV SSTPNPISGSSTFMPISINTGTFPGTPAVR
Sbjct: 841  XXXXXXXXXXMQAWVQGAIAKISSTTDGVTSSTPNPISGSSTFMPISINTGTFPGTPAVR 900

Query: 901  LIGDCHFLHRLCQLLLFCFFFRRTQLPRYISNSQKNADANIQKPQPAVPGKVEEISSNSV 960
            LIGDCHFLHRLCQLLLFCFFFRRTQL RYI  SQ+NADAN QKPQP+VPGKVEEI+SNSV
Sbjct: 901  LIGDCHFLHRLCQLLLFCFFFRRTQLSRYIGISQRNADANSQKPQPSVPGKVEEINSNSV 960

Query: 961  KPVPNIIKPEESQIARAVPLVTGAKGAEEGLAGRSRIGTGNAGQGYTSEEVKVLFLILID 1020
            KPV NIIKP+ESQI RA  LVTGAKGAEEGLAGRSRIGTGNAGQGYTSEEVKVLFLILID
Sbjct: 961  KPVQNIIKPDESQIVRASQLVTGAKGAEEGLAGRSRIGTGNAGQGYTSEEVKVLFLILID 1020

Query: 1021 LCRRTASLPHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAA 1080
            LCRRTASLPHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAA
Sbjct: 1021 LCRRTASLPHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAA 1080

Query: 1081 GLLLRELELHPPAEEWHRRNMYGGPWSDVDDLGSTDDNSKLSNSSDPLDLNSLENCNVYY 1140
            GLLLRELELHPPAEEWHRRNMYGGPWSDVDDLG  DDNSKLSNSSDPLDLNSLENCNVYY
Sbjct: 1081 GLLLRELELHPPAEEWHRRNMYGGPWSDVDDLGPNDDNSKLSNSSDPLDLNSLENCNVYY 1140

Query: 1141 GANGLWPRKRRMSERDAAFGLNTSIGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCMRCL 1200
            GANGLWPRKRRMSERDAAFGLNTSIGLGA+LGIMGSRRDVVTAVWKTGLEGVWYKCMRCL
Sbjct: 1141 GANGLWPRKRRMSERDAAFGLNTSIGLGAFLGIMGSRRDVVTAVWKTGLEGVWYKCMRCL 1200

Query: 1201 RQTSAFASPGATNDTTQNERETWWISRWAYGCPMCGGTW 1238
            RQTSAFASPGATNDTTQNERETWWISRWAYGCPMCGGTW
Sbjct: 1201 RQTSAFASPGATNDTTQNERETWWISRWAYGCPMCGGTW 1233

[Close]

BLAST of Carg21491-RA vs. TrEMBL
Match: tr|A0A2I4EL97|A0A2I4EL97_9ROSI (mediator of RNA polymerase II transcription subunit 16 isoform X1 OS=Juglans regia OX=51240 GN=LOC108990616 PE=4 SV=1)

HSP 1 Score: 2085.1 bits (5401), Expect = 0.0e+00
Identity = 1023/1241 (82.43%), Postives = 1112/1241 (89.61%), Query Frame = 0


Query: 1    MSQVSNATEGEEEPLV-QPLELPKGSDKTEVVA-VEEEVMEKPEDPMDEDLISPATVFRI 60
            MSQ S   E E+EP   + +E+ KG++ TE  A  EE+ +EKP+DPMDED +SPATVF I
Sbjct: 1    MSQDSGPKEAEDEPAASESIEVSKGAEDTEPAASAEEDAVEKPDDPMDEDSVSPATVFCI 60

Query: 61   KLKQPRSNLQYKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIV 120
            +LKQPRSNLQ+KMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIV
Sbjct: 61   RLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIV 120

Query: 121  IPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRSTIWTQPSRGPANLVR 180
            IPERPTECAVFNV ADSPRDSVQFIEWSPTSCPRALLIANFHGR TIWTQPS+G A+LVR
Sbjct: 121  IPERPTECAVFNVTADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPSQGSASLVR 180

