Carg19754-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19754-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DUF241 domain protein
Location	Cucurbita_argyrosperma_scaffold_143 : 117227 .. 118978 (-)
Sequence length	768

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGCTCCTCCAACTGTCACGCCCGTTCCAACAGCCTTCCGACACGGCCGCACCCACTTGTCACAGAGTGCGACGAGCACCTCTGTCGGCTGAAGGCGCTAGACTCCGCCCCATGGACAGCGCCAGCCATGGTCAAGAAGCTCGCCGGGCTGCAAGACTTGCAAGAGTGCGTCAACAAGCTGCTGCTGCTACGCCGAACCATGGAGGCCTTTGCAGCACAGCGCCGGGAGAAATGGGTCGATGAGATCTTTGATGGCTCGCTAAGGCTGCTTGATTTGTGTAGCGCTGCTAAGGATGGCGTTATTCATACTAAAGAGTGCGTTAGGGAGCTGCAGTCCTTGGTTAGGAGAAGATCTTCCTTTTCTGGGTGCTGTGGGAATGGCGTTGCCAATCAGGTTTGTTTTGCTATCTATTTTTCGTGAGAAACCACTCACTCCCACAATTGTATGATATTCTCTACTTTGAGCATCAGTTCGGGTGACTTTGTACTTATAAATCCATGATCATTCTTTTAATTAGCCACATCGGACTCCCTCCCAACAATCCAACATTTTCTACCGATAAATTTTGTCACGTCGGCTAATTTAGAGAATGAGAATGATCATGGGTTTATAAATAAAGAATACTCTTTCTATTGGTCTGAAGCCTTCCGGGGAAGCCCAAAACAAAGTCACGACAGCTTATGCTCAAAGTAGACAATATCATACCATTGTCGAGAGTTTGTGTTCTGTCTAACTGATTTAAAGATTCAAACTTTTTCTTAAAAATGTGAAAAAGGTGAAAAATTATCATACTATTGTGGAAAGTCGTAATTATCATACCATTGTAGAAAGTCGTAATATCCTACCATTGTGGACCTACCATTCTGGAAAGTCGTGTTCGTCTAAAAAATTTAAAGATTCAAACTTTTCCTTAAAAAAGTGAAAAATTATCATACTATTGCGAAGAGTCGATCTAACACATTTAAGATTCAAACTTTTCCTTAAAAAAGTGAAAAATTATTGAAAACATGTCTGTAATCCGGACTCTCCACAATGGTATGATATTGTCCATTTTGAGTATAAGTTCTCGTGGCTTTGTTTTTTGTTTCCCTAAAAAATCTCGTACCGATGGAATTGTACTATTTACTTATAAACCCATGATCATTTTCTAAATTAGCCTGTGTGGGATTTCTTTTCGACAATCTCGATAAAACAAACATAATTGATTGATTTTTATTCAAATCTTTTGATTCACAGGTGGAGAAATATTTAGTCTCAAGAAAAGTAGTGATCAGAGCAATTCAAAAGTCTTTAGCTAGCATCAAGACATACGGAACAAAACCAAGCTCGGTTTCCATTAAAGACACTGAAACGATGGCCTTAATCGCTCTATTATTCGACGTAGAAGCTACAAGTGTGAACGTTGTCGAAGCCCTCATGTGCTATGTTTTGGGGAAGAAAGGGAAGGCGAAGGGTAACGGTTGGGCGCTCGTTTCAAAATTGATGCGTTCGAAAAAAGGGCCGTTGAGAGAAGGGGTTGAAGAAGGAGAAGAGAACGAGTTCGCGACCGTGGATGCAGCGGTTGACATGGTGGCGAGTAGATTACCGTTTGATAACGTCGTGGCCGTGCGCGATGGCATCGAGAGTATGGGGGATCAGCTAGGGAAGTTGGAGGCATGTGTTCAAGATTTGGAAGGAGGGTTGGAGGGTTTGTTTAGGAGATTGATAAGAAATAGGGTTTTACTTTTGAATATTATCAATAACTAG

