Carg20580-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20580-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	MADS-box transcription factor
Location	Cucurbita_argyrosperma_scaffold_113 : 430282 .. 431121 (-)
Sequence length	579

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGAGGTAAGGTGGAGCTGAAGAAGATAGAGAACAAAATAAACCGACAGGTAACCTTCACTAAACGAAGAAATGGCCTTCTTAAAAAGGCTTATGAGCTCTCCATTTTGTGTGATGCTGAGGTGGCACTCATCGTCTTCTCCACCGGTGGCAAGCTCTATGAATTCTCCAGCTCTTCCAGGCATGTCTCGATTCGAATCTCTAACCTTTTTTGCTCGGAGCGTTCGTGTAGCTCCGTGCTTGATTTGATCTGTTTATGTCGAACTCGAGACGGGTTCTTTTCGTTAACCAATTGCAGTATAGCCAAGACGTTGGAGAGGTATCAAAGACATAGCTATGGAGCTTTGGCAGCCTCCCATCATCTCAAGGACACCGAGGTCATTTCTCGTCTTTGCTCGATTAGGTTTAGTTATATAAAATGAGACCCGTTTCAATTATGTTCGGTAAAAGTGATTTTAACTATTTCAAAATTACTCTCGTGCCCTTGGTCGGAATGTTTTTGGACACAGAAATGGTACGAGGAGTATTTGAAGCTGAAAGAAGAAGTGGATGGTCTGCAGCATTCACAGAGGTGGCGCAACCCTCCTCCTCCGCCGTGTCAAGCTGTTCTTCATTCTTATTTAATTATTTAATTTTTTTTATTTTTATTTTAAAAAAACCCTTTTTTATCTTAATTAATTATTATTTTTGTGTTATGTAGACGAATTCTTGGAGAAGAATTGGAAGATTTGGAGACGAAGGAATTGGACCAACTCGAAATTCAATTGGAAACGTCTCTGAAGCAAATCAGGTTCACTAAGGTAAAATTAATGCTCGAGTTCAACGAGCGGAGGTAG

mRNA sequence

ATGGGAAGAGGTAAGGTGGAGCTGAAGAAGATAGAGAACAAAATAAACCGACAGGTAACCTTCACTAAACGAAGAAATGGCCTTCTTAAAAAGGCTTATGAGCTCTCCATTTTGTGTGATGCTGAGGTGGCACTCATCGTCTTCTCCACCGGTGGCAAGCTCTATGAATTCTCCAGCTCTTCCAGGCATGTCTCGATTCGAATCTCTAACCTTTTTTGCTCGGAGCGTTCGTGTAGCTCCGTGCTTGATTTGATCTGTTTATGTCGAACTCGAGACGGGTTCTTTTCGTTAACCAATTGCAGTATAGCCAAGACGTTGGAGAGGTATCAAAGACATAGCTATGGAGCTTTGGCAGCCTCCCATCATCTCAAGGACACCGAGAAATGGTACGAGGAGTATTTGAAGCTGAAAGAAGAAGTGGATGGTCTGCAGCATTCACAGAGACGAATTCTTGGAGAAGAATTGGAAGATTTGGAGACGAAGGAATTGGACCAACTCGAAATTCAATTGGAAACGTCTCTGAAGCAAATCAGGTTCACTAAGGTAAAATTAATGCTCGAGTTCAACGAGCGGAGGTAG

Coding sequence (CDS)

ATGGGAAGAGGTAAGGTGGAGCTGAAGAAGATAGAGAACAAAATAAACCGACAGGTAACCTTCACTAAACGAAGAAATGGCCTTCTTAAAAAGGCTTATGAGCTCTCCATTTTGTGTGATGCTGAGGTGGCACTCATCGTCTTCTCCACCGGTGGCAAGCTCTATGAATTCTCCAGCTCTTCCAGGCATGTCTCGATTCGAATCTCTAACCTTTTTTGCTCGGAGCGTTCGTGTAGCTCCGTGCTTGATTTGATCTGTTTATGTCGAACTCGAGACGGGTTCTTTTCGTTAACCAATTGCAGTATAGCCAAGACGTTGGAGAGGTATCAAAGACATAGCTATGGAGCTTTGGCAGCCTCCCATCATCTCAAGGACACCGAGAAATGGTACGAGGAGTATTTGAAGCTGAAAGAAGAAGTGGATGGTCTGCAGCATTCACAGAGACGAATTCTTGGAGAAGAATTGGAAGATTTGGAGACGAAGGAATTGGACCAACTCGAAATTCAATTGGAAACGTCTCTGAAGCAAATCAGGTTCACTAAGGTAAAATTAATGCTCGAGTTCAACGAGCGGAGGTAG

