Carg21445-RA (mRNA) Silver-seed gourd

Overview
NameCarg21445-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionfe(2+) transport protein 1
LocationCucurbita_argyrosperma_scaffold_103 : 393852 .. 394772 (-)
Sequence length408
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCCTCCACTTCACTTCTCAAGCTCATCTCAATCTTCCTCTTTCTCATCTCTTTTCTCACAACCCAAGTTGTTTCACAATCTAATCAATGTGAAACAACAACAAATTCTTGCACCAATAAAGACAAAGCAACACGTCTTAAAATCATTGCCATTTTCTCGATCCTCATTGCGAGCGTCATCGGCGTTTGCTCTCCGCTCTTCTCTCAATCCATCCCGATGTTGCACCCTGATAGAAACACGTTCATCATCCTTAAAGCCTTTGCATCTGGCATCATTCTCGCCACCGGTTTCATGCATGTTTTGCCTGATTCTTTCGATATGCTTTGGTCTAATTGTCTCCAGGAAAACCCGTGGCATAAGTTTCCCTTTTCGGGTTTTCTTGCCATGATGTCTGCCATTTTCACTCTCATGGTCGATTCCGTGGCTACTAGTTTGTATACTAAGAAACATACCGAAGTTATGCCTGAGAGTCGAGAAGATGGTCATCATGAGTTGCCTGTAGTCAGCGGTGGCCATTTTCATGGCCACCATCATAGAGACATCAAAGAACTCAATGTTGGTTCTCAACTACTACGTTATCGAGTTATTGCCATGGTGAGCATTTTCATTCCCTTTTTCGTGTATATATCGTTGACCAAAAGCTTCGTTTACAATATCGTGTTTGGAAATTGTTAGGTTTTGGAATTGGGAATTGTTGTCCATTCCGTTGTGATAGGACTTTCACTTGGAGCAACAAATGATACTTGCACAATCAAAGGCCTAGTGGCTGCTCTTTGTTTCCATCAAATGTTTGAAGGGATGGGTCTTGGAGGCTGTATTCTTCAGGTAATTAATATTACTAACTTCGAAGTAGCTCCTATGGTCAATCTAATCCGTACGATCAAGAACAATTATTGGTCATATATCATTTCATAA

mRNA sequence

ATGGCATCCTCCACTTCACTTCTCAAGCTCATCTCAATCTTCCTCTTTCTCATCTCTTTTCTCACAACCCAAGTTGTTTCACAATCTAATCAATGTGAAACAACAACAAATTCTTGCACCAATAAAGACAAAGCAACACTCAGCGGTGGCCATTTTCATGGCCACCATCATAGAGACATCAAAGAACTCAATGTTGGTTCTCAACTACTACGTTATCGAGTTATTGCCATGGTTTTGGAATTGGGAATTGTTGTCCATTCCGTTGTGATAGGACTTTCACTTGGAGCAACAAATGATACTTGCACAATCAAAGGCCTAGTAATTAATATTACTAACTTCGAAGTAGCTCCTATGGTCAATCTAATCCGTACGATCAAGAACAATTATTGGTCATATATCATTTCATAA

Coding sequence (CDS)

ATGGCATCCTCCACTTCACTTCTCAAGCTCATCTCAATCTTCCTCTTTCTCATCTCTTTTCTCACAACCCAAGTTGTTTCACAATCTAATCAATGTGAAACAACAACAAATTCTTGCACCAATAAAGACAAAGCAACACTCAGCGGTGGCCATTTTCATGGCCACCATCATAGAGACATCAAAGAACTCAATGTTGGTTCTCAACTACTACGTTATCGAGTTATTGCCATGGTTTTGGAATTGGGAATTGTTGTCCATTCCGTTGTGATAGGACTTTCACTTGGAGCAACAAATGATACTTGCACAATCAAAGGCCTAGTAATTAATATTACTAACTTCGAAGTAGCTCCTATGGTCAATCTAATCCGTACGATCAAGAACAATTATTGGTCATATATCATTTCATAA

Protein sequence

MASSTSLLKLISIFLFLISFLTTQVVSQSNQCETTTNSCTNKDKATLSGGHFHGHHHRDIKELNVGSQLLRYRVIAMVLELGIVVHSVVIGLSLGATNDTCTIKGLVINITNFEVAPMVNLIRTIKNNYWSYIIS
Homology
[Close]
BLAST of Carg21445-RA vs. NCBI nr
Match: XP_022927534.1 (probable zinc transporter 10 [Cucurbita moschata])