Query: 181  DASCWQLEHEWRQDIAVVTKWLSGLSAYRWLSAKSSSS-NSKPNFEEKFLPQQSQTSARW 240
            DASCWQ EHEWRQDIAVVTKWLSG+S YRWLS+K+ ++ NSK  FEEKFL QQSQTSARW
Sbjct: 181  DASCWQPEHEWRQDIAVVTKWLSGVSQYRWLSSKAGTAVNSKSAFEEKFLSQQSQTSARW 240

Query: 241  PNFLCVCSVFSSGSVQLHWSQWPSSQNSSPSKWFCTSKGLLGAGPSGIMAADAIITDSGA 300
            PNFLCVCSVFSSGS+QLHWSQWP SQN    KWF TSKGLLGAGPSGIMAADAIITDSGA
Sbjct: 241  PNFLCVCSVFSSGSIQLHWSQWPPSQNGVALKWFSTSKGLLGAGPSGIMAADAIITDSGA 300

Query: 301  MHVAGVPIVNPSTVVVWEVTPGPGNGFQATPKTSTSNGVPAPLSPPNWSGFAPLAAYLFS 360
            MHVAGVPIVNPSTVVVWEVTPGPGN FQATPKTS+SNGVP  L+PP+W+GFAPLAAYLFS
Sbjct: 301  MHVAGVPIVNPSTVVVWEVTPGPGNAFQATPKTSSSNGVPPSLNPPSWAGFAPLAAYLFS 360

Query: 361  WQEFLLSELKQGKNKTQDVNDSIPLHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTAVAF 420
            WQE+L+SE KQGK   QD+ND++PLHCSPVSNFSAYVSPEAAAQSA TTTWGSGVTAVAF
Sbjct: 361  WQEYLISEAKQGKRTDQDLNDTVPLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAF 420

Query: 421  DPTQGGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPVVLHQIFGSPTASFGG 480
            DPT+GGSVIA+VIVEGQYMSPYDPDEGPSI+GWRVQRWESSL+PVVLHQIFG+PT+S+GG
Sbjct: 421  DPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLKPVVLHQIFGNPTSSYGG 480

Query: 481  QAPMQTVWLSKVDMSISPTSDFKSNQSTASGPNSDLQKLSGAYVDKAKRVCFDPFDLPSD 540
            QAPMQTVW+SKVD SI PT+DFKS+++ A+GP SD++K S   VDK ++V FDPFDLPSD
Sbjct: 481  QAPMQTVWVSKVDTSIPPTNDFKSHEAAATGPTSDVRKTSDLTVDKGQKVIFDPFDLPSD 540

Query: 541  VRTLARIVYSAHGGEIAVAFLCGGVHIFSGPNFAPVENYQINVGPAIAAPAFSSTSCCSA 600
            VRTLARIVYSAHGGEIA+AFL GGVHIFSGPNFAPV+NYQINVG AIAAPAFSSTSCCSA
Sbjct: 541  VRTLARIVYSAHGGEIAIAFLRGGVHIFSGPNFAPVDNYQINVGSAIAAPAFSSTSCCSA 600

Query: 601  SVWHEVNKDYTMLKIIRVLPPAAPNNQLKANSSTWERAVAERFWWSLLVGVDWWDAVACT 660
            SVWH+ +KD TMLKIIRVLPPA P++Q KANSSTWERA+AERFWWSLLVGVDWWDAV CT
Sbjct: 601  SVWHDTSKDRTMLKIIRVLPPAVPSSQAKANSSTWERAIAERFWWSLLVGVDWWDAVGCT 660

Query: 661  QSAAEDGIVSPNSVIAVLDADFHSLPSSQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLD 720
            QSAAED IVS NSVIAVLDADFHSLPS+QHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLD
Sbjct: 661  QSAAEDSIVSLNSVIAVLDADFHSLPSTQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLD 720

Query: 721  MQARLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMAVEPALIPSIQGCKVM 780
            MQARLLLDMLGKGIESAL+NPSAL+ EPWH SGETLSGIDPEAMAVEPAL+ SI      
Sbjct: 721  MQARLLLDMLGKGIESALLNPSALVPEPWHESGETLSGIDPEAMAVEPALVLSI------ 780