Protein sequence

MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSSSRHVSIRISNLFCSERSCSSVLDLICLCRTRDGFFSLTNCSIAKTLERYQRHSYGALAASHHLKDTEKWYEEYLKLKEEVDGLQHSQRRILGEELEDLETKELDQLEIQLETSLKQIRFTKVKLMLEFNERR

Homology

[Close]

BLAST of Carg20580-RA vs. NCBI nr
Match: XP_022951685.1 (truncated transcription factor CAULIFLOWER A [Cucurbita moschata])

HSP 1 Score: 250.0 bits (637), Expect = 6.6e-63
Identity = 141/181 (77.90%), Postives = 142/181 (78.45%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS
Sbjct: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60

Query: 61  SRHVSIRISNLFCSERSCSSVLDLICLCRTRDGFFSLTNCSIAKTLERYQRHSYGALAAS 120
           S                                       SIAKTLERYQRHSYGALAAS
Sbjct: 61  S---------------------------------------SIAKTLERYQRHSYGALAAS 120

Query: 121 HHLKDTEKWYEEYLKLKEEVDGLQHSQRRILGEELEDLETKELDQLEIQLETSLKQIRFT 180
           HHLKDTEKWYEEYLKLKEEV+GLQHSQRRILGEELEDLETKELDQLEIQLETSLKQIRFT
Sbjct: 121 HHLKDTEKWYEEYLKLKEEVEGLQHSQRRILGEELEDLETKELDQLEIQLETSLKQIRFT 142

Query: 181 K 182
           K
Sbjct: 181 K 142

[Close]

BLAST of Carg20580-RA vs. NCBI nr
Match: XP_023538103.1 (truncated transcription factor CAULIFLOWER A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 246.5 bits (628), Expect = 7.3e-62
Identity = 139/181 (76.80%), Postives = 141/181 (77.90%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS
Sbjct: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60

Query: 61  SRHVSIRISNLFCSERSCSSVLDLICLCRTRDGFFSLTNCSIAKTLERYQRHSYGALAAS 120
           S                                       SIAKTLERYQRHSYGALAAS
Sbjct: 61  S---------------------------------------SIAKTLERYQRHSYGALAAS 120

Query: 121 HHLKDTEKWYEEYLKLKEEVDGLQHSQRRILGEELEDLETKELDQLEIQLETSLKQIRFT 180
           HHLKDTEKWYEEYLKLK+EV+GLQHSQRRILGEELEDLET ELDQLEIQLETSLKQIRFT
Sbjct: 121 HHLKDTEKWYEEYLKLKKEVEGLQHSQRRILGEELEDLETNELDQLEIQLETSLKQIRFT 142

Query: 181 K 182
           K
Sbjct: 181 K 142

[Close]

BLAST of Carg20580-RA vs. NCBI nr
Match: XP_023002153.1 (truncated transcription factor CAULIFLOWER A [Cucurbita maxima])

HSP 1 Score: 243.4 bits (620), Expect = 6.2e-61
Identity = 139/187 (74.33%), Postives = 143/187 (76.47%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS
Sbjct: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60

Query: 61  SRHVSIRISNLFCSERSCSSVLDLICLCRTRDGFFSLTNCSIAKTLERYQRHSYGALAAS 120
           S                                       SIAKTLERYQRHSYGALAAS
Sbjct: 61  S---------------------------------------SIAKTLERYQRHSYGALAAS 120

Query: 121 HHLKDTEKWYEEYLKLKEEVDGLQHSQRRILGEELEDLETKELDQLEIQLETSLKQIRFT 180
           HHLKDTEKWYEEYLKLK EV+GLQHSQR+ILGEELEDLETKELDQLEIQLE SLKQIRFT
Sbjct: 121 HHLKDTEKWYEEYLKLKAEVEGLQHSQRQILGEELEDLETKELDQLEIQLEMSLKQIRFT 148