HSP 1 Score: 147.9 bits (372), Expect = 2.5e-32
Identity = 106/230 (46.09%), Postives = 107/230 (46.52%), Query Frame = 0 

Query: 1   MASSTSLLKLISIFLFLISFLTTQVVSQSNQCETTTNSCTNKDKAT-------------- 60
           MASSTSLLKLISIFLFLISFLTTQVVSQSNQCETTTNSCTNKDKAT              
Sbjct: 1   MASSTSLLKLISIFLFLISFLTTQVVSQSNQCETTTNSCTNKDKATRLKIIAIFSILIAS 60

Query: 61  ------------------------------------------------------------ 108
                                                                       
Sbjct: 61  VIGVCSPLFSQSIPMLHPDRNTFIILKAFASGIILATGFMHVLPDSFDMLWSNCLQENPW 120

[Close]
BLAST of Carg21445-RA vs. NCBI nr
Match: XP_023520364.1 (fe(2+) transport protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 145.2 bits (365), Expect = 1.6e-31
Identity = 105/230 (45.65%), Postives = 106/230 (46.09%), Query Frame = 0 

Query: 1   MASSTSLLKLISIFLFLISFLTTQVVSQSNQCETTTNSCTNKDKAT-------------- 60
           MASSTSLLKLISIFLFLISFLTTQVVSQSNQCETTTNSCTNKDKAT              
Sbjct: 1   MASSTSLLKLISIFLFLISFLTTQVVSQSNQCETTTNSCTNKDKATRLKIIAIFSILIAS 60

Query: 61  ------------------------------------------------------------ 108
                                                                       
Sbjct: 61  VIGVCSPLFSQSIPMLHPDRNTFIILKAFASGIILATGFMHVLPDSFDMLWSNCLKENPW 120

[Close]
BLAST of Carg21445-RA vs. NCBI nr
Match: XP_023001679.1 (probable zinc transporter 10 [Cucurbita maxima])

HSP 1 Score: 144.4 bits (363), Expect = 2.7e-31
Identity = 104/230 (45.22%), Postives = 106/230 (46.09%), Query Frame = 0 

Query: 1   MASSTSLLKLISIFLFLISFLTTQVVSQSNQCETTTNSCTNKDKAT-------------- 60
           MASSTSLLKLI IFLFLISFLTTQVVSQ+NQCETTTNSCTNKDKAT              
Sbjct: 1   MASSTSLLKLILIFLFLISFLTTQVVSQTNQCETTTNSCTNKDKATRLKIIAIFSILIAS 60

Query: 61  ------------------------------------------------------------ 108
                                                                       
Sbjct: 61  VIGVCSPLFSQSIPMLHPDRNTFIILKAFASGIILATGFMHVLPDSFDMLWSNCLKENPW 120

[Close]
BLAST of Carg21445-RA vs. NCBI nr
Match: XP_022142414.1 (fe(2+) transport protein 1-like [Momordica charantia])

HSP 1 Score: 109.8 bits (273), Expect = 7.5e-21
Identity = 84/230 (36.52%), Postives = 90/230 (39.13%), Query Frame = 0 

Query: 3   SSTSLLKLISIFLFLISFLTTQVVSQSNQCETTTNSCTNKDK------------------ 62
           +S S LKLISI  FL+ F TTQ VSQS++C TT N CTNKDK                  
Sbjct: 2   ASISFLKLISILFFLVCFFTTQAVSQSDECVTTANECTNKDKALRLKIIAIFSILVASVI 61

Query: 63  ------------------------------------------------------------ 108
                                                                       
Sbjct: 62  GVGSPLVTRSIPXLHPDRNLFIILKSFAAGIILATGFMHVLPDSFDMLWSSCLKENPWHK 121

[Close]
BLAST of Carg21445-RA vs. NCBI nr
Match: XP_008459065.1 (PREDICTED: fe(2+) transport protein 1 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 9.8e-21
Identity = 83/227 (36.56%), Postives = 90/227 (39.65%), Query Frame = 0 

Query: 6   SLLKLISIFLFLISFLTTQVVSQSNQCETTTNSCTNKDKA-------------------- 65
           S  KLISIFLFL+ FL+ Q VSQS++CETT NSCTNK KA                    
Sbjct: 3   SFTKLISIFLFLLCFLSIQAVSQSDECETTVNSCTNKGKALRLKIIAIFSILIASVIGVG 62