Query: 781  QAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVTSPTQ-SXXXXXXXXX 840
            QAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMV SPTQ S         
Sbjct: 781  QAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSATPATSQGG 840

Query: 841  XXXXXXXXXXTQMQAWVQGAIAKISSTTDGVASSTPNPISGSSTFMPISINTGTFPGTPA 900
                      TQMQAWVQGAIAKISST DGV++STPNPISG S+FMPISINTGTFPGTPA
Sbjct: 841  QSGTASSTGSTQMQAWVQGAIAKISSTNDGVSNSTPNPISGPSSFMPISINTGTFPGTPA 900

Query: 901  VRLIGDCHFLHRLCQLLLFCFFFRRTQLPRYISNSQKNADANIQKPQPAVPGKVEEISSN 960
            VRLIGDCHFLHRLCQLLLFCFFFRRTQLPR++  +Q+NA+ N+QKPQP+ P K+EEI+S 
Sbjct: 901  VRLIGDCHFLHRLCQLLLFCFFFRRTQLPRFLLGAQRNAETNMQKPQPSAPSKLEEINSI 960

Query: 961  SVKPVPNIIKPEESQIARAVPLVTGAKGAEEGLAGRSRIGTGNAGQGYTSEEVKVLFLIL 1020
            S KP   + + E+ QI+R   L+ GAKG EEG AGRSR+G+GNAGQGYT EEV+VLFLIL
Sbjct: 961  SAKPASAVARSEDGQISRVNQLLPGAKGVEEGPAGRSRLGSGNAGQGYTFEEVRVLFLIL 1020

Query: 1021 IDLCRRTASLPHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGAD 1080
            +DLCRRT  L HPLPVSQVGS+NIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGAD
Sbjct: 1021 MDLCRRTVGLAHPLPVSQVGSNNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGAD 1080

Query: 1081 AAGLLLRELELHPPAEEWHRRNMYGGPWSDVDDLGSTDDNSKLSNSSDPLDLNSLENCNV 1140
            AAGLLLRELELHPPAEEWHRRNMYGGPWSD DD+G  DD+ KL NS DP+D NSLEN +V
Sbjct: 1081 AAGLLLRELELHPPAEEWHRRNMYGGPWSDPDDMGHVDDSPKLRNSGDPIDFNSLENSDV 1140

Query: 1141 YYGANGLWPRKRRMSERDAAFGLNTSIGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCMR 1200
            YYG + LWPRKRRMSERDAAFGLNTS+GLGAYLGIMGSRRDVVTAVWKTGLEGVWYKC+R
Sbjct: 1141 YYGPHSLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIR 1200

Query: 1201 CLRQTSAFASPGATNDTTQNERETWWISRWAYGCPMCGGTW 1238
            CLRQTSAFASPGA++   QN+RETWWISRWAYGCPMCGGTW
Sbjct: 1201 CLRQTSAFASPGASHPPNQNDRETWWISRWAYGCPMCGGTW 1235

[Close]

BLAST of Carg21491-RA vs. TrEMBL
Match: tr|A0A2P5FE95|A0A2P5FE95_9ROSA (Mediator of RNA polymerase II transcription subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_080140 PE=4 SV=1)

HSP 1 Score: 2064.7 bits (5348), Expect = 0.0e+00
Identity = 1011/1206 (83.83%), Postives = 1093/1206 (90.63%), Query Frame = 0


Query: 38   MEKPEDPMDEDLISPATVFRIKLKQPRSNLQYKMSVPELCRNFSAVAWCGKLNAIACASE 97
            +EKP DPM+ED +SPATVF I+LKQPRSNL +KMSVPELCRNFSAVAWCGKLNAIACASE
Sbjct: 48   VEKPHDPMEEDAVSPATVFCIRLKQPRSNLLHKMSVPELCRNFSAVAWCGKLNAIACASE 107

Query: 98   TCARIPSSNANPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIA 157
            TCARIPSSNANPPFWIPIHIVIPERPTECAVFNV+ADSPRDSVQFIEWSPTSCPRALLIA
Sbjct: 108  TCARIPSSNANPPFWIPIHIVIPERPTECAVFNVVADSPRDSVQFIEWSPTSCPRALLIA 167