Query: 181 KVKLMLE 188
           K + + E
Sbjct: 181 KNQSVYE 148

[Close]

BLAST of Carg20580-RA vs. NCBI nr
Match: XP_022131973.1 (truncated transcription factor CAULIFLOWER A [Momordica charantia])

HSP 1 Score: 221.9 bits (564), Expect = 1.9e-54
Identity = 126/187 (67.38%), Postives = 135/187 (72.19%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRG+VELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALI+FST GKLYEFSSS
Sbjct: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSS 60

Query: 61  SRHVSIRISNLFCSERSCSSVLDLICLCRTRDGFFSLTNCSIAKTLERYQRHSYGALAAS 120
           S                                       SIAKTLERYQRHSYGAL  S
Sbjct: 61  S---------------------------------------SIAKTLERYQRHSYGALEPS 120

Query: 121 HHLKDTEKWYEEYLKLKEEVDGLQHSQRRILGEELEDLETKELDQLEIQLETSLKQIRFT 180
           HH KDT++WY+EYLKLK EV+ LQHSQRR LGEEL+DLETKELDQLEIQLE SLKQIR  
Sbjct: 121 HHPKDTQRWYQEYLKLKAEVESLQHSQRRFLGEELDDLETKELDQLEIQLEMSLKQIRSA 148

Query: 181 KVKLMLE 188
           K + M +
Sbjct: 181 KSQTMFD 148

[Close]

BLAST of Carg20580-RA vs. NCBI nr
Match: XP_016899976.1 (PREDICTED: MADS-box protein CMB1 [Cucumis melo])

HSP 1 Score: 198.4 bits (503), Expect = 2.3e-47
Identity = 113/169 (66.86%), Postives = 121/169 (71.60%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRG+VELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFS  GKLYEFSSS
Sbjct: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSARGKLYEFSSS 60

Query: 61  SRHVSIRISNLFCSERSCSSVLDLICLCRTRDGFFSLTNCSIAKTLERYQRHSYGALAAS 120
           S                                       SI KTLERY+RHSYGAL AS
Sbjct: 61  S---------------------------------------SIGKTLERYERHSYGALEAS 120

Query: 121 HHLKDTEKWYEEYLKLKEEVDGLQHSQRRILGEELEDLETKELDQLEIQ 170
           H  KDTE+WY+EYLKLK EV+ LQ+SQRR LGEEL+DLE+KELDQLEIQ
Sbjct: 121 HPPKDTERWYQEYLKLKAEVEALQYSQRRFLGEELDDLESKELDQLEIQ 130

[Close]

BLAST of Carg20580-RA vs. TAIR10
Match: AT2G03710.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 162.9 bits (411), Expect = 1.9e-40
Identity = 91/187 (48.66%), Postives = 119/187 (63.64%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRGKVELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAE+AL++FS  GKLYEF SS
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  SRHVSIRISNLFCSERSCSSVLDLICLCRTRDGFFSLTNCSIAKTLERYQRHSYGALAAS 120
                                                    +A+T+++Y++HSY  +  +
Sbjct: 61  P--------------------------------------SGMARTVDKYRKHSYATMDPN 120

Query: 121 HHLKDTEKWYEEYLKLKEEVDGLQHSQRRILGEELEDLETKELDQLEIQLETSLKQIRFT 180
              KD +  Y++YLKLK  V+ LQHSQR +LGEEL +++  EL+ LE Q++ SL+QIR T
Sbjct: 121 QSAKDLQDKYQDYLKLKSRVEILQHSQRHLLGEELSEMDVNELEHLERQVDASLRQIRST 149

Query: 181 KVKLMLE 188
           K + ML+
Sbjct: 181 KARSMLD 149

[Close]

BLAST of Carg20580-RA vs. TAIR10
Match: AT5G15800.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 158.3 bits (399), Expect = 4.7e-39
Identity = 96/188 (51.06%), Postives = 118/188 (62.77%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRG+VELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAEVALI+FS  GKLYEF SS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SRHVSIRISNLFCSERSCSSVLDLICLCRTRDGFFSLTNCSIAKTLERYQRHSYGALAAS 120
           S                                       ++ KTL+RYQ+ SYG++  +
Sbjct: 61  S---------------------------------------NMLKTLDRYQKCSYGSIEVN 120