mRNA sequence

ATGGGAGGCTCCTCCAACTGTCACGCCCGTTCCAACAGCCTTCCGACACGGCCGCACCCACTTGTCACAGAGTGCGACGAGCACCTCTGTCGGCTGAAGGCGCTAGACTCCGCCCCATGGACAGCGCCAGCCATGGTCAAGAAGCTCGCCGGGCTGCAAGACTTGCAAGAGTGCGTCAACAAGCTGCTGCTGCTACGCCGAACCATGGAGGCCTTTGCAGCACAGCGCCGGGAGAAATGGGTCGATGAGATCTTTGATGGCTCGCTAAGGCTGCTTGATTTGTGTAGCGCTGCTAAGGATGGCGTTATTCATACTAAAGACATCAAGACATACGGAACAAAACCAAGCTCGGTTTCCATTAAAGACACTGAAACGATGGCCTTAATCGCTCTATTATTCGACGTAGAAGCTACAAGTGTGAACGTTGTCGAAGCCCTCATGTGCTATGTTTTGGGGAAGAAAGGGAAGGCGAAGGGTAACGGTTGGGCGCTCGTTTCAAAATTGATGCGTTCGAAAAAAGGGCCGTTGAGAGAAGGGGTTGAAGAAGGAGAAGAGAACGAGTTCGCGACCGTGGATGCAGCGGTTGACATGGTGGCGAGTAGATTACCGTTTGATAACGTCGTGGCCGTGCGCGATGGCATCGAGAGTATGGGGGATCAGCTAGGGAAGTTGGAGGCATGTGTTCAAGATTTGGAAGGAGGGTTGGAGGGTTTGTTTAGGAGATTGATAAGAAATAGGGTTTTACTTTTGAATATTATCAATAACTAG

Coding sequence (CDS)

ATGGGAGGCTCCTCCAACTGTCACGCCCGTTCCAACAGCCTTCCGACACGGCCGCACCCACTTGTCACAGAGTGCGACGAGCACCTCTGTCGGCTGAAGGCGCTAGACTCCGCCCCATGGACAGCGCCAGCCATGGTCAAGAAGCTCGCCGGGCTGCAAGACTTGCAAGAGTGCGTCAACAAGCTGCTGCTGCTACGCCGAACCATGGAGGCCTTTGCAGCACAGCGCCGGGAGAAATGGGTCGATGAGATCTTTGATGGCTCGCTAAGGCTGCTTGATTTGTGTAGCGCTGCTAAGGATGGCGTTATTCATACTAAAGACATCAAGACATACGGAACAAAACCAAGCTCGGTTTCCATTAAAGACACTGAAACGATGGCCTTAATCGCTCTATTATTCGACGTAGAAGCTACAAGTGTGAACGTTGTCGAAGCCCTCATGTGCTATGTTTTGGGGAAGAAAGGGAAGGCGAAGGGTAACGGTTGGGCGCTCGTTTCAAAATTGATGCGTTCGAAAAAAGGGCCGTTGAGAGAAGGGGTTGAAGAAGGAGAAGAGAACGAGTTCGCGACCGTGGATGCAGCGGTTGACATGGTGGCGAGTAGATTACCGTTTGATAACGTCGTGGCCGTGCGCGATGGCATCGAGAGTATGGGGGATCAGCTAGGGAAGTTGGAGGCATGTGTTCAAGATTTGGAAGGAGGGTTGGAGGGTTTGTTTAGGAGATTGATAAGAAATAGGGTTTTACTTTTGAATATTATCAATAACTAG