Query: 158  NFHGRSTIWTQPSRGPANLVRDASCWQLEHEWRQDIAVVTKWLSGLSAYRWLSAKSSS-S 217
            NFHGR TIWTQPS+G AN+VRDA+CWQ EHEWRQDIAVVTKWLSG+S YRWLS+KSSS S
Sbjct: 168  NFHGRITIWTQPSQGSANVVRDATCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSSSGS 227

Query: 218  NSKPNFEEKFLPQQSQTSARWPNFLCVCSVFSSGSVQLHWSQWPSSQNSSPSKWFCTSKG 277
            NSK  FEEKFL QQSQ SARWPNFLCVCSVFSSGSVQLHWSQWP +QNS+ +KWFCTSKG
Sbjct: 228  NSKSTFEEKFLSQQSQNSARWPNFLCVCSVFSSGSVQLHWSQWPPNQNSASAKWFCTSKG 287

Query: 278  LLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQATPKTSTSNGV 337
            LLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQ TPKTSTSNGV
Sbjct: 288  LLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQTTPKTSTSNGV 347

Query: 338  PAPLSPPNWSGFAPLAAYLFSWQEFLLSELKQGKNKTQ-DVNDSIPLHCSPVSNFSAYVS 397
            P  ++PP+W+GF+PLAAYLFSWQE+L+SE K GK +T  +  D++ LHCSPVSNFSAYVS
Sbjct: 348  PPSINPPSWAGFSPLAAYLFSWQEYLISEAKSGKKQTDLEFGDTVQLHCSPVSNFSAYVS 407

Query: 398  PEAAAQSATTTTWGSGVTAVAFDPTQGGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRW 457
            PEAAAQSATTTTWGSGVTAVAFDPT+GGSVIA+VIVEGQYMSPYDPDEGPSI+GWRVQRW
Sbjct: 408  PEAAAQSATTTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRW 467

Query: 458  ESSLQPVVLHQIFGSPTASFGGQAPMQTVWLSKVDMSISPTSDFKSNQSTA---SGPNSD 517
            ESS+QPVVLHQIFG+PT+SFGGQAPMQTVW+SKVD SI PT+DFKS+Q+TA   +GP SD
Sbjct: 468  ESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIQPTNDFKSHQTTATGVTGPTSD 527

Query: 518  LQKLSGAYVDKAKRVCFDPFDLPSDVRTLARIVYSAHGGEIAVAFLCGGVHIFSGPNFAP 577
            ++K S + V+KAKRV FDPFDLPSDVRTLARIVYSAHGGEIAVAFL GGVHIFSGPNFAP
Sbjct: 528  VRKASDSIVEKAKRVNFDPFDLPSDVRTLARIVYSAHGGEIAVAFLRGGVHIFSGPNFAP 587

Query: 578  VENYQINVGPAIAAPAFSSTSCCSASVWHEVNKDYTMLKIIRVLPPAAPNNQLKANSSTW 637
            V+NYQINVG AIAAPAFSSTSCCSASVWH+ +KD T+LKIIRVLPPA P +Q KANSS W
Sbjct: 588  VDNYQINVGSAIAAPAFSSTSCCSASVWHDTSKDRTILKIIRVLPPAVPGSQDKANSSAW 647

Query: 638  ERAVAERFWWSLLVGVDWWDAVACTQSAAEDGIVSPNSVIAVLDADFHSLPSSQHRQQYG 697
            ERA+AERFWWSL+VGVDWWDAV CTQSAAEDGIVS NSVIAVLDADFHSLPS+QHRQQYG
Sbjct: 648  ERAIAERFWWSLMVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSTQHRQQYG 707

Query: 698  PSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALLSEPWHASGET 757
            PSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSAL+ EPW ASGET
Sbjct: 708  PSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPEPWQASGET 767

Query: 758  LSGIDPEAMAVEPALIPSIQGCKVMQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTA 817
            LSGIDPEAMAVEP+L+PSI      QAYVDAVLDLASHFITRLRRYASFCRTLASHAVTA
Sbjct: 768  LSGIDPEAMAVEPSLVPSI------QAYVDAVLDLASHFITRLRRYASFCRTLASHAVTA 827