Query: 121 HH-LKDTEKWYEEYLKLKEEVDGLQHSQRRILGEELEDLETKELDQLEIQLETSLKQIRF 180
           +   K+ E  Y EYLKLK   + LQ  QR +LGE+L  L +KEL+QLE QL+ SLKQ+R 
Sbjct: 121 NKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRS 149

Query: 181 TKVKLMLE 188
            K + ML+
Sbjct: 181 IKTQYMLD 149

[Close]

BLAST of Carg20580-RA vs. TAIR10
Match: AT3G02310.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 157.5 bits (397), Expect = 8.1e-39
Identity = 96/188 (51.06%), Postives = 118/188 (62.77%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRG+VELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAEV+LIVFS  GKLYEF S+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCST 60

Query: 61  SRHVSIRISNLFCSERSCSSVLDLICLCRTRDGFFSLTNCSIAKTLERYQRHSYGALAAS 120
           S                                       ++ KTLERYQ+ SYG++  +
Sbjct: 61  S---------------------------------------NMLKTLERYQKCSYGSIEVN 120

Query: 121 HH-LKDTEKWYEEYLKLKEEVDGLQHSQRRILGEELEDLETKELDQLEIQLETSLKQIRF 180
           +   K+ E  Y EYLKLK   + LQ  QR +LGE+L  L +KEL+QLE QL+ SLKQ+R 
Sbjct: 121 NKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRC 149

Query: 181 TKVKLMLE 188
            K + ML+
Sbjct: 181 IKTQYMLD 149

[Close]

BLAST of Carg20580-RA vs. TAIR10
Match: AT1G24260.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 154.1 bits (388), Expect = 8.9e-38
Identity = 97/191 (50.79%), Postives = 117/191 (61.26%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRG+VELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAEVALI+FS  GKLYEF SS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SRHVSIRISNLFCSERSCSSVLDLICLCRTRDGFFSLTNCSIAKTLERYQRHSYGA---- 120
           S                                       S+ +TLERYQ+ +YGA    
Sbjct: 61  S---------------------------------------SMLRTLERYQKCNYGAPEPN 120

Query: 121 LAASHHLKDTEKWYEEYLKLKEEVDGLQHSQRRILGEELEDLETKELDQLEIQLETSLKQ 180
           + +   L       +EYLKLKE  D LQ +QR +LGE+L  L TKEL+ LE QL++SLKQ
Sbjct: 121 VPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELESLERQLDSSLKQ 152

Query: 181 IRFTKVKLMLE 188
           IR  + + ML+
Sbjct: 181 IRALRTQFMLD 152

[Close]

BLAST of Carg20580-RA vs. TAIR10
Match: AT1G26310.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-33
Identity = 90/190 (47.37%), Postives = 112/190 (58.95%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRG+VELK+IENKINRQVTF+KRR GLLKKA E+S+LCDAEV+LIVFS  GKL+E+SS 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSE 60

Query: 61  SRHVSIRISNLFCSERSCSSVLDLICLCRTRDGFFSLTNCSIAKTLERYQRHSYG---AL 120
           S           C E                            K LERY+R+SY     +
Sbjct: 61  S-----------CME----------------------------KVLERYERYSYAERQLI 120

Query: 121 AASHHLKDTEKWYEEYLKLKEEVDGLQHSQRRILGEELEDLETKELDQLEIQLETSLKQI 180
           A   H+     W  EY +LK +++ L+ +QR  LGEELE +  K+L  LE QLET+LK I
Sbjct: 121 APDSHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEELEPMSLKDLQNLEQQLETALKHI 151

Query: 181 RFTKVKLMLE 188
           R  K +LM E
Sbjct: 181 RSRKNQLMNE 151

[Close]

BLAST of Carg20580-RA vs. Swiss-Prot
Match: sp|Q39685|CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus OX=3570 GN=CMB1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 9.7e-42
Identity = 104/187 (55.61%), Postives = 121/187 (64.71%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRG+VELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAEVALIVFS  GKLYEF S+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCST 60

Query: 61  SRHVSIRISNLFCSERSCSSVLDLICLCRTRDGFFSLTNCSIAKTLERYQRHSYGALAAS 120
           S                                        + KTLERYQR SYG+L  S
Sbjct: 61  S---------------------------------------CMNKTLERYQRCSYGSLETS 120