Protein sequence

MGGSSNCHARSNSLPTRPHPLVTECDEHLCRLKALDSAPWTAPAMVKKLAGLQDLQECVNKLLLLRRTMEAFAAQRREKWVDEIFDGSLRLLDLCSAAKDGVIHTKDIKTYGTKPSSVSIKDTETMALIALLFDVEATSVNVVEALMCYVLGKKGKAKGNGWALVSKLMRSKKGPLREGVEEGEENEFATVDAAVDMVASRLPFDNVVAVRDGIESMGDQLGKLEACVQDLEGGLEGLFRRLIRNRVLLLNIINN

Homology

[Close]

BLAST of Carg19754-RA vs. NCBI nr
Match: XP_022947701.1 (uncharacterized protein LOC111451487 [Cucurbita moschata])

HSP 1 Score: 475.3 bits (1222), Expect = 1.3e-130
Identity = 251/302 (83.11%), Postives = 255/302 (84.44%), Query Frame = 0


Query: 1   MGGSSNCHARSNSLPTRPHPLVTECDEHLCRLKALDSAPWTAPAMVKKLAGLQDLQECVN 60
           MGGSSNCHARSNSLPTRPHPLVTECDEHLCRLKALDSAPWTAPAMVKKLAGLQDLQECVN
Sbjct: 1   MGGSSNCHARSNSLPTRPHPLVTECDEHLCRLKALDSAPWTAPAMVKKLAGLQDLQECVN 60

Query: 61  KLLLLRRTMEAFAAQRREKWVDEIFDGSLRLLDLCSAAKDGVIHTKD------------- 120
           KLLLLRRTMEAFAAQRREKWVDEIFDGSLRLLDLCSAAKDGVIHTK+             
Sbjct: 61  KLLLLRRTMEAFAAQRREKWVDEIFDGSLRLLDLCSAAKDGVIHTKECVRELQSLVRRRS 120

Query: 121 ----------------------------------IKTYGTKPSSVSIKDTETMALIALLF 180
                                             IKTYGTKPSSV++KDTETMALIALLF
Sbjct: 121 SFSGCCGNGVAKQVEKYLVSRKVVIRAIQKSLASIKTYGTKPSSVAVKDTETMALIALLF 180

Query: 181 DVEATSVNVVEALMCYVLGKKGKAKGNGWALVSKLMRSKKGPLREGVEEGEENEFATVDA 240
           DVEATSVNVVEALMCYVLGKKGKAKGNGWALVSKLMRSKKGPLREGV+EGEENEFATVDA
Sbjct: 181 DVEATSVNVVEALMCYVLGKKGKAKGNGWALVSKLMRSKKGPLREGVKEGEENEFATVDA 240

Query: 241 AVDMVASRLPFDNVVAVRDGIESMGDQLGKLEACVQDLEGGLEGLFRRLIRNRVLLLNII 256
           AVDMVASRLPFDNVVAVRDGIESMGDQLGKLEACVQDLEGGLEGLFRRLIRNRVLLLNII
Sbjct: 241 AVDMVASRLPFDNVVAVRDGIESMGDQLGKLEACVQDLEGGLEGLFRRLIRNRVLLLNII 300

[Close]

BLAST of Carg19754-RA vs. NCBI nr
Match: XP_022971057.1 (uncharacterized protein LOC111469842 [Cucurbita maxima])

HSP 1 Score: 466.1 bits (1198), Expect = 7.8e-128
Identity = 247/302 (81.79%), Postives = 251/302 (83.11%), Query Frame = 0


Query: 1   MGGSSNCHARSNSLPTRPHPLVTECDEHLCRLKALDSAPWTAPAMVKKLAGLQDLQECVN 60
           MGG SNCHARSNSLPTRPHPLVTECDEHLCRLKALDSAPWTAPAMVKKLAGLQDLQECVN
Sbjct: 1   MGGFSNCHARSNSLPTRPHPLVTECDEHLCRLKALDSAPWTAPAMVKKLAGLQDLQECVN 60