Query: 818  GTGSNRNMVTSPTQ-SXXXXXXXXXXXXXXXXXXXTQMQAWVQGAIAKISSTTDGVASST 877
            GTGSNRNMV SPTQ S                   TQMQAWVQGAIAKISSTTDGV+SS 
Sbjct: 828  GTGSNRNMVASPTQSSASPATNQGGQSGTTNSTGSTQMQAWVQGAIAKISSTTDGVSSSA 887

Query: 878  PNPISGSSTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLPRYISNS 937
            PNPISG S+FMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLPR+   S
Sbjct: 888  PNPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLPRFTGAS 947

Query: 938  QKNADANIQKPQPAVPGKVEEISSNSVKPVPNIIKPEESQIARAVPLVTGAKGAEEGLAG 997
            Q+N D ++QKPQ   PGKVEE+ S   KP+ ++++ +E+Q+ARA  ++ GAK  EEG +G
Sbjct: 948  QRNTDTSVQKPQSGPPGKVEEMGSAPTKPL-SVVRTDENQVARAGQVMPGAKAVEEGSSG 1007

Query: 998  RSRIGTGNAGQGYTSEEVKVLFLILIDLCRRTASLPHPLPVSQVGSSNIQVRLHYIDGNY 1057
            RSR+G+GNAGQGYT EEV+VLFLIL+DLCRRT+ L HPLPVSQVGSSNIQVRLHYIDGNY
Sbjct: 1008 RSRLGSGNAGQGYTFEEVRVLFLILMDLCRRTSGLAHPLPVSQVGSSNIQVRLHYIDGNY 1067

Query: 1058 TVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMYGGPWSDVDDLG 1117
            TVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMYGGPWSD DD+G
Sbjct: 1068 TVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMYGGPWSDPDDMG 1127

Query: 1118 STDDNSKLSNSSDPLDLNSLENCNVYYGANGLWPRKRRMSERDAAFGLNTSIGLGAYLGI 1177
            S DD  KLSNS+DPLD +SLE+C+VYYG  GLWPRKRRMSERDAAFGLNTS+GLGAYLGI
Sbjct: 1128 SLDDTPKLSNSADPLDFSSLESCDVYYGTQGLWPRKRRMSERDAAFGLNTSVGLGAYLGI 1187

Query: 1178 MGSRRDVVTAVWKTGLEGVWYKCMRCLRQTSAFASPGATNDTTQNERETWWISRWAYGCP 1237
            MGSRRDVVTAVWKTGLEGVWYKC+RCLRQTSA ASP ATN   QN+RE WWISRWAYGCP
Sbjct: 1188 MGSRRDVVTAVWKTGLEGVWYKCIRCLRQTSALASPSATNPPNQNDREVWWISRWAYGCP 1246

[Close]

BLAST of Carg21491-RA vs. TrEMBL
Match: tr|B9RZ66|B9RZ66_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0935900 PE=4 SV=1)

HSP 1 Score: 2057.0 bits (5328), Expect = 0.0e+00
Identity = 1035/1237 (83.67%), Postives = 1126/1237 (91.03%), Query Frame = 0


Query: 9    EGEEEPLVQPLEL---PKGSDKT--EVVAVEEEVMEKPEDPMDEDLISPATVFRIKLKQP 68
            E EEE + Q LE+     GSDK   E V+ EE+ +EKP+DPM+ED +SPATVF I+LKQP
Sbjct: 21   EPEEESVGQSLEIVAKGAGSDKPAGEPVSSEEDSVEKPDDPMEEDSVSPATVFCIRLKQP 80

Query: 69   RSNLQYKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIPERP 128
            RSNLQ+KMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIPERP
Sbjct: 81   RSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIPERP 140

Query: 129  TECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRSTIWTQPSRGPANLVRDASCW 188
            TECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGR TIWTQPS+GP N+VRDASCW
Sbjct: 141  TECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPSQGPVNMVRDASCW 200

Query: 189  QLEHEWRQDIAVVTKWLSGLSAYRWLSAKSSSS-NSKPNFEEKFLPQQSQTSARWPNFLC 248
            Q EHEWRQDIAVVTKWLSG+S YRWLS+KSSSS NSK  FEEKFL QQSQTSARWPNFLC
Sbjct: 201  QREHEWRQDIAVVTKWLSGVSPYRWLSSKSSSSTNSKSTFEEKFLSQQSQTSARWPNFLC 260

Query: 249  VCSVFSSGSVQLHWSQWPSSQNSSPSKWFCTSKGLLGAGPSGIMAADAIITDSGAMHVAG 308
            VCSVFSSGSVQLHWSQWP S+ ++  +WFCTSKGLLGAGPSGIMAADAI+TDSGAMHVAG
Sbjct: 261  VCSVFSSGSVQLHWSQWPPSRTNATPEWFCTSKGLLGAGPSGIMAADAIVTDSGAMHVAG 320

Query: 309  VPIVNPSTVVVWEVTPGPGNGFQATPKTSTSNGVPAPLSPPNWSGFAPLAAYLFSWQEFL 368
            VPIVNPSTVVVWEVTPG G+GFQATPKTS SNGVP  L+PPNWSGFAPLAAYLFSWQE+L
Sbjct: 321  VPIVNPSTVVVWEVTPGLGHGFQATPKTSISNGVPPSLNPPNWSGFAPLAAYLFSWQEYL 380

Query: 369  LSELKQGKNKT-QDVNDSIPLHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTAVAFDPTQ 428
            +SE KQG+  T QD ++++ LHCSPVSNFSAYVSPEAAAQSA TTTWGSGVTAVAFDPT+
Sbjct: 381  ISEAKQGRKHTDQDFSNTVSLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTR 440

Query: 429  GGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPVVLHQIFGSPTASFGGQAPM 488
            GGSVIA+VIVEGQYMSPYDPDEGPSI+GWRVQRWESSLQPVVLHQIFG+PT+SFGGQAPM
Sbjct: 441  GGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQPVVLHQIFGNPTSSFGGQAPM 500

Query: 489  QTVWLSKVDMSISPTSDFKSNQSTASGPNSDLQKLSGAYVDKAKRVCFDPFDLPSDVRTL 548
            QTVW+SKVD SI PT+DFK++Q+ ++GP  D +K S + V+KAK + FDPFDLPSDVR+L
Sbjct: 501  QTVWVSKVDTSIPPTNDFKNHQTVSAGPAPDARKASDSGVEKAKSLTFDPFDLPSDVRSL 560

Query: 549  ARIVYSAHGGEIAVAFLCGGVHIFSGPNFAPVENYQINVGPAIAAPAFSSTSCCSASVWH 608
            ARIVYSAHGGEIA+AFL GGVHIFSGPNF PV++YQINVG AIAAPAFSSTSCCSASVWH
Sbjct: 561  ARIVYSAHGGEIAIAFLRGGVHIFSGPNFTPVDSYQINVGSAIAAPAFSSTSCCSASVWH 620

Query: 609  EVNKDYTMLKIIRVLPPAAPNNQLKANSSTWERAVAERFWWSLLVGVDWWDAVACTQSAA 668
            + +KD T+LKIIRVLPPA P++Q+KANSSTWERA+AERFWWSLLVGVDWWDAV CTQSAA
Sbjct: 621  DTSKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVGVDWWDAVGCTQSAA 680

Query: 669  EDGIVSPNSVIAVLDADFHSLPSSQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQAR 728
            ED IVS NSVIAVLDADFHSLPS+QHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQAR
Sbjct: 681  EDNIVSLNSVIAVLDADFHSLPSTQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQAR 740

Query: 729  LLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMAVEPALIPSIQGCKVMQAYV 788
            LLLDMLGKGIESALINPSAL+ EPW ASGETLSGIDPEAMAVEP+L+PSI      QAYV
Sbjct: 741  LLLDMLGKGIESALINPSALVPEPWQASGETLSGIDPEAMAVEPSLVPSI------QAYV 800

Query: 789  DAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVTSPTQS-XXXXXXXXXXXXX 848
            DAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNR+MVTSPTQS XXXXXXXXXXXXX
Sbjct: 801  DAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRSMVTSPTQSAXXXXXXXXXXXXX 860

Query: 849  XXXXXXTQMQAWVQGAIAKISSTTDGVASSTPNPISGSSTFMPISINTGTFPGTPAVRLI 908
            XXXXXX QMQAWVQGAIAKISST DGV+++TPNPISG S+FMPISINTGTFPGTPAVRLI
Sbjct: 861  XXXXXXXQMQAWVQGAIAKISSTNDGVSNATPNPISGPSSFMPISINTGTFPGTPAVRLI 920

Query: 909  GDCHFLHRLCQLLLFCFFFRRTQLPRYISNSQKNADANIQKPQPAVPGKVEEISSNSVKP 968
            GDCHFLHRLCQLLLFCFFFRRTQLPR+I  +Q++ D N+QKPQ   PGKVEE +S S KP
Sbjct: 921  GDCHFLHRLCQLLLFCFFFRRTQLPRFIGVAQRSTDTNMQKPQSGAPGKVEEANSVSSKP 980

Query: 969  VPNIIKPEESQIARAVPLVTGAKGAEEGLAGRSRIGTGNAGQGYTSEEVKVLFLILIDLC 1028
               +++ +E Q AR   LV G KG EEG AGRSR+G GNAGQGYT EEVKVLFLIL+DLC
Sbjct: 981  AQAMVRSDEVQTARGGQLVPGGKGVEEGPAGRSRLGYGNAGQGYTFEEVKVLFLILMDLC 1040

Query: 1029 RRTASLPHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGL 1088
            RRTA+L HPLPVSQVGSSNIQVRLHYI+GNYTVLPEVVEASLGPHMQNMPRPRGADAAGL
Sbjct: 1041 RRTAALAHPLPVSQVGSSNIQVRLHYINGNYTVLPEVVEASLGPHMQNMPRPRGADAAGL 1100

Query: 1089 LLRELELHPPAEEWHRRNMYGGPWSDVDDLGSTDDNSKLSNSSDPLDLNSLENCNVYYGA 1148
            LLRELELHPP+EEWHRRNM+GGPWSD +D+ S DD  ++S+ +D LD +SLENC+VYYG 
Sbjct: 1101 LLRELELHPPSEEWHRRNMFGGPWSDPEDITSADDTPRMSSYTDSLDFSSLENCDVYYGV 1160

Query: 1149 NGLWPRKRRMSERDAAFGLNTSIGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCMRCLRQ 1208
            NGLWPRKRRMSERDAAFGLNTS+GLGAYLGIMGSRRDVVTAVWKTGLEGVWYKC+RCLRQ
Sbjct: 1161 NGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQ 1220

Query: 1209 TSAFASPGATNDTTQNERETWWISRWAYGCPMCGGTW 1238
            TSAFASPGATN   QN+RE WWISRWAYGCPMCGGTW
Sbjct: 1221 TSAFASPGATNPPNQNDREAWWISRWAYGCPMCGGTW 1251

The following BLAST results are available for this feature:

BLAST of Carg21491-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023519315.1	0.0e+00	99.19	mediator of RNA polymerase II transcription subunit 16 [Cucurbita pepo subsp. pe...	[more]
XP_022927009.1	0.0e+00	99.03	mediator of RNA polymerase II transcription subunit 16 [Cucurbita moschata]	[more]
XP_023001689.1	0.0e+00	98.71	mediator of RNA polymerase II transcription subunit 16 [Cucurbita maxima]	[more]
XP_008442342.1	0.0e+00	94.43	PREDICTED: mediator of RNA polymerase II transcription subunit 16 [Cucumis melo]	[more]
XP_011653115.1	0.0e+00	94.11	PREDICTED: mediator of RNA polymerase II transcription subunit 16 [Cucumis sativ...	[more]

BLAST of Carg21491-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G04920.1	0.0e+00	75.68	sensitive to freezing 6	[more]

BLAST of Carg21491-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4JGZ1\|MED16_ARATH	0.0e+00	75.68	Mediator of RNA polymerase II transcription subunit 16 OS=Arabidopsis thaliana O...	[more]

BLAST of Carg21491-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B503\|A0A1S3B503_CUCME	0.0e+00	94.43	mediator of RNA polymerase II transcription subunit 16 OS=Cucumis melo OX=3656 G...	[more]
tr\|A0A0A0LUJ6\|A0A0A0LUJ6_CUCSA	0.0e+00	94.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073710 PE=4 SV=1	[more]
tr\|A0A2I4EL97\|A0A2I4EL97_9ROSI	0.0e+00	82.43	mediator of RNA polymerase II transcription subunit 16 isoform X1 OS=Juglans reg...	[more]
tr\|A0A2P5FE95\|A0A2P5FE95_9ROSA	0.0e+00	83.83	Mediator of RNA polymerase II transcription subunit OS=Trema orientalis OX=63057...	[more]
tr\|B9RZ66\|B9RZ66_RICCO	0.0e+00	83.67	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0935900 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0016592	mediator complex

Vocabulary: **INTERPRO**
Term	Definition
IPR038836	MED16

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg21491	Carg21491	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg21491-RA.exon.1	Carg21491-RA.exon.1	exon
Carg21491-RA.exon.2	Carg21491-RA.exon.2	exon
Carg21491-RA.exon.3	Carg21491-RA.exon.3	exon
Carg21491-RA.exon.4	Carg21491-RA.exon.4	exon
Carg21491-RA.exon.5	Carg21491-RA.exon.5	exon
Carg21491-RA.exon.6	Carg21491-RA.exon.6	exon
Carg21491-RA.exon.7	Carg21491-RA.exon.7	exon
Carg21491-RA.exon.8	Carg21491-RA.exon.8	exon
Carg21491-RA.exon.9	Carg21491-RA.exon.9	exon
Carg21491-RA.exon.10	Carg21491-RA.exon.10	exon
Carg21491-RA.exon.11	Carg21491-RA.exon.11	exon
Carg21491-RA.exon.12	Carg21491-RA.exon.12	exon
Carg21491-RA.exon.13	Carg21491-RA.exon.13	exon
Carg21491-RA.exon.14	Carg21491-RA.exon.14	exon
Carg21491-RA.exon.15	Carg21491-RA.exon.15	exon
Carg21491-RA.exon.16	Carg21491-RA.exon.16	exon
Carg21491-RA.exon.17	Carg21491-RA.exon.17	exon
Carg21491-RA.exon.18	Carg21491-RA.exon.18	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg21491-RA.five_prime_UTR.1	Carg21491-RA.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg21491-RA.CDS.1	Carg21491-RA.CDS.1	CDS
Carg21491-RA.CDS.2	Carg21491-RA.CDS.2	CDS
Carg21491-RA.CDS.3	Carg21491-RA.CDS.3	CDS
Carg21491-RA.CDS.4	Carg21491-RA.CDS.4	CDS
Carg21491-RA.CDS.5	Carg21491-RA.CDS.5	CDS
Carg21491-RA.CDS.6	Carg21491-RA.CDS.6	CDS
Carg21491-RA.CDS.7	Carg21491-RA.CDS.7	CDS
Carg21491-RA.CDS.8	Carg21491-RA.CDS.8	CDS
Carg21491-RA.CDS.9	Carg21491-RA.CDS.9	CDS
Carg21491-RA.CDS.10	Carg21491-RA.CDS.10	CDS
Carg21491-RA.CDS.11	Carg21491-RA.CDS.11	CDS
Carg21491-RA.CDS.12	Carg21491-RA.CDS.12	CDS
Carg21491-RA.CDS.13	Carg21491-RA.CDS.13	CDS
Carg21491-RA.CDS.14	Carg21491-RA.CDS.14	CDS
Carg21491-RA.CDS.15	Carg21491-RA.CDS.15	CDS
Carg21491-RA.CDS.16	Carg21491-RA.CDS.16	CDS
Carg21491-RA.CDS.17	Carg21491-RA.CDS.17	CDS
Carg21491-RA.CDS.18	Carg21491-RA.CDS.18	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg21491-RA.three_prime_UTR.1	Carg21491-RA.three_prime_UTR.1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg21491-RA	Carg21491-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 814..845
IPR038836	Mediator of RNA polymerase II transcription subunit 16	PANTHER	PTHR35130	FAMILY NOT NAMED	coord: 34..1237