Carg21187-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATTCGGCATCTCTGGCTTCTCTCGCGCCTTCTCTCGCGCCTTCTCATACGCCGCAGAATCTTCACAGAGTCTTCGTCTACGGTAGTCTCTTGTCTGATGAAGTCGTTCATATCCTCTTGAAGCGCACTCCTCAGTCCTCTGCTGCCGTCCTCAATGACTTGTTCGTTCTTTCATCTTCTATTCTTAATCTTTGATTTTCAAATCATCGCTGTTAGTTTCTTCTCTTTTGATGTATTCGAAGTAAAATCGTTCTGGTTTTCGAAATGAGATTTCGGTTCTCCATTTCAATCTTGTGATTTACTCGGATTTATGCTGTTTCTCTGTTTAATTCGTAGTTACTGAAGTACATGCACGTTCATCTTCTGCTAAATATTGTTAGAGAACTGTTTATGCTTGTTTCGGTTTTTCTAGGTTTTGGTGCTTAGTTGACATCAGCGTTATGATGAGAAAGAATTGCATTAGAAATATTCGTCTACTCTTAGCGTTTTGATTTGCTAAACGTCGCTGTTATTTCCTCTCTTTTTGGTAATTTTGGAGCGAAACTCGCATCGATGATAGGCTAATTCGTGCTGGTTTCGCATAGGAGAGTTTGATTTGCTACTCTTAGCGTTTTGATGAGAAAGAATTGCATTAGAAATATTCGTCTACTCTTAGCGTTTTGATTTGCTAAACGTCGCTGTTATTTCCTCTCTTTTTGGTAATTTTGGAGCAAAACTCGCATCGATGATAGGCTATTCGTGCTGGTTTCGCATAGGAGAGTTTGATTCGCTCTATCAATCTTATAGTCTACTCGATTGATGCTGTTTCTTTGTTTAATTCGTCTTTATAGAAGTTTGTGGATATTGATCATCTATTACTTATTGTTAGGGAACTGTTATGCTTCTTGTGATTTTCTAGGTTATATTTCGTAGTTAATGTTAACGCATATGATAAGAAAGGATTACTTTAGAAATATTCTTCTACATTTAAGCTTTTTGATTTGCAAATCACATGATTCTCTTGAATTTATTCTTCGTCACTGTTACTTTCTTCTCTTTTGATAGATTCGAGCAAAACTTTTGCATCGATGATAGTCCAAATTTGTGTCAGTTTCCTTAACGAGAGTTTGATTCACTGCATTGATGATTCGCTTGAATTTATGTTGTTCATTTGTTTAATTCTTCTTTTTAGAAGTTTACAGATGACGATCTCCAAATAATTAATACAAACTGTTATTGCATTGCTCTATGTGATTGCTCTAATTTTCAAGGTTTTGATTCTTAGCTTATACGATAAAGAAGGATTGTGTTGAAATATTCTTTTATTTCTCGCTTGTATTTCCAAATTCATGATTGAACTCTGTAAATTTGCTCGAGAATTTGCAGTCAAAGATTAAGCATTAAAGGACGAGTTTATCCAGCGATCATACCTGTTGATGGCAAGAAAGTATCTGGCAAGGTTTGTATACCATCGTGTGTTGAATGATTATTAATGAATCTGAACATTTTTCCATATCATTTTATGGTTTTCATATTGAACTATCCTGTACTCTTACCAACTATCCCTTACACTGCAGGTTCTTTCAGGCATCACAGCCACCGAATTGGATATTTTAGACGCATTTGAGGATGTTGAATACAAAAGGAGCACAGTTGAGGTCTCTTTAACGGTAAACTATTTGACTCATTTTGGTGCTTAAATGTCCTTTATTATCAACTACTTTGTACTAGATTTGGTCATTGAATCGGAAAACATAGATCCATTCTGATCAAGTACGCACTACTATAAAATAGTACCCTTTTGGAATTTGTTTTTATAACTTGCTATACAAACATATCAGTAGTTCTTTTAGGAATCCGACTCTCCACAATGGTATGATATTGTCTACTTTGAGCATATGCTCTCGTGGCTTTGCTTTGGGCTTCCCCAAAAAGCCTCATACCAATGGAGAGAGTATTCTTTGATTATAAACCATGAACATTTCCTAAATTAGCCGATGTGGGACTTTCATCCAACACCTCCTCTTAAACAAAGTACGCCTCTCCTTAGTTGAGTCTCGACTCTTTCTTTTGGAGTCTTCATCATTTTTTACTATTTGACATGACTAAGTTTAGGGCATGACTTTGATACCATGTTAGGAATCACAACTCTTCACAGTGGTATGATATTGTCCATGAGTATAAGCTCTCATGGTTTTGCTTTGGGCTTCCCCAAAAGGTCTCATCTCCTATCAATGGAGAGAGTATTCCTTGATTATAAACCCCTAAATTAGCCAATGTGGGACTTTCATCCAACAATTACTACCCATCAGTAAATTGCTTAGAAGCTAATGAAAAGCTTAATGAACATTGAGATCACTTTTCATTCTATTGCGCTGCAAATATTTCTTATGGGGTTCATACCACTTAATTATTTATGCTAATGAAGATAGTCGAAACATATGTATATTTAATCCTCTCCACGATTGTGCTTTCTGATCTTTTTTTAGGCTATAGATGACCTTTTGCTGGACAGTCTTGAGAAGTTATTAGTTTATGTCTATATTTGGAACAACGAAAGGGATCCAGACCTGTATGAAGATTGGGATTTTGAGGTAAAAACTTAATCCTTTGTTGTTCCACTACACAGTATAACATTTATACATCATACCACGGAGAAGAAACTTTTCTGTTTTTGACCACTCATTTCACATGTTCTTGTGCACTGGGATCAGGGCATCTGTTCTTATAGGGTTCACCAATGATTCAATCGTATACCAATATAAGAAATAAATTGAATCAAGTCTTAATTTAGTTACTTCCTTGTGTTTATATCATAAATCAGATGATCAGATGCATGATATTGTCCAATTTGAGCATAAGCTCTCGTGACTTTATTTTGGTCTTTCTCAAAAGGCCTCACTCTAACGTAGATATATTCCTTTACTTATAAACCCATGAACATTCTCTAAATTAGTCAATGTGTGACTCACTCCCAACAATGTATTGATGGAGATTTCTTAAATTTAATCTTAATTTCCTTGATAGGTTTTGGTTAGTTCTGTCCTCTGACCATAGTTCCAATAATGAACATTTTGTATCTCTGCTAAAATAAGGGGAATCTTGTCTGCGGTGATTTTGTAATTTTCTTTTTCCTCGTCTTGCATTTGCTTGTACGTGAGAATCTTGTCAGCGGTGATTTTGTATTTTTATTTTATTTTTTTTTTTTTTTTTTTTTTTTTGTCTTGGTCAGAACTTGGGAAGTAAAAAAGCGCGATGTATAATGTTATTCTTTATATTCCCATTCGTTTTGAAATCTGAATAATTTTATGTACTGCGAATCTTAAGGAGTGGAAGCGAGATCATCTGGATGCTTACCTGGAGATGGTCAATGAGTTTATAGAAGAATTTGAGCATCAGCCCCCAAAAGAACCATGCGCGGCCGTTGATGAAGCAGGACAGCGATGCGAACAACCACTCCACTCTCCAGGTAGCAGTAATACCACTTCCAAACGTATTTTCATGCTAATACATAATCCTTCTATTTGTCATTCACACACCAATTTTTTGCGGATTAATTATTGCTTATTTTTCAAAAAAAAAAAAAAAAATTAAAATTAAAATTTTGGCTAAATTAATAAAAATACTGCATAACTTTGTAATTTGTCATAAAATATCTATCTCCTAACTTTTAGATGTATTCACCCTTAATTTTAAAAACAAACAAAAAAAAATACCTTTATCTGGATGAAACTATTAGTATACCCTCAAAAGCACTTTTAAAAACTTAACTTGAATTTTTAAAACATTTAGAAATCCATAGATAAAAGTGGTATTAAAAATAAAAAACAACAATCAAATGTCTATCAAATCTTAAATATTTCATTTTTTTTTTTTAAATATTTTGAAATGAATTAAACCCGACATTCAAAGTAGTTTGTTCATGAAAGCACTTTTAAAAATTATCCTGATACATGATTTCTGGCCTCAACTTCAATAACACTTGAAAGTTAAGTCTCTTGTATTTTTAACATAAAACACTTGGTTATTTATTATTATTTCTTTCTATACTTAGTTGTTGTGATATGTTTGTATTTAATAGATTTTTAAAATTTTTAAAAGTATTTAACATTATGTCTAATAGGTCTCTAAAAATGTTAAAAATAAATATATTTGAACTTTTAATTTAGATAGCATGTCCAACATTTTTTCTATATTGATGTGAAATAAAAATTCTATTCAATAGGACATTAAATTTTTAATTTTCTGTTTGATATATTAGCGATTTTTTTTTATTTTTTTTTTAAGAAATTAGGGGGATAAAAAATTTATTAGACACCAAAGACTTTTTTAGTAAAGCTAGAAGACTTGCACAAAATCGAAAAATTAGTGATTTAGTAGATATTTTTTTTAAAAAAAAAAAGTTAATTCAATTCAAGTACCCATTGCAAGGGACCTTTCTTCCCCCAATTTTTTCTTCTGAAGATAGGAAAGGAAAATAAAAGAGGATTCATTAGCAATGATACAAATAAATCAGAAACCAAAATCTCAAATTTTCTTATGAAAAAACTTTGTTAGTGCCGATGCGTAAATCTTTTAGCTTTCTTGAAATATGGCTTAATTTAAAATATGAGAGACCTGTCAACTTATTCTTAAATGTCTAAACTTTCCAGCACAAGAAGAAGAAGAACCTTCGAAACTAAACGGCGAGTAACCTGTTGCAGCTTCGTACCTCTGCTGAATCTGGTTGGATTGACCAGAACCCACAGTAACTCAAGTTTTAGGCCACTCGGTATTGCTTTCAAAATACTTTTTAAGTCTCCTCTCTTTGCACTCGACTCCGTATTGCTTTCAAAACAAGACAATTTCAATATTAATTTGAATCTAATTCAATCC ATGGATTCGGCATCTCTGGCTTCTCTCGCGCCTTCTCTCGCGCCTTCTCATACGCCGCAGAATCTTCACAGAGTCTTCGTCTACGGTAGTCTCTTGTCTGATGAAGTCGTTCATATCCTCTTGAAGCGCACTCCTCAGTCCTCTGCTGCCGTCCTCAATGACTTGTTCGAGTGGAAGCGAGATCATCTGGATGCTTACCTGGAGATGGTCAATGAGTTTATAGAAGAATTTGAGCATCAGCCCCCAAAAGAACCATGCGCGGCCGTTGATGAAGCAGGACAGCGATGCGAACAACCACTCCACTCTCCAGCACAAGAAGAAGAAGAACCTTCGAAACTAAACGGCGAGTAACCTGTTGCAGCTTCGTACCTCTGCTGAATCTGGTTGGATTGACCAGAACCCACAGTAACTCAAGTTTTAGGCCACTCGGTATTGCTTTCAAAATACTTTTTAAGTCTCCTCTCTTTGCACTCGACTCCGTATTGCTTTCAAAACAAGACAATTTCAATATTAATTTGAATCTAATTCAATCC ATGGATTCGGCATCTCTGGCTTCTCTCGCGCCTTCTCTCGCGCCTTCTCATACGCCGCAGAATCTTCACAGAGTCTTCGTCTACGGTAGTCTCTTGTCTGATGAAGTCGTTCATATCCTCTTGAAGCGCACTCCTCAGTCCTCTGCTGCCGTCCTCAATGACTTGTTCGAGTGGAAGCGAGATCATCTGGATGCTTACCTGGAGATGGTCAATGAGTTTATAGAAGAATTTGAGCATCAGCCCCCAAAAGAACCATGCGCGGCCGTTGATGAAGCAGGACAGCGATGCGAACAACCACTCCACTCTCCAGCACAAGAAGAAGAAGAACCTTCGAAACTAAACGGCGAGTAA MDSASLASLAPSLAPSHTPQNLHRVFVYGSLLSDEVVHILLKRTPQSSAAVLNDLFEWKRDHLDAYLEMVNEFIEEFEHQPPKEPCAAVDEAGQRCEQPLHSPAQEEEEPSKLNGE
BLAST of Carg21187-RA vs. NCBI nr
Match: XP_022981675.1 (AIG2-like protein D isoform X1 [Cucurbita maxima]) HSP 1 Score: 172.2 bits (435), Expect = 1.1e-39 Identity = 107/205 (52.20%), Postives = 108/205 (52.68%), Query Frame = 0
BLAST of Carg21187-RA vs. NCBI nr
Match: XP_022981676.1 (AIG2-like protein D isoform X2 [Cucurbita maxima]) HSP 1 Score: 163.7 bits (413), Expect = 3.8e-37 Identity = 105/205 (51.22%), Postives = 106/205 (51.71%), Query Frame = 0
BLAST of Carg21187-RA vs. NCBI nr
Match: XP_022940148.1 (AIG2-like protein D [Cucurbita moschata]) HSP 1 Score: 161.0 bits (406), Expect = 2.4e-36 Identity = 105/205 (51.22%), Postives = 107/205 (52.20%), Query Frame = 0
BLAST of Carg21187-RA vs. NCBI nr
Match: XP_023524381.1 (AIG2-like protein D [Cucurbita pepo subsp. pepo]) HSP 1 Score: 146.7 bits (369), Expect = 4.7e-32 Identity = 101/213 (47.42%), Postives = 102/213 (47.89%), Query Frame = 0
BLAST of Carg21187-RA vs. NCBI nr
Match: XP_004136304.2 (PREDICTED: AIG2-like protein isoform X1 [Cucumis sativus] >KGN60188.1 hypothetical protein Csa_3G882990 [Cucumis sativus]) HSP 1 Score: 77.0 bits (188), Expect = 4.6e-11 Identity = 57/164 (34.76%), Postives = 66/164 (40.24%), Query Frame = 0
BLAST of Carg21187-RA vs. TAIR10
Match: AT2G24390.1 (AIG2-like (avirulence induced gene) family protein) HSP 1 Score: 45.1 bits (105), Expect = 3.5e-05 Identity = 19/33 (57.58%), Postives = 27/33 (81.82%), Query Frame = 0
BLAST of Carg21187-RA vs. Swiss-Prot
Match: sp|A8MRP2|AIGLD_ARATH (AIG2-like protein D OS=Arabidopsis thaliana OX=3702 GN=AIG2LD PE=2 SV=1) HSP 1 Score: 45.1 bits (105), Expect = 6.4e-04 Identity = 19/33 (57.58%), Postives = 27/33 (81.82%), Query Frame = 0
BLAST of Carg21187-RA vs. TrEMBL
Match: tr|A0A0A0LEJ1|A0A0A0LEJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G882990 PE=4 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 3.1e-11 Identity = 57/164 (34.76%), Postives = 66/164 (40.24%), Query Frame = 0
BLAST of Carg21187-RA vs. TrEMBL
Match: tr|A0A1S3CQU6|A0A1S3CQU6_CUCME (AIG2-like protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503732 PE=4 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 7.5e-10 Identity = 55/163 (33.74%), Postives = 64/163 (39.26%), Query Frame = 0
BLAST of Carg21187-RA vs. TrEMBL
Match: tr|A0A0A0LHH1|A0A0A0LHH1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G882980 PE=4 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 4.9e-09 Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 0
BLAST of Carg21187-RA vs. TrEMBL
Match: tr|A0A1S3CQV8|A0A1S3CQV8_CUCME (AIG2-like protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503732 PE=4 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 4.1e-08 Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = 0
BLAST of Carg21187-RA vs. TrEMBL
Match: tr|A0A1S4E5V6|A0A1S4E5V6_CUCME (protein AIG2-like OS=Cucumis melo OX=3656 GN=LOC103503731 PE=4 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 2.7e-07 Identity = 51/162 (31.48%), Postives = 63/162 (38.89%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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