Query: 121 HHLKDTEKWYEEYLKLKEEVDGLQHSQRRILGEELEDLETKELDQLEIQLETSLKQIRFT 180
              K+TE  Y+EYLKLK +VD LQ S R +LGE+L +L TKEL+QLE QL+ SL+QIR  
Sbjct: 121 QPSKETESSYQEYLKLKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSI 148

Query: 181 KVKLMLE 188
           K + ML+
Sbjct: 181 KTQHMLD 148

[Close]

BLAST of Carg20580-RA vs. Swiss-Prot
Match: sp|Q7Y040|EJ2_SOLLC (MADS-box protein EJ2 OS=Solanum lycopersicum OX=4081 GN=EJ2 PE=1 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 4.1e-40
Identity = 99/187 (52.94%), Postives = 119/187 (63.64%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRG+VELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAEVALI+FS  GKLYEF S+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query: 61  SRHVSIRISNLFCSERSCSSVLDLICLCRTRDGFFSLTNCSIAKTLERYQRHSYGALAAS 120
           S                                       S+ KT+E+YQR SY  L A+
Sbjct: 61  S---------------------------------------SMVKTIEKYQRCSYATLEAN 120

Query: 121 HHLKDTEKWYEEYLKLKEEVDGLQHSQRRILGEELEDLETKELDQLEIQLETSLKQIRFT 180
             + DT+  Y EYL+LK  V+ LQ SQR  LGE+L  L +K+L+QLE QLE+SLKQIR  
Sbjct: 121 QSVTDTQNNYHEYLRLKARVELLQRSQRNFLGEDLGTLSSKDLEQLENQLESSLKQIRSR 148

Query: 181 KVKLMLE 188
           K + ML+
Sbjct: 181 KTQFMLD 148

[Close]

BLAST of Carg20580-RA vs. Swiss-Prot
Match: sp|P29383|AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana OX=3702 GN=AGL3 PE=1 SV=2)

HSP 1 Score: 162.9 bits (411), Expect = 3.5e-39
Identity = 91/187 (48.66%), Postives = 119/187 (63.64%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRGKVELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAE+AL++FS  GKLYEF SS
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  SRHVSIRISNLFCSERSCSSVLDLICLCRTRDGFFSLTNCSIAKTLERYQRHSYGALAAS 120
                                                    +A+T+++Y++HSY  +  +
Sbjct: 61  P--------------------------------------SGMARTVDKYRKHSYATMDPN 120

Query: 121 HHLKDTEKWYEEYLKLKEEVDGLQHSQRRILGEELEDLETKELDQLEIQLETSLKQIRFT 180
              KD +  Y++YLKLK  V+ LQHSQR +LGEEL +++  EL+ LE Q++ SL+QIR T
Sbjct: 121 QSAKDLQDKYQDYLKLKSRVEILQHSQRHLLGEELSEMDVNELEHLERQVDASLRQIRST 149

Query: 181 KVKLMLE 188
           K + ML+
Sbjct: 181 KARSMLD 149

[Close]

BLAST of Carg20580-RA vs. Swiss-Prot
Match: sp|K4BND8|MADS4_SOLLC (MADS-box protein 04g005320 OS=Solanum lycopersicum OX=4081 GN=Solyc04g005320 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.3e-38
Identity = 98/187 (52.41%), Postives = 118/187 (63.10%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRGKVELK+IENKINRQVTF KRRNGLLKKAYELSILC+AEVALI+FS  GKLYEF S+
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSILCEAEVALIIFSNRGKLYEFCST 60

Query: 61  SRHVSIRISNLFCSERSCSSVLDLICLCRTRDGFFSLTNCSIAKTLERYQRHSYGALAAS 120
           S                                       S++ TLERY R SYG L   
Sbjct: 61  S---------------------------------------SMSDTLERYHRCSYGDLETG 120

Query: 121 HHLKDTEKWYEEYLKLKEEVDGLQHSQRRILGEELEDLETKELDQLEIQLETSLKQIRFT 180
              KD++  Y+EY+KLK  V+ LQ SQR ILGE+L  L TK+L+QLE QL++SL+ IR  
Sbjct: 121 QSSKDSQNNYQEYMKLKARVEVLQQSQRHILGEDLGQLNTKDLEQLERQLDSSLRLIRSR 148

Query: 181 KVKLMLE 188
           + + ML+
Sbjct: 181 RTQNMLD 148

[Close]

BLAST of Carg20580-RA vs. Swiss-Prot
Match: sp|K4DEK0|J2_SOLLC (MADS-box protein J2 OS=Solanum lycopersicum OX=4081 GN=J2 PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 8.5e-38
Identity = 97/187 (51.87%), Postives = 119/187 (63.64%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRG+VELK+IENKINRQVTF KRRNGLLKKAYELSILCDAEVALI+FS+ GKLYEFSS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSSRGKLYEFSSA 60

Query: 61  SRHVSIRISNLFCSERSCSSVLDLICLCRTRDGFFSLTNCSIAKTLERYQRHSYGALAAS 120
           S                                       S+  TLE+YQ+ SY +L   
Sbjct: 61  S---------------------------------------SMMTTLEKYQQCSYASLDPM 120

Query: 121 HHLKDTEKWYEEYLKLKEEVDGLQHSQRRILGEELEDLETKELDQLEIQLETSLKQIRFT 180
             + DT+  Y EY++LK  V+ LQ SQR ILGE+L  L +KEL+QLE QL+ SLK++R  
Sbjct: 121 LPVSDTQMNYNEYVRLKARVELLQRSQRHILGEDLGTLNSKELEQLEHQLDASLKKVRSK 148

Query: 181 KVKLMLE 188
           K + ML+
Sbjct: 181 KTQSMLD 148

[Close]

BLAST of Carg20580-RA vs. TrEMBL
Match: tr|A0A1S4DVG4|A0A1S4DVG4_CUCME (MADS-box protein CMB1 OS=Cucumis melo OX=3656 GN=LOC103488456 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.5e-47
Identity = 113/169 (66.86%), Postives = 121/169 (71.60%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRG+VELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFS  GKLYEFSSS
Sbjct: 1   MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSARGKLYEFSSS 60

Query: 61  SRHVSIRISNLFCSERSCSSVLDLICLCRTRDGFFSLTNCSIAKTLERYQRHSYGALAAS 120
           S                                       SI KTLERY+RHSYGAL AS
Sbjct: 61  S---------------------------------------SIGKTLERYERHSYGALEAS 120

Query: 121 HHLKDTEKWYEEYLKLKEEVDGLQHSQRRILGEELEDLETKELDQLEIQ 170
           H  KDTE+WY+EYLKLK EV+ LQ+SQRR LGEEL+DLE+KELDQLEIQ
Sbjct: 121 HPPKDTERWYQEYLKLKAEVEALQYSQRRFLGEELDDLESKELDQLEIQ 130

[Close]

BLAST of Carg20580-RA vs. TrEMBL
Match: tr|A0A1U8A7P2|A0A1U8A7P2_NELNU (developmental protein SEPALLATA 1 OS=Nelumbo nucifera OX=4432 GN=SEP1 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.9e-42
Identity = 109/187 (58.29%), Postives = 124/187 (66.31%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRG+VELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAEVALI+FS  GKLYEF SS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SRHVSIRISNLFCSERSCSSVLDLICLCRTRDGFFSLTNCSIAKTLERYQRHSYGALAAS 120
           S                                       S+ KTLERYQ+ SYGAL AS
Sbjct: 61  S---------------------------------------SMLKTLERYQKCSYGALEAS 120

Query: 121 HHLKDTEKWYEEYLKLKEEVDGLQHSQRRILGEELEDLETKELDQLEIQLETSLKQIRFT 180
              K+T+  Y+EYLKLK  V+ LQ SQR +LGE+L  L TKEL+QLE QLE SLKQIR T
Sbjct: 121 QPAKETQSSYQEYLKLKARVEVLQRSQRNLLGEDLGPLSTKELEQLEHQLEMSLKQIRST 148

Query: 181 KVKLMLE 188
           K +LML+
Sbjct: 181 KTQLMLD 148

[Close]

BLAST of Carg20580-RA vs. TrEMBL
Match: tr|A0A0X8DAP5|A0A0X8DAP5_PLAAC (SEPALLATA-like protein OS=Platanus acerifolia OX=140101 GN=SEP1.1 PE=2 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 5.5e-42
Identity = 109/187 (58.29%), Postives = 123/187 (65.78%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRG+VELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAEVALI+FS  GKLYEF SS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SRHVSIRISNLFCSERSCSSVLDLICLCRTRDGFFSLTNCSIAKTLERYQRHSYGALAAS 120
           S                                       S+ KTLERYQR SYG L AS
Sbjct: 61  S--------------------------------------SSMLKTLERYQRCSYGTLEAS 120