Query: 61  KLLLLRRTMEAFAAQRREKWVDEIFDGSLRLLDLCSAAKDGVIHTKD------------- 120
           KLLLLRRTMEAFAAQ REKWVDEIFDGSLRLLDLCSAAKDGVIHTK+             
Sbjct: 61  KLLLLRRTMEAFAAQLREKWVDEIFDGSLRLLDLCSAAKDGVIHTKECVRELQSLVRRRS 120

Query: 121 ----------------------------------IKTYGTKPSSVSIKDTETMALIALLF 180
                                             IKTYGTK SS+SIKDTETMALIALLF
Sbjct: 121 SFSGSCGNGVANQVEKYLVSRKVVIRAIQKALASIKTYGTKSSSISIKDTETMALIALLF 180

Query: 181 DVEATSVNVVEALMCYVLGKKGKAKGNGWALVSKLMRSKKGPLREGVEEGEENEFATVDA 240
           DVEATSVNVVEALMCYVLGKKGKAKGNGWALVSKLMRSKKGPLREGVEEGEENEFATVDA
Sbjct: 181 DVEATSVNVVEALMCYVLGKKGKAKGNGWALVSKLMRSKKGPLREGVEEGEENEFATVDA 240

Query: 241 AVDMVASRLPFDNVVAVRDGIESMGDQLGKLEACVQDLEGGLEGLFRRLIRNRVLLLNII 256
           AVDMVASRLPFDNVV VR+G+ESMGDQLGKLEACVQDLEGGLEGLFRRLIRNRVLLLNII
Sbjct: 241 AVDMVASRLPFDNVVTVRNGVESMGDQLGKLEACVQDLEGGLEGLFRRLIRNRVLLLNII 300

[Close]

BLAST of Carg19754-RA vs. NCBI nr
Match: XP_023533168.1 (uncharacterized protein LOC111795141 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 465.7 bits (1197), Expect = 1.0e-127
Identity = 248/302 (82.12%), Postives = 251/302 (83.11%), Query Frame = 0


Query: 1   MGGSSNCHARSNSLPTRPHPLVTECDEHLCRLKALDSAPWTAPAMVKKLAGLQDLQECVN 60
           MGGSSNCHARSNSLPTRPHPLVTECDEHLCRLKALDSAPWTAPAMVKKLAGLQDLQECVN
Sbjct: 1   MGGSSNCHARSNSLPTRPHPLVTECDEHLCRLKALDSAPWTAPAMVKKLAGLQDLQECVN 60

Query: 61  KLLLLRRTMEAFAAQRREKWVDEIFDGSLRLLDLCSAAKDGVIHTKD------------- 120
           KLLLLRRTM+AFAAQRREKWVDEIFDGSLRLLDLCSAAKDGVIHTK+             
Sbjct: 61  KLLLLRRTMDAFAAQRREKWVDEIFDGSLRLLDLCSAAKDGVIHTKECVRELQSLVRRRS 120

Query: 121 ----------------------------------IKTYGTKPSSVSIKDTETMALIALLF 180
                                             IKTYGTK SS+SIKDTETMALIALLF
Sbjct: 121 SFSGSCGNAVANQVEKYLISRKVVIRAIQKSLASIKTYGTKSSSISIKDTETMALIALLF 180

Query: 181 DVEATSVNVVEALMCYVLGKKGKAKGNGWALVSKLMRSKKGPLREGVEEGEENEFATVDA 240
           DVEATSVNVVEALMCYVLGKKGKAK NGWALVSKLMRSKKG LREGVEEGEENEFATVDA
Sbjct: 181 DVEATSVNVVEALMCYVLGKKGKAKSNGWALVSKLMRSKKGSLREGVEEGEENEFATVDA 240

Query: 241 AVDMVASRLPFDNVVAVRDGIESMGDQLGKLEACVQDLEGGLEGLFRRLIRNRVLLLNII 256
           AVDMVASRLPFDNVVAVRDGIESMGDQLGKLEACVQDLEGGLEGLFRRLI NRVLLLNII
Sbjct: 241 AVDMVASRLPFDNVVAVRDGIESMGDQLGKLEACVQDLEGGLEGLFRRLIGNRVLLLNII 300

[Close]

BLAST of Carg19754-RA vs. NCBI nr
Match: XP_023512245.1 (uncharacterized protein LOC111777032 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 404.4 bits (1038), Expect = 2.8e-109
Identity = 216/295 (73.22%), Postives = 226/295 (76.61%), Query Frame = 0


Query: 1   MGGSSNCHARSNSLPTRPHPLVTECDEHLCRLKALDSAPWTAPAMVKKLAGLQDLQECVN 60
           MGGSSN HARSNSLPTRPHPLVTECDEHLCRLKALDSAPWTAP M KKLAGLQDLQECVN
Sbjct: 1   MGGSSNYHARSNSLPTRPHPLVTECDEHLCRLKALDSAPWTAPGMAKKLAGLQDLQECVN 60

Query: 61  KLLLLRRTMEAFAAQRREKWVDEIFDGSLRLLDLCSAAKDGVIHTKD------------- 120
           KLLLLRRT EAF  QRREKWVDE+FDGSLRLLDLCSAAKDGVIHTK+             
Sbjct: 61  KLLLLRRTREAFGTQRREKWVDEVFDGSLRLLDLCSAAKDGVIHTKECVRELQSLVRRRS 120

Query: 121 ---------------------------IKTYGTKPSSVSIKDTETMALIALLFDVEATSV 180
                                      +KTYGTKPSS+SIKD ETMALI LLFDVEA SV
Sbjct: 121 SSWSCGNEKYLASRKVVKRAIQKALTSLKTYGTKPSSISIKDIETMALIGLLFDVEAASV 180

Query: 181 NVVEALMCYVLGKKGKAKGNGWALVSKLMRSKKGPLREGVEEGEENEFATVDAAVDMVAS 240
           NV EALM YVLGKKGK +G+GWALVSKLMRSK+  L E   EGE NEFATVDAAVDMVAS
Sbjct: 181 NVFEALMSYVLGKKGKTRGSGWALVSKLMRSKRAILTEEAAEGEANEFATVDAAVDMVAS 240

Query: 241 RLPFDNVVAVRDGIESMGDQLGKLEACVQDLEGGLEGLFRRLIRNRVLLLNIINN 256
           +L  D+      GIESMGDQLGKLE CVQDLEGGL+GLFRRLIRNRV LLNIINN
Sbjct: 241 KLNSDSPTTGNGGIESMGDQLGKLEVCVQDLEGGLDGLFRRLIRNRVSLLNIINN 295

[Close]

BLAST of Carg19754-RA vs. NCBI nr
Match: XP_022943514.1 (uncharacterized protein LOC111448264 [Cucurbita moschata])

HSP 1 Score: 401.4 bits (1030), Expect = 2.3e-108
Identity = 215/301 (71.43%), Postives = 227/301 (75.42%), Query Frame = 0


Query: 1   MGGSSNCHARSNSLPTRPHPLVTECDEHLCRLKALDSAPWTAPAMVKKLAGLQDLQECVN 60
           MGGSSN HARSNSLPTRPHPLVTECDEHLCRLKALDSAPWTAP M KKLAGLQDLQECVN
Sbjct: 1   MGGSSNYHARSNSLPTRPHPLVTECDEHLCRLKALDSAPWTAPGMAKKLAGLQDLQECVN 60

Query: 61  KLLLLRRTMEAFAAQRREKWVDEIFDGSLRLLDLCSAAKDGVIHTKD------------- 120
           KLLLLRRT EAFA QRREKWVDE+FDGSLRLLDLCSAAKDGVIHTK+             
Sbjct: 61  KLLLLRRTREAFATQRREKWVDEVFDGSLRLLDLCSAAKDGVIHTKECVRELQSLVRRRS 120

Query: 121 ---------------------------------IKTYGTKPSSVSIKDTETMALIALLFD 180
                                            +KTYGTKPSS+SIKD ETMALI LLFD
Sbjct: 121 SSWACGNGVVNQVEKYLASRKVVKRAIQKALTSLKTYGTKPSSISIKDIETMALIGLLFD 180

Query: 181 VEATSVNVVEALMCYVLGKKGKAKGNGWALVSKLMRSKKGPLREGVEEGEENEFATVDAA 240
           VEA SVNV EALM YVLGKKGK +G+GWALVSKLMRSK+  L E   EGE NEFAT+DAA
Sbjct: 181 VEAASVNVFEALMSYVLGKKGKTRGSGWALVSKLMRSKRAILTEEATEGEANEFATIDAA 240

Query: 241 VDMVASRLPFDNVVAVRDGIESMGDQLGKLEACVQDLEGGLEGLFRRLIRNRVLLLNIIN 256
           VD +AS+L  DN +    GIESMGDQLGKLE CVQDLEGGL+GLFRRLIRNRV LLNIIN
Sbjct: 241 VDTMASKLNSDNSMTGNVGIESMGDQLGKLEVCVQDLEGGLDGLFRRLIRNRVSLLNIIN 300

[Close]

BLAST of Carg19754-RA vs. TAIR10
Match: AT2G17080.1 (Arabidopsis protein of unknown function (DUF241))

HSP 1 Score: 118.6 bits (296), Expect = 5.5e-27
Identity = 88/281 (31.32%), Postives = 140/281 (49.82%), Query Frame = 0


Query: 8   HARSNSLPTRPHPLVTECDEHLCRLKALDSAPWTAPAMV-KKLAGLQDLQECVNKLLLLR 67
           H RSNS P+R HP     DE L RL++ + A       + ++L  LQ+L E ++KL+   
Sbjct: 6   HVRSNSFPSRSHPQAAHVDEQLARLRSSEQASXXXXXXICQRLDNLQELHESLDKLISRP 65

Query: 68  RTMEAFAAQRREKWVDEIFDGSLRLLDLCSAAKDGVIHTK-------------------D 127
            T +A + +  +K V+++ DGSLR+LDLC+ +KD +   K                   +
Sbjct: 66  VTQQALSQEHNKKAVEQLLDGSLRILDLCNISKDALSEMKEGLMEIQSILRRKRGDLSEE 125

Query: 128 IKTYGTKPSSV---------SIKDTETM----ALIALLFDVEATSVNVVEALMCYVLGKK 187
           +K Y T   S+         S+K T+        +A+  + EA ++++ ++L+ Y+ G K
Sbjct: 126 VKKYLTSRKSLKKSFQKVQKSLKVTQAEDNNDDTLAVFGEAEAITLSLFDSLLSYMSGSK 185

Query: 188 GKAKGNGWALVSKLMRSKKGPLREGVEEGEENEFATVDAAVDMVASRLPFDNVVAVRDGI 247
             +K   W++VSKLM  KK        E +ENEF  VD       S    +  + +    
Sbjct: 186 TCSK---WSVVSKLMNKKKVTC-----EAQENEFTKVD-------SEFQSEKTLKM---- 245

Query: 248 ESMGDQLGKLEACVQDLEGGLEGLFRRLIRNRVLLLNIINN 256
               D +  LE+C+QDLE GLE L + LI+ RV  LNI+ +
Sbjct: 246 ----DDVQNLESCIQDLEDGLESLSKSLIKYRVSFLNILGH 263

[Close]

BLAST of Carg19754-RA vs. TAIR10
Match: AT2G17070.1 (Arabidopsis protein of unknown function (DUF241))

HSP 1 Score: 107.8 bits (268), Expect = 9.7e-24
Identity = 81/278 (29.14%), Postives = 135/278 (48.56%), Query Frame = 0


Query: 8   HARSNSLPTRPHPLVTECDEHLCRLKALDSAPWTAPAMV-KKLAGLQDLQECVNKLLLLR 67
           H RS+S P+ PHP     DE L RL++ +    ++ + + ++L  LQ+L E ++KL+ L 
Sbjct: 6   HVRSHSYPSIPHPQAAHVDEQLARLRSSEETSTSSSSSICQRLDNLQELHESLDKLIRLP 65

Query: 68  RTMEAFAAQRREKWVDEIFDGSLRLLDLCSAAKDGVIHTK-------------------D 127
            T +A   ++ +K V+++ DGSL++LD+C+ +KD +   K                   +
Sbjct: 66  VTQQALGQEKNKKDVEQLLDGSLKILDVCNISKDALSQMKEGLMEIQSILRRKRGDLSGE 125

Query: 128 IKTYGTKPSS--------------VSIKDTETMALIALLFDVEATSVNVVEALMCYVLGK 187
           +K Y     S                 +D +  +L A+  + EA ++ + ++L  Y+ G 
Sbjct: 126 VKKYLASRKSFKKTFQKVQKSLKAAQAEDNKDKSL-AVFGEAEAVTIAMFDSLFSYMSGS 185

Query: 188 KGKAKGNGWALVSKLMRSKKGPLREGVEEGEENEFATVDAAVDMVASRLPFDNVVAVRDG 247
           K  +K   W++VSKLM  KK        E +ENEF  VD       S    +  + + D 
Sbjct: 186 KTCSK---WSVVSKLMNKKKITC-----EAQENEFTKVD-------SEFQSEKTLKMED- 245

Query: 248 IESMGDQLGKLEACVQDLEGGLEGLFRRLIRNRVLLLN 252
                  +  LE+C+QD E GLE L + LI+ RV +LN
Sbjct: 246 -------VQILESCIQDFEDGLESLSKSLIKYRVSILN 259

[Close]

BLAST of Carg19754-RA vs. TAIR10
Match: AT4G35200.1 (Arabidopsis protein of unknown function (DUF241))

HSP 1 Score: 106.3 bits (264), Expect = 2.8e-23
Identity = 86/277 (31.05%), Postives = 129/277 (46.57%), Query Frame = 0


Query: 8   HARSNSLPTRPHPLVTECDEHLCRLKALDSAPWTAPAMVKKLAGLQDLQECVNKLLLLRR 67
           H RSNS P+R HP     DE L RL++ DSA  ++ ++ ++L+ LQDL + + K++ L  
Sbjct: 6   HVRSNSYPSRQHPQAAHVDEQLTRLRSSDSA--SSSSICQRLSNLQDLHDSLEKMIRLSV 65

Query: 68  TMEAFAAQRREKWVDEIFDGSLRLLDLCSAAKDGVIHTK-------------------DI 127
           T  A +  + EK    + DGSLR+LDLC+ AKD +   K                   ++
Sbjct: 66  TNLALSQDQIEK----LLDGSLRILDLCNIAKDAISQMKEGLMEIQSILRRKPGDLSGEV 125

Query: 128 KTY-------------GTKPSSVSIKDTETMALIALLFDVEATSVNVVEALMCYVLGKKG 187
           K Y               K   V      T A + +    EA ++ + E+L  ++ G K 
Sbjct: 126 KKYLVSRKFLKKSLQKVIKSLKVCQSKDSTNASLVVFGRAEAVTMALFESLFSFMSGSKA 185

Query: 188 KAKGNGWALVSKLMRSKKGPLREGVEEGEENEFATVDAAVDMVASRLPFDNVVAVRDGIE 247
             K   W+LVSK+M   K        E E NEF  +D       S    +  + + D   
Sbjct: 186 CGK---WSLVSKMMSQNKVTC-----EAEANEFTRID-------SEFQSEKSLQMED--- 245

Query: 248 SMGDQLGKLEACVQDLEGGLEGLFRRLIRNRVLLLNI 253
                +  LE+C+QDLE G+E L + LI+ RV +LNI
Sbjct: 246 -----VQNLESCIQDLEDGIESLSKSLIKYRVSILNI 253

[Close]

BLAST of Carg19754-RA vs. TAIR10
Match: AT4G35210.1 (Arabidopsis protein of unknown function (DUF241))

HSP 1 Score: 101.7 bits (252), Expect = 7.0e-22
Identity = 81/274 (29.56%), Postives = 133/274 (48.54%), Query Frame = 0


Query: 8   HARSNSLPTRPHPLVTECDEHLCRLKALDSAPWTAPAMVKKLAGLQDLQECVNKLLLLRR 67
           H RS+S P+R HP     DE L RL++  +A  ++ ++ ++L+ LQDL + + K++ L  
Sbjct: 6   HVRSSSYPSRQHPQAAHVDEQLTRLRSSGTA--SSSSICQRLSNLQDLHDSLEKMIRLSV 65

Query: 68  TMEAFAAQRREKWVDEIFDGSLRLLDLCSAAKDGVIHTK-------------------DI 127
           T +A +  + EK    + DGS+++LDLCS +KDG+   K                   ++
Sbjct: 66  TNQALSQDQIEK----LLDGSIKILDLCSISKDGLSQMKESLKEIQSIVRRKRGDLSAEV 125

Query: 128 KTYGT------KPSSVSIKDTETMA----LIALLFDVEATSVNVVEALMCYVLGKKGKAK 187
           K Y        K     +K  +T       +A+  + E  ++ + E+L  ++ G K   K
Sbjct: 126 KKYLASRKFLKKSFEKVLKSLKTSQNKNDALAVFGEAETVTIALFESLFSFMSGSKACGK 185

Query: 188 GNGWALVSKLMRSKKGPLREGVEEGEENEFATVDAAVDMVASRLPFDNVVAVRDGIESMG 247
              W+LVSK+M   KG       E E NEF  VD         + F +  +++       
Sbjct: 186 ---WSLVSKMMSQSKGTC-----EAEANEFTRVD---------MEFQSEKSLQ------M 245

Query: 248 DQLGKLEACVQDLEGGLEGLFRRLIRNRVLLLNI 253
           + +  LE C+QDLE G+  L + LI+ RV +LNI
Sbjct: 246 EDVQNLEICIQDLEDGIGSLSKSLIKYRVSILNI 250

[Close]

BLAST of Carg19754-RA vs. TAIR10
Match: AT4G35710.1 (Arabidopsis protein of unknown function (DUF241))

HSP 1 Score: 75.9 bits (185), Expect = 4.1e-14
Identity = 70/295 (23.73%), Postives = 135/295 (45.76%), Query Frame = 0


Query: 10  RSNSLPTRPHPLVTECDEHLCRLKALDSAPWTAPAMVKKLAGLQDLQECVNKLLLLRRTM 69
           RS SLP+R  P  +  +E L ++K +++   ++ +++  LAGL++L   + + L +    
Sbjct: 11  RSISLPSRSQPSTSGLEESLNKIKTINTTTGSSESILMGLAGLEELYIFLEEFLKMGSKQ 70

Query: 70  EAFAAQRREKWVDEIFDGSLRLLDLCSAAKDGVI----HTKDIKTY-------------- 129
              ++   E +++E+ DGSLRL+D+CS ++D ++    H + +++Y              
Sbjct: 71  RVMSSGGSE-FMEEMLDGSLRLMDICSVSRDLMVETHEHVRGVQSYVRRKKVSGGGGGDK 130

Query: 130 -------------------------------GTKPSSVSIKDTETMