Carg20893-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTAGGTCAAAGCAGAAAAATCTCATCACCGACGAGACCAGAGATGATTGGCAAGGAAGAGCAAACTGATAGAACTGTGATTGGGTTAAAATGGCGGATTGATTACCAATTGTTGCAGTCACCATTACAATCGTGTACAGCGTAAAAGCCTTTCTCCAATTCACGCGCACAATTCTAGCCACAATTATAAACAACCCTTCTTCTCCTACTCTCGAGACTGCCTTTTTCGTTTTTCCCCCATGCTGTTTACCTCATCACCATCATCATTTTCTTCTTGGGGGGACAGAGATTGTGTTTGGAAGTAGAATTTCTGCGTTTCTGTCTCTAAATGGCTGATGTTTTTAGATTTTCCTCGCATTCTTTCTGTTTCCCATCCACTTCTTTCCCTGCCTCCTTTGCTTCATCCTGCAATTCTATTCAGACTTGTCTTCCACCCATTCAAAGCTCGGATAAGAGGTCGACTTCTCTGCCGCGCTACTCTACTAGCTTTGTAATGCCTCTTTCTTTCACACCCAGAAAGAGGTTGGTATCTTTCAAGGTACACAGCTGTTCTTTTGGTTGGATTTATAATTGTTGAGATTTTCATTCTTTTTTTATATGAATTTAGTTGCCAGCAAGAACCTGTTTGTTGGGCTTGTTTGAATTTTATTTTCAATTTGAGATTCCATGTGCTGAATTGGAATTTGAGAAGGTTCTGTACAACCCTAATTGTGAGACCCACTAAGTTCAAGTTTTCCCTAGGTAGTTGATGCTTGTACTTTTATCTGTTAAAAGAACTAGCTACATTGCTTTGCCAACAATTCTTTCCCATATGCATTCAATTCTTAGTTGACAGTTCTAGTCTGTTCTACGAAGTTGTTTATATTCCTGTCTAGCCTGATGCTGGTTAAATCTAAAGAGACACTTAATTTTATGGTTGATTAAACCATAAGGAGCCATGTTTTCTCTTCATATCTCTTTAAAGTTCCTTCAGATCTGGCTATAGCTTTTGGGAAGATTTTTGGTTATGAACGAGGGGACTGAACACCTTGTTACTTGGAGAGTTCTTTATTTTCATATTGAGTTATGAGGCTTTTGGGGACTGGTAAAATTTGAAATAGAAGCATGGCCATGATTACCAAATGGCAGTGGGGTACAAGAAGAGAAGTAGTCGAACGCCAGCACCCTTTAGGCACAGAATTCTCGCCAGTAAATATGATGCAAGTCCTATGTGATTGTTCATTGGAAACATATCTCTGAACAGTTGTTGCCTTTGGATTTTCACTGCTAGCTGTGAAATTTATCTGAGACTGGAAGCTTTCTTAATGGCTGAGAACCATTGTATAATTGGATTTTGAAAGGATGCTTGGTTGGATAGGAACTTCAATTTTCATAATGCTTTTCCTTAACTTTATGCTCAGCTGACTTGTTTTAGATGTTTCTAAAAGGCCCGAGCAGAGATAACTTGTGGAGAAGGACCTTACATTTCAAAGTTCCTTTAACGAGAGAGATTACTAGTAGGCTTACATCTTGACAACATGGAAGGTTTTCATATAACTCATAGTTTTGATTCAAAATACTGGAAGTAGGAGAGTTCTAGTATCCTTCCATGCAAATTTCTTCTTGATTACCTTATTGGCTATTGCATGCCTGCAAGCTCCCATAGGCAATGAGCAGCTCGCAAAATTATCGTTCAGTTTGTAGCGTTGAGACTACATATATGTAAATTTCTTTTGTGTGGAAAACATGACAACTTCTTGTAATTTCTCCTTCGATTTCTGAGGGCAGGAGGCTGTACTATTTTCCCTGCTTTTCCTTTTATACATGATTATCTGTTTAAAAATGTTTCTTACTCAAACAAAATAGATGTCAATCATTTTCCGGATGCCGCCTGTTAACTGTTCTATGATGCCACAGGTACAGGCAGCTGTGGCTGAAAAAGACCAGCCAAAATGGTGGGAAAAGAGTGCACCAAACATGATTGATATACATTCGACACAGGAATTTTTAACTGCATTGAGTGAATCTGGTGATAGATTAGTTATTGTAGATTTTTACGGAACCTGGTGTGCTTCCTGCAGGGCATTATTTCCCCGGGTAACTTTCTTCATCAATGCTTTAGATTTCTTCAGATTGTGATGTTGGTCTGTTTTAAGTGTATCATGATATAAGACTTGATTCCATCAATGGAGCATGTTCTGAAACTCGATTTGGACCAGCTTATTGAACAAGTAGGCATTAAATGACTGCTGCATTTGTTAGCTAGCTATCAAGATGAAAATCTTCAAAATACACTTTGCAGTATTTTTAGATGCCTTGCAGGTTTCTACCTATCTATGTTACTGAGGTTGAAACTGTAGACAATTGCTCAATCCTTTAAAAAATTGGTAATCAAAAACTCTGCGCCAAATATATATATATTTTTTATATGAAACAATTTCATTGATGTATGGAATTTACTAAAAGGATGGTTTGTCCACTGTGATTACAAAAAGCTTTTCCAATTGGTTAAAAGAGAAGCATTAGTGTATGAAGCATACCTCTGCTCAATATTTGATATCTCAAGTTGCTAATCTCAAAATACTCTGCATTCCTTTATTGGTTTTCTGCTGCAGTAGCTGTTCTGTCATTATTTGTAGCTTTAGTTATAATAAGAAAGCTCCAGAGCAGTTCTTATTTGTTCGGTCATTCTTTCGAATGCTTCCCACATTAAATGATTGATATTCATTGGATTTAACATTTGTTGTTTCCTAAAAAGGAAAGGCATCTTACAGCAAAATCTGAACTTGCAATTATTGTTCTTATTAGAAATTTTAGTCGCCTGTTTTATGTTTTGACGTTTGTATATATGTTGAAATGGAACTGTCAGCTATGCAGAACAGCTGATGAGCACCCTGAGATTTTATTCCTGAAAGTCAACTTTGATGAAAACAAGCAAATGTGCAAAAGTTTGAATGTCAAGGTCCTTCCTTATTTCCATTTTTATCGTGGAGCTGATGGACAATTGGAGTCCTTCTCATGCTCACTCGCAAAGGTTAGCATCCTCCTCCCTCCCCCTCCCCCCATCTCATATGTGAACAATTCATACTATTTTATTGGTTTAGCTTATAACAAACACAATGTAGGTTAAAATATAAATAGATTTTTGTGAGACCCCACGAGAGGGGAATGTACAAACACAATGTAGGTTAAAATATAAATAGATTTTTGTGAGACCCAACGAGAGGGGAATGAAACATTCCTTGCAAGGGTGTGGAAACCTCTCCTTAGTAGACGCGTTTTAAAGCTTTAAGGGGAAGGCCAAGAGGAAAAGCCCAAAGAGACAATATTTGTTAGCGGTGGGCTTGGTATTAGAGCCAGATACCAGGCGGTGTGCTAGCAAGACACTGGGCCCCCAAGGGGGTGGATTGTGAAATCCCACATTGATTGGAGAGGGACACGAAACATTTCTTATAAGGGTGTGGAAACCTTTACCTAGTGACGTGTTTTCAAACTTTGAGGGGAAGTCCAAAAGGGAAAGCTCCAAGAGGACAATATTTGCTAGCGGTGGGCTTGGTTTGTTACAATTTTCGAGTCATAGATGTGAATGTGCTAGAAGGATTGATGTGGATCTCTAATATGATGTGGATCTCTAATATGGACTGAAAACTTTCCGTATCCCAAATTTGGAAAACTATACTAAGTGTTTGATCTCATGGCAGGCATTGATTATCAATATATGAAGGAATGCCATCATTCTACTTACTCTATCTAACCTTTCTCCTTCCCACAGTTCCAGAAAATTAAAGATGCAATTAAAATGCACAACACAGCTCGTTGCAGCATTGGGCCGCCAAGGGGAGTAGGAGATCTTGTACTGGAGCCCTCCTTGAGTCCCAAGGACAAACAACAAACAGAAGCTTCTTCATCATAGACTTGCTCCCAAATGCCCATCGGTACCATTGTGCATTCCCCTACTATTAATATAACCTAGCAGTCAGCTTTCCAATCTGTAAATTTGCATTCTTGTGAAATATTTTGCTGCCTTCTTCTGCTACTTTTGATGTTTTTACTTTGAAACTGGTGATCTTGGATCTAGTTTTAAATACATGCCATTGATTCATTTGGTTTGATGGGCAGAGGCTTGCATATTCTTAAAATTTAGTCCAGAATTTGTCAGATCTCTACTGTACTTTTAAGTTACTGCTAGGTTCAAATCTTTACTCTGCCTTTGTGATTCATACTAAGACTTGAAATGGAGAGCTCTGATTAAGAAGCTTAACTATGAACAACTTGCTATGTGCAGGTATCATTCATAATGAAACTCTCTTTTACGTCTGCATGGTCTTGCATGTCAAAGAAGCAGTAGTTTCGCCGTTCGTGTCGGTCAATGGCTAAATTTTGATGGCTCTGTTGATTTAATCTCTAAATAGTTCAGTGTTTTAGTTACATTTCGTTACTTTATTTCTCAACTTTTAATTGTGATTTTATCCTCTAATCCTTGGTAATAATATAAATTTATTTATTTAGAAAGTTTATAATT TTAGGTCAAAGCAGAAAAATCTCATCACCGACGAGACCAGAGATGATTGGCAAGGAAGAGCAAACTGATAGAACTGTGATTGGGTTAAAATGGCGGATTGATTACCAATTGTTGCAGTCACCATTACAATCGTGTACAGCGTAAAAGCCTTTCTCCAATTCACGCGCACAATTCTAGCCACAATTATAAACAACCCTTCTTCTCCTACTCTCGAGACTGCCTTTTTCGTTTTTCCCCCATGCTGTTTACCTCATCACCATCATCATTTTCTTCTTGGGGGGACAGAGATTGTGTTTGGAAGTAGAATTTCTGCGTTTCTGTCTCTAAATGGCTGATGTTTTTAGATTTTCCTCGCATTCTTTCTGTTTCCCATCCACTTCTTTCCCTGCCTCCTTTGCTTCATCCTGCAATTCTATTCAGACTTGTCTTCCACCCATTCAAAGCTCGGATAAGAGGTCGACTTCTCTGCCGCGCTACTCTACTAGCTTTGTAATGCCTCTTTCTTTCACACCCAGAAAGAGGTTGGTATCTTTCAAGGTACAGGCAGCTGTGGCTGAAAAAGACCAGCCAAAATGGTGGGAAAAGAGTGCACCAAACATGATTGATATACATTCGACACAGGAATTTTTAACTGCATTGAGTGAATCTGGTGATAGATTAGTTATTGTAGATTTTTACGGAACCTGGTGTGCTTCCTGCAGGGCATTATTTCCCCGGCTATGCAGAACAGCTGATGAGCACCCTGAGATTTTATTCCTGAAAGTCAACTTTGATGAAAACAAGCAAATGTGCAAAAGTTTGAATGTCAAGGTCCTTCCTTATTTCCATTTTTATCGTGGAGCTGATGGACAATTGGAGTCCTTCTCATGCTCACTCGCAAAGTTCCAGAAAATTAAAGATGCAATTAAAATGCACAACACAGCTCGTTGCAGCATTGGGCCGCCAAGGGGAGTAGGAGATCTTGTACTGGAGCCCTCCTTGAGTCCCAAGGACAAACAACAAACAGAAGCTTCTTCATCATAGACTTGCTCCCAAATGCCCATCGGTACCATTGTGCATTCCCCTACTATTAATATAACCTAGCAGTCAGCTTTCCAATCTGTAAATTTGCATTCTTGTGAAATATTTTGCTGCCTTCTTCTGCTACTTTTGATGTTTTTACTTTGAAACTGGTGATCTTGGATCTAGTTTTAAATACATGCCATTGATTCATTTGGTTTGATGGGCAGAGGCTTGCATATTCTTAAAATTTAGTCCAGAATTTGTCAGATCTCTACTGTACTTTTAAGTTACTGCTAGGTTCAAATCTTTACTCTGCCTTTGTGATTCATACTAAGACTTGAAATGGAGAGCTCTGATTAAGAAGCTTAACTATGAACAACTTGCTATGTGCAGGTATCATTCATAATGAAACTCTCTTTTACGTCTGCATGGTCTTGCATGTCAAAGAAGCAGTAGTTTCGCCGTTCGTGTCGGTCAATGGCTAAATTTTGATGGCTCTGTTGATTTAATCTCTAAATAGTTCAGTGTTTTAGTTACATTTCGTTACTTTATTTCTCAACTTTTAATTGTGATTTTATCCTCTAATCCTTGGTAATAATATAAATTTATTTATTTAGAAAGTTTATAATT ATGGCTGATGTTTTTAGATTTTCCTCGCATTCTTTCTGTTTCCCATCCACTTCTTTCCCTGCCTCCTTTGCTTCATCCTGCAATTCTATTCAGACTTGTCTTCCACCCATTCAAAGCTCGGATAAGAGGTCGACTTCTCTGCCGCGCTACTCTACTAGCTTTGTAATGCCTCTTTCTTTCACACCCAGAAAGAGGTTGGTATCTTTCAAGGTACAGGCAGCTGTGGCTGAAAAAGACCAGCCAAAATGGTGGGAAAAGAGTGCACCAAACATGATTGATATACATTCGACACAGGAATTTTTAACTGCATTGAGTGAATCTGGTGATAGATTAGTTATTGTAGATTTTTACGGAACCTGGTGTGCTTCCTGCAGGGCATTATTTCCCCGGCTATGCAGAACAGCTGATGAGCACCCTGAGATTTTATTCCTGAAAGTCAACTTTGATGAAAACAAGCAAATGTGCAAAAGTTTGAATGTCAAGGTCCTTCCTTATTTCCATTTTTATCGTGGAGCTGATGGACAATTGGAGTCCTTCTCATGCTCACTCGCAAAGTTCCAGAAAATTAAAGATGCAATTAAAATGCACAACACAGCTCGTTGCAGCATTGGGCCGCCAAGGGGAGTAGGAGATCTTGTACTGGAGCCCTCCTTGAGTCCCAAGGACAAACAACAAACAGAAGCTTCTTCATCATAG MADVFRFSSHSFCFPSTSFPASFASSCNSIQTCLPPIQSSDKRSTSLPRYSTSFVMPLSFTPRKRLVSFKVQAAVAEKDQPKWWEKSAPNMIDIHSTQEFLTALSESGDRLVIVDFYGTWCASCRALFPRLCRTADEHPEILFLKVNFDENKQMCKSLNVKVLPYFHFYRGADGQLESFSCSLAKFQKIKDAIKMHNTARCSIGPPRGVGDLVLEPSLSPKDKQQTEASSS
BLAST of Carg20893-RA vs. NCBI nr
Match: XP_022938368.1 (thioredoxin-like 2, chloroplastic [Cucurbita moschata] >XP_022938377.1 thioredoxin-like 2, chloroplastic [Cucurbita moschata]) HSP 1 Score: 467.6 bits (1202), Expect = 2.4e-128 Identity = 229/231 (99.13%), Postives = 229/231 (99.13%), Query Frame = 0
BLAST of Carg20893-RA vs. NCBI nr
Match: XP_023540945.1 (thioredoxin-like 2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023540946.1 thioredoxin-like 2, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 467.6 bits (1202), Expect = 2.4e-128 Identity = 230/231 (99.57%), Postives = 230/231 (99.57%), Query Frame = 0
BLAST of Carg20893-RA vs. NCBI nr
Match: XP_022974950.1 (thioredoxin-like 2, chloroplastic [Cucurbita maxima] >XP_022974951.1 thioredoxin-like 2, chloroplastic [Cucurbita maxima] >XP_022975451.1 thioredoxin-like 2, chloroplastic [Cucurbita maxima] >XP_022975452.1 thioredoxin-like 2, chloroplastic [Cucurbita maxima]) HSP 1 Score: 453.8 bits (1166), Expect = 3.6e-124 Identity = 221/224 (98.66%), Postives = 221/224 (98.66%), Query Frame = 0
BLAST of Carg20893-RA vs. NCBI nr
Match: XP_004133814.1 (PREDICTED: thioredoxin-like 2, chloroplastic [Cucumis sativus] >KGN56427.1 hypothetical protein Csa_3G119600 [Cucumis sativus]) HSP 1 Score: 403.3 bits (1035), Expect = 5.6e-109 Identity = 196/224 (87.50%), Postives = 209/224 (93.30%), Query Frame = 0
BLAST of Carg20893-RA vs. NCBI nr
Match: XP_008437900.1 (PREDICTED: thioredoxin-like 2, chloroplastic [Cucumis melo]) HSP 1 Score: 403.3 bits (1035), Expect = 5.6e-109 Identity = 195/224 (87.05%), Postives = 209/224 (93.30%), Query Frame = 0
BLAST of Carg20893-RA vs. TAIR10
Match: AT4G26160.1 (atypical CYS HIS rich thioredoxin 1) HSP 1 Score: 230.7 bits (587), Expect = 9.0e-61 Identity = 105/146 (71.92%), Postives = 123/146 (84.25%), Query Frame = 0
BLAST of Carg20893-RA vs. TAIR10
Match: AT4G29670.2 (atypical CYS HIS rich thioredoxin 2) HSP 1 Score: 230.7 bits (587), Expect = 9.0e-61 Identity = 118/186 (63.44%), Postives = 145/186 (77.96%), Query Frame = 0
BLAST of Carg20893-RA vs. TAIR10
Match: AT2G33270.1 (atypical CYS HIS rich thioredoxin 3) HSP 1 Score: 149.8 bits (377), Expect = 2.0e-36 Identity = 65/164 (39.63%), Postives = 108/164 (65.85%), Query Frame = 0
BLAST of Carg20893-RA vs. TAIR10
Match: AT1G08570.1 (atypical CYS HIS rich thioredoxin 4) HSP 1 Score: 147.5 bits (371), Expect = 1.0e-35 Identity = 62/129 (48.06%), Postives = 93/129 (72.09%), Query Frame = 0
BLAST of Carg20893-RA vs. TAIR10
Match: AT5G61440.1 (atypical CYS HIS rich thioredoxin 5) HSP 1 Score: 144.4 bits (363), Expect = 8.5e-35 Identity = 67/177 (37.85%), Postives = 107/177 (60.45%), Query Frame = 0
BLAST of Carg20893-RA vs. Swiss-Prot
Match: sp|Q5TKD8|TRL2_ORYSJ (Thioredoxin-like 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0200100 PE=2 SV=1) HSP 1 Score: 259.2 bits (661), Expect = 4.3e-68 Identity = 122/155 (78.71%), Postives = 137/155 (88.39%), Query Frame = 0
BLAST of Carg20893-RA vs. Swiss-Prot