Query: 66  ------------------------------------------------------------ 108
                                                                       
Sbjct: 63  SPLVTRSIPMLHPDRNMFVILKAFAAGIILATGFMHVLPDSFDMLWSNCLKENPWHKFPF 122

[Close]
BLAST of Carg21445-RA vs. TAIR10
Match: AT4G19680.2 (iron regulated transporter 2)

HSP 1 Score: 78.6 bits (192), Expect = 3.3e-15
Identity = 42/68 (61.76%), Postives = 51/68 (75.00%), Query Frame = 0 

Query: 41  NKDKATLSGGHFHGHHHRDIKELNVGSQLLRYRVIAMVLELGIVVHSVVIGLSLGATNDT 100
           +++KA    GH H H H  +       QLLRY+VIAMVLE+GI+ HSVVIGLSLGATND+
Sbjct: 163 DQEKAIHMVGHNHSHGHGVVLATKDDGQLLRYQVIAMVLEVGILFHSVVIGLSLGATNDS 222

Query: 101 CTIKGLVI 109
           CTIKGL+I
Sbjct: 223 CTIKGLII 230

[Close]
BLAST of Carg21445-RA vs. TAIR10
Match: AT4G19690.2 (iron-regulated transporter 1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-13
Identity = 37/41 (90.24%), Postives = 41/41 (100.00%), Query Frame = 0 

Query: 67  SQLLRYRVIAMVLELGIVVHSVVIGLSLGATNDTCTIKGLV 108
           +QLLRYRVIAMVLELGI+VHSVVIGLSLGAT+DTCTIKGL+
Sbjct: 186 AQLLRYRVIAMVLELGIIVHSVVIGLSLGATSDTCTIKGLI 226

[Close]
BLAST of Carg21445-RA vs. TAIR10
Match: AT1G31260.1 (zinc transporter 10 precursor)

HSP 1 Score: 65.1 bits (157), Expect = 3.8e-11
Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = 0 

Query: 12  SIFLFLISFLTTQVVSQSNQCETTTNSCTNKDKATLSGGHF------------HGHHHRD 71
           ++F  ++  +TT V ++S + +   +   + +      GH             H  H  +
Sbjct: 137 AVFTLMVDSITTSVFTKSGRKDLRAD-VASVETPDQEIGHVQVHGXXXXXXXPHNLHGEN 196

Query: 72  IKELNVGSQLLRYRVIAMVLELGIVVHSVVIGLSLGATNDTCTIKGLV 108
            KEL    QLLRYR++A+VLELGIVV S+VIGLS+G TN+TCTIKGLV
Sbjct: 197 DKELGSYLQLLRYRILAIVLELGIVVQSIVIGLSVGDTNNTCTIKGLV 243

[Close]
BLAST of Carg21445-RA vs. TAIR10
Match: AT2G04032.1 (zinc transporter 7 precursor)

HSP 1 Score: 55.1 bits (131), Expect = 4.0e-08
Identity = 26/41 (63.41%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 67  SQLLRYRVIAMVLELGIVVHSVVIGLSLGATNDTCTIKGLV 108
           S+LLR +VIA +LELGIVVHSVVIGL++GA+++ CT++ L+
Sbjct: 204 SELLRNKVIAQILELGIVVHSVVIGLAMGASDNKCTVQSLI 244

[Close]
BLAST of Carg21445-RA vs. TAIR10
Match: AT2G32270.1 (zinc transporter 3 precursor)

HSP 1 Score: 48.5 bits (114), Expect = 3.7e-06
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 0 

Query: 68  QLLRYRVIAMVLELGIVVHSVVIGLSLGATNDTCTIKGLVI 109
           Q+LR RVIA VLELGI+VHSVVIG+SLGA+      K L I
Sbjct: 179 QILRTRVIAQVLELGIIVHSVVIGISLGASQSPDAAKALFI 219

[Close]
BLAST of Carg21445-RA vs. Swiss-Prot
Match: sp|O81850|IRT2_ARATH (Fe(2+) transport protein 2 OS=Arabidopsis thaliana OX=3702 GN=IRT2 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.0e-14
Identity = 42/68 (61.76%), Postives = 51/68 (75.00%), Query Frame = 0 