Query: 121 HHLKDTEKWYEEYLKLKEEVDGLQHSQRRILGEELEDLETKELDQLEIQLETSLKQIRFT 180
              K+T+  Y+EYLKLK  V+ LQ SQR +LGE+L  L TKEL+QLE QLE SLKQIR T
Sbjct: 121 QPPKETQSSYQEYLKLKARVELLQRSQRNLLGEDLGSLNTKELEQLEHQLEMSLKQIRST 149

Query: 181 KVKLMLE 188
           K +LML+
Sbjct: 181 KTQLMLD 149

[Close]

BLAST of Carg20580-RA vs. TrEMBL
Match: tr|A0A1U8A1G6|A0A1U8A1G6_NELNU (MADS-box protein CMB1 isoform X1 OS=Nelumbo nucifera OX=4432 GN=LOC104599803 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.6e-41
Identity = 107/187 (57.22%), Postives = 123/187 (65.78%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRG+VELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAEVALI+FS  GKLYEF SS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SRHVSIRISNLFCSERSCSSVLDLICLCRTRDGFFSLTNCSIAKTLERYQRHSYGALAAS 120
           S                                       S+ KTL+RYQ+ SYGAL  S
Sbjct: 61  S---------------------------------------SMLKTLDRYQKCSYGALETS 120

Query: 121 HHLKDTEKWYEEYLKLKEEVDGLQHSQRRILGEELEDLETKELDQLEIQLETSLKQIRFT 180
              K+T+  Y+EYLKLK  V+ LQ SQR +LGE+L  L TKEL+QLE QLE SLKQIR T
Sbjct: 121 QPAKETQSSYQEYLKLKARVEVLQRSQRNLLGEDLGPLTTKELEQLEHQLEMSLKQIRST 148

Query: 181 KVKLMLE 188
           K +LML+
Sbjct: 181 KTQLMLD 148

[Close]

BLAST of Carg20580-RA vs. TrEMBL
Match: tr|D7SMN8|D7SMN8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0083g01050 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.7e-41
Identity = 105/187 (56.15%), Postives = 122/187 (65.24%), Query Frame = 0


Query: 1   MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSS 60
           MGRG+VELK+IENKINRQVTF KRRNGLLKKAYELS+LCDAEVALI+FST GKLYEF SS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSS 60

Query: 61  SRHVSIRISNLFCSERSCSSVLDLICLCRTRDGFFSLTNCSIAKTLERYQRHSYGALAAS 120
           S                                       S+ KTLERYQ+ SYGA+  S
Sbjct: 61  S---------------------------------------SMLKTLERYQKCSYGAVEVS 120

Query: 121 HHLKDTEKWYEEYLKLKEEVDGLQHSQRRILGEELEDLETKELDQLEIQLETSLKQIRFT 180
              K+ E  Y EYLKLK + + LQ +QR +LGE+L  L TKEL+QLE QLETSLKQ+R T
Sbjct: 121 RPSKELESSYREYLKLKSKFESLQRTQRNLLGEDLGPLNTKELEQLERQLETSLKQVRST 148

Query: 181 KVKLMLE 188
           K + ML+
Sbjct: 181 KTQFMLD 148

The following BLAST results are available for this feature:

BLAST of Carg20580-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951685.1	6.6e-63	77.90	truncated transcription factor CAULIFLOWER A [Cucurbita moschata]	[more]
XP_023538103.1	7.3e-62	76.80	truncated transcription factor CAULIFLOWER A [Cucurbita pepo subsp. pepo]	[more]
XP_023002153.1	6.2e-61	74.33	truncated transcription factor CAULIFLOWER A [Cucurbita maxima]	[more]
XP_022131973.1	1.9e-54	67.38	truncated transcription factor CAULIFLOWER A [Momordica charantia]	[more]
XP_016899976.1	2.3e-47	66.86	PREDICTED: MADS-box protein CMB1 [Cucumis melo]	[more]

BLAST of Carg20580-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G03710.1	1.9e-40	48.66	K-box region and MADS-box transcription factor family protein	[more]
AT5G15800.2	4.7e-39	51.06	K-box region and MADS-box transcription factor family protein	[more]
AT3G02310.1	8.1e-39	51.06	K-box region and MADS-box transcription factor family protein	[more]
AT1G24260.2	8.9e-38	50.79	K-box region and MADS-box transcription factor family protein	[more]
AT1G26310.1	1.3e-33	47.37	K-box region and MADS-box transcription factor family protein	[more]

BLAST of Carg20580-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q39685\|CMB1_DIACA	9.7e-42	55.61	MADS-box protein CMB1 OS=Dianthus caryophyllus OX=3570 GN=CMB1 PE=2 SV=1	[more]
sp\|Q7Y040\|EJ2_SOLLC	4.1e-40	52.94	MADS-box protein EJ2 OS=Solanum lycopersicum OX=4081 GN=EJ2 PE=1 SV=1	[more]
sp\|P29383\|AGL3_ARATH	3.5e-39	48.66	Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana OX=3702 GN=AGL3 PE=1 ...	[more]
sp\|K4BND8\|MADS4_SOLLC	1.3e-38	52.41	MADS-box protein 04g005320 OS=Solanum lycopersicum OX=4081 GN=Solyc04g005320 PE=...	[more]
sp\|K4DEK0\|J2_SOLLC	8.5e-38	51.87	MADS-box protein J2 OS=Solanum lycopersicum OX=4081 GN=J2 PE=1 SV=1	[more]

BLAST of Carg20580-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DVG4\|A0A1S4DVG4_CUCME	1.5e-47	66.86	MADS-box protein CMB1 OS=Cucumis melo OX=3656 GN=LOC103488456 PE=4 SV=1	[more]
tr\|A0A1U8A7P2\|A0A1U8A7P2_NELNU	1.9e-42	58.29	developmental protein SEPALLATA 1 OS=Nelumbo nucifera OX=4432 GN=SEP1 PE=4 SV=1	[more]
tr\|A0A0X8DAP5\|A0A0X8DAP5_PLAAC	5.5e-42	58.29	SEPALLATA-like protein OS=Platanus acerifolia OX=140101 GN=SEP1.1 PE=2 SV=1	[more]
tr\|A0A1U8A1G6\|A0A1U8A1G6_NELNU	1.6e-41	57.22	MADS-box protein CMB1 isoform X1 OS=Nelumbo nucifera OX=4432 GN=LOC104599803 PE=...	[more]
tr\|D7SMN8\|D7SMN8_VITVI	2.7e-41	56.15	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0083g01050 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0046983	protein dimerization activity
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0045944	positive regulation of transcription from RNA polymerase II promoter
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR033896	MADS_MEF2-like
IPR002487	TF_Kbox
IPR036879	TF_MADSbox_sf
IPR002100	TF_MADSbox

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription from RNA polymerase II promoter
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg20580	Carg20580	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg20580-RA	Carg20580-RA-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg20580-RA.CDS.3	Carg20580-RA.CDS.3	CDS
Carg20580-RA.CDS.2	Carg20580-RA.CDS.2	CDS
Carg20580-RA.CDS.1	Carg20580-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg20580-RA.exon.3	Carg20580-RA.exon.3	exon
Carg20580-RA.exon.2	Carg20580-RA.exon.2	exon
Carg20580-RA.exon.1	Carg20580-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 23..38 score: 81.18 coord: 38..59 score: 65.37 coord: 3..23 score: 67.09
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 1.0E-40 score: 151.3
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..57 e-value: 1.2E-26 score: 91.8
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 3..57
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..61 score: 33.207
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	G3DSA:3.40.1810.10		coord: 13..71 e-value: 5.0E-26 score: 92.1
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	SSF55455	SRF-like	coord: 2..63
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 124..187 e-value: 1.6E-17 score: 63.3
IPR002487	Transcription factor, K-box	PROSITE	PS51297	K_BOX	coord: 126..192 score: 11.82
None	No IPR available	PANTHER	PTHR11945:SF352	AGAMOUS-LIKE MADS-BOX PROTEIN AGL3	coord: 98..187 coord: 1..61
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 1..61
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 98..187
IPR033896	MADS MEF2-like	CDD	cd00265	MADS_MEF2_like	coord: 2..61 e-value: 7.65488E-37 score: 123.817