Match: sp|Q8LEK4|TRL21_ARATH (Thioredoxin-like 2-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g26160 PE=2 SV=2) HSP 1 Score: 230.7 bits (587), Expect = 1.6e-59 Identity = 105/146 (71.92%), Postives = 123/146 (84.25%), Query Frame = 0
BLAST of Carg20893-RA vs. Swiss-Prot
Match: sp|Q8LCT3|TRL22_ARATH (Thioredoxin-like 2-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g29670 PE=2 SV=2) HSP 1 Score: 230.7 bits (587), Expect = 1.6e-59 Identity = 118/186 (63.44%), Postives = 145/186 (77.96%), Query Frame = 0
BLAST of Carg20893-RA vs. Swiss-Prot
Match: sp|Q10M18|TRL12_ORYSJ (Thioredoxin-like 1-2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0326500 PE=2 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 7.1e-39 Identity = 78/171 (45.61%), Postives = 111/171 (64.91%), Query Frame = 0
BLAST of Carg20893-RA vs. Swiss-Prot
Match: sp|Q6Z4N3|TRL11_ORYSJ (Thioredoxin-like 1-1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0684100 PE=2 SV=1) HSP 1 Score: 150.2 bits (378), Expect = 2.8e-35 Identity = 63/129 (48.84%), Postives = 93/129 (72.09%), Query Frame = 0
BLAST of Carg20893-RA vs. TrEMBL
Match: tr|A0A1S3AV76|A0A1S3AV76_CUCME (thioredoxin-like 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483190 PE=4 SV=1) HSP 1 Score: 403.3 bits (1035), Expect = 3.7e-109 Identity = 195/224 (87.05%), Postives = 209/224 (93.30%), Query Frame = 0
BLAST of Carg20893-RA vs. TrEMBL
Match: tr|A0A0A0L760|A0A0A0L760_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119600 PE=4 SV=1) HSP 1 Score: 403.3 bits (1035), Expect = 3.7e-109 Identity = 196/224 (87.50%), Postives = 209/224 (93.30%), Query Frame = 0
BLAST of Carg20893-RA vs. TrEMBL
Match: tr|A0A2I4GPQ6|A0A2I4GPQ6_9ROSI (thioredoxin-like 2, chloroplastic OS=Juglans regia OX=51240 GN=LOC109009734 PE=4 SV=1) HSP 1 Score: 342.4 bits (877), Expect = 7.8e-91 Identity = 173/230 (75.22%), Postives = 191/230 (83.04%), Query Frame = 0
BLAST of Carg20893-RA vs. TrEMBL
Match: tr|A0A2P4IMZ5|A0A2P4IMZ5_QUESU (Isoform 2 of thioredoxin-like 2-2, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_29433 PE=4 SV=1) HSP 1 Score: 335.1 bits (858), Expect = 1.2e-88 Identity = 168/233 (72.10%), Postives = 193/233 (82.83%), Query Frame = 0
BLAST of Carg20893-RA vs. TrEMBL
Match: tr|M5W3A5|M5W3A5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G211300 PE=4 SV=1) HSP 1 Score: 327.8 bits (839), Expect = 2.0e-86 Identity = 166/232 (71.55%), Postives = 188/232 (81.03%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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