Query: 41  NKDKATLSGGHFHGHHHRDIKELNVGSQLLRYRVIAMVLELGIVVHSVVIGLSLGATNDT 100
           +++KA    GH H H H  +       QLLRY+VIAMVLE+GI+ HSVVIGLSLGATND+
Sbjct: 163 DQEKAIHMVGHNHSHGHGVVLATKDDGQLLRYQVIAMVLEVGILFHSVVIGLSLGATNDS 222

Query: 101 CTIKGLVI 109
           CTIKGL+I
Sbjct: 223 CTIKGLII 230

[Close]
BLAST of Carg21445-RA vs. Swiss-Prot
Match: sp|Q38856|IRT1_ARATH (Fe(2+) transport protein 1 OS=Arabidopsis thaliana OX=3702 GN=IRT1 PE=1 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 1.9e-12
Identity = 37/41 (90.24%), Postives = 41/41 (100.00%), Query Frame = 0 

Query: 67  SQLLRYRVIAMVLELGIVVHSVVIGLSLGATNDTCTIKGLV 108
           +QLLRYRVIAMVLELGI+VHSVVIGLSLGAT+DTCTIKGL+
Sbjct: 186 AQLLRYRVIAMVLELGIIVHSVVIGLSLGATSDTCTIKGLI 226

[Close]
BLAST of Carg21445-RA vs. Swiss-Prot
Match: sp|Q8S3W4|ZIP8_ARATH (Probable zinc transporter 8 OS=Arabidopsis thaliana OX=3702 GN=ZIP8 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.3e-12
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0 

Query: 68  QLLRYRVIAMVLELGIVVHSVVIGLSLGATNDTCTIKGLV 108
           QLLRYRVIA VLELGI+VHSVVIGLSLGATNDTCTIKGL+
Sbjct: 187 QLLRYRVIATVLELGIIVHSVVIGLSLGATNDTCTIKGLI 226

[Close]
BLAST of Carg21445-RA vs. Swiss-Prot
Match: sp|Q8W245|ZIP10_ARATH (Probable zinc transporter 10 OS=Arabidopsis thaliana OX=3702 GN=ZIP10 PE=1 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 6.9e-10
Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = 0 

Query: 12  SIFLFLISFLTTQVVSQSNQCETTTNSCTNKDKATLSGGHF------------HGHHHRD 71
           ++F  ++  +TT V ++S + +   +   + +      GH             H  H  +
Sbjct: 137 AVFTLMVDSITTSVFTKSGRKDLRAD-VASVETPDQEIGHVQVHGXXXXXXXPHNLHGEN 196

Query: 72  IKELNVGSQLLRYRVIAMVLELGIVVHSVVIGLSLGATNDTCTIKGLV 108
            KEL    QLLRYR++A+VLELGIVV S+VIGLS+G TN+TCTIKGLV
Sbjct: 197 DKELGSYLQLLRYRILAIVLELGIVVQSIVIGLSVGDTNNTCTIKGLV 243

[Close]
BLAST of Carg21445-RA vs. Swiss-Prot
Match: sp|Q8W246|ZIP7_ARATH (Zinc transporter 7 OS=Arabidopsis thaliana OX=3702 GN=ZIP7 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.2e-07
Identity = 26/41 (63.41%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 67  SQLLRYRVIAMVLELGIVVHSVVIGLSLGATNDTCTIKGLV 108
           S+LLR +VIA +LELGIVVHSVVIGL++GA+++ CT++ L+
Sbjct: 204 SELLRNKVIAQILELGIVVHSVVIGLAMGASDNKCTVQSLI 244

[Close]
BLAST of Carg21445-RA vs. TrEMBL
Match: tr|A0A1S3C9F5|A0A1S3C9F5_CUCME (fe(2+) transport protein 1 OS=Cucumis melo OX=3656 GN=LOC103498287 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.5e-21
Identity = 83/227 (36.56%), Postives = 90/227 (39.65%), Query Frame = 0 

Query: 6   SLLKLISIFLFLISFLTTQVVSQSNQCETTTNSCTNKDKA-------------------- 65
           S  KLISIFLFL+ FL+ Q VSQS++CETT NSCTNK KA                    
Sbjct: 3   SFTKLISIFLFLLCFLSIQAVSQSDECETTVNSCTNKGKALRLKIIAIFSILIASVIGVG 62

Query: 66  ------------------------------------------------------------ 108
                                                                       
Sbjct: 63  SPLVTRSIPMLHPDRNMFVILKAFAAGIILATGFMHVLPDSFDMLWSNCLKENPWHKFPF 122

[Close]
BLAST of Carg21445-RA vs. TrEMBL
Match: tr|Q6PND8|Q6PND8_CUCSA (Iron regulated transporter OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.1e-20
Identity = 60/97 (61.86%), Postives = 70/97 (72.16%), Query Frame = 0 

Query: 13  IFLFLISFLTTQVVSQSNQC--ETTTNSCTNKDKATLSGGHFHGHHHRDIKELNVGSQLL 72
           + L + S  T+    + N+   E +     + +   +SGGHFHGHHH D KE N GSQLL
Sbjct: 133 VTLMVDSMATSLYTKKHNEVMPENSPRGGDDHELPVVSGGHFHGHHHMDTKETNAGSQLL 192

Query: 73  RYRVIAMVLELGIVVHSVVIGLSLGATNDTCTIKGLV 108
           RYRV+AMVLELGIVVHSVVIGLSLGATNDTCTIKGLV
Sbjct: 193 RYRVVAMVLELGIVVHSVVIGLSLGATNDTCTIKGLV 229

[Close]
BLAST of Carg21445-RA vs. TrEMBL
Match: tr|A0A0A0LYE2|A0A0A0LYE2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G707110 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.1e-20
Identity = 60/97 (61.86%), Postives = 70/97 (72.16%), Query Frame = 0 

Query: 13  IFLFLISFLTTQVVSQSNQC--ETTTNSCTNKDKATLSGGHFHGHHHRDIKELNVGSQLL 72
           + L + S  T+    + N+   E +     + +   +SGGHFHGHHH D KE N GSQLL
Sbjct: 133 VTLMVDSMATSLYTKKHNEVMPENSPRGGDDHELPVVSGGHFHGHHHMDTKETNAGSQLL 192

Query: 73  RYRVIAMVLELGIVVHSVVIGLSLGATNDTCTIKGLV 108
           RYRV+AMVLELGIVVHSVVIGLSLGATNDTCTIKGLV
Sbjct: 193 RYRVVAMVLELGIVVHSVVIGLSLGATNDTCTIKGLV 229


HSP 2 Score: 50.1 bits (118), Expect = 4.7e-03
Identity = 27/40 (67.50%), Postives = 30/40 (75.00%), Query Frame = 0 

Query: 6  SLLKLISIFLFLISFLTTQVVSQSNQCETTTNSCTNKDKA 46
          S  K  SIFLFLI F + Q VSQS++CETT NSCTNK KA
Sbjct: 3  SFTKPFSIFLFLICFFSIQAVSQSDECETTANSCTNKHKA 42

[Close]
BLAST of Carg21445-RA vs. TrEMBL
Match: tr|A0A218W5R7|A0A218W5R7_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr017554 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.1e-15
Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 0 

Query: 41  NKDKATLSGGHFHGHHHRDIKELNVGSQLLRYRVIAMVLELGIVVHSVVIGLSLGATNDT 100
           +++   ++ GHFHGHHH   K   V SQLLRYRV+AMVLELGIVVHSVVIGLS+GA+N+ 
Sbjct: 174 DREMGVIAAGHFHGHHHVAPKGDLVTSQLLRYRVVAMVLELGIVVHSVVIGLSMGASNNV 233

Query: 101 CTIKGLV 108
           CTIKGLV
Sbjct: 234 CTIKGLV 240

[Close]
BLAST of Carg21445-RA vs. TrEMBL
Match: tr|A0A2P5DLP1|A0A2P5DLP1_9ROSA (Zinc/iron permease OS=Trema orientalis OX=63057 GN=TorZIP5 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.1e-15
Identity = 51/104 (49.04%), Postives = 69/104 (66.35%), Query Frame = 0 

Query: 10  LISIFLFLISFLTTQVVSQSNQCETTTNSCT------NKDKATLSGGHFHGHHHRDIKEL 69
           L +I   ++  + T + S   +   T +  +      +++ A    GHFH HHH  +KE 
Sbjct: 132 LSAIITLMVDSMATSIYSNKCKAGVTPHQTSEVVPEGDQEMAVAGTGHFHAHHHGLVKEE 191

Query: 70  NVGSQLLRYRVIAMVLELGIVVHSVVIGLSLGATNDTCTIKGLV 108
            V +QLLRYRV+AMVLELGIVVHSVVIGLSLGA+N+TC+IKGL+
Sbjct: 192 GVQTQLLRYRVVAMVLELGIVVHSVVIGLSLGASNNTCSIKGLI 235

The following BLAST results are available for this feature:
BLAST of Carg21445-RA vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022927534.12.5e-3246.09probable zinc transporter 10 [Cucurbita moschata][more]
XP_023520364.11.6e-3145.65fe(2+) transport protein 1-like [Cucurbita pepo subsp. pepo][more]
XP_023001679.12.7e-3145.22probable zinc transporter 10 [Cucurbita maxima][more]
XP_022142414.17.5e-2136.52fe(2+) transport protein 1-like [Momordica charantia][more]
XP_008459065.19.8e-2136.56PREDICTED: fe(2+) transport protein 1 [Cucumis melo][more]
BLAST of Carg21445-RA vs. TAIR10
Match NameE-valueIdentityDescription
AT4G19680.23.3e-1561.76iron regulated transporter 2[more]
AT4G19690.21.1e-1390.24iron-regulated transporter 1[more]
AT1G31260.13.8e-1140.74zinc transporter 10 precursor[more]
AT2G04032.14.0e-0863.41zinc transporter 7 precursor[more]
AT2G32270.13.7e-0665.85zinc transporter 3 precursor[more]
BLAST of Carg21445-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O81850|IRT2_ARATH6.0e-1461.76Fe(2+) transport protein 2 OS=Arabidopsis thaliana OX=3702 GN=IRT2 PE=1 SV=1[more]
sp|Q38856|IRT1_ARATH1.9e-1290.24Fe(2+) transport protein 1 OS=Arabidopsis thaliana OX=3702 GN=IRT1 PE=1 SV=2[more]
sp|Q8S3W4|ZIP8_ARATH3.3e-1292.50Probable zinc transporter 8 OS=Arabidopsis thaliana OX=3702 GN=ZIP8 PE=3 SV=1[more]
sp|Q8W245|ZIP10_ARATH6.9e-1040.74Probable zinc transporter 10 OS=Arabidopsis thaliana OX=3702 GN=ZIP10 PE=1 SV=2[more]
sp|Q8W246|ZIP7_ARATH7.2e-0763.41Zinc transporter 7 OS=Arabidopsis thaliana OX=3702 GN=ZIP7 PE=2 SV=1[more]
BLAST of Carg21445-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C9F5|A0A1S3C9F5_CUCME6.5e-2136.56fe(2+) transport protein 1 OS=Cucumis melo OX=3656 GN=LOC103498287 PE=3 SV=1[more]
tr|Q6PND8|Q6PND8_CUCSA1.1e-2061.86Iron regulated transporter OS=Cucumis sativus OX=3659 PE=2 SV=1[more]
tr|A0A0A0LYE2|A0A0A0LYE2_CUCSA1.1e-2061.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G707110 PE=3 SV=1[more]
tr|A0A218W5R7|A0A218W5R7_PUNGR3.1e-1568.66Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr017554 PE=3 SV=1[more]
tr|A0A2P5DLP1|A0A2P5DLP1_9ROSA4.1e-1549.04Zinc/iron permease OS=Trema orientalis OX=63057 GN=TorZIP5 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0046873metal ion transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0030001metal ion transport
GO:0055085transmembrane transport
Vocabulary: INTERPRO
TermDefinition
IPR003689ZIP
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030001 metal ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0046873 metal ion transmembrane transporter activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg21445Carg21445gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg21445-RACarg21445-RA-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg21445-RA.CDS.4Carg21445-RA.CDS.4CDS
Carg21445-RA.CDS.3Carg21445-RA.CDS.3CDS
Carg21445-RA.CDS.2Carg21445-RA.CDS.2CDS
Carg21445-RA.CDS.1Carg21445-RA.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg21445-RA.exon.4Carg21445-RA.exon.4exon
Carg21445-RA.exon.3Carg21445-RA.exon.3exon
Carg21445-RA.exon.2Carg21445-RA.exon.2exon
Carg21445-RA.exon.1Carg21445-RA.exon.1exon


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003689Zinc/iron permeasePFAMPF02535Zipcoord: 38..110
e-value: 1.2E-11
score: 44.3
NoneNo IPR availablePANTHERPTHR11040:SF48FE 2+ TRANSPORT PROTEIN 1-RELATEDcoord: 48..110
NoneNo IPR availablePANTHERPTHR11040ZINC/IRON TRANSPORTERcoord: 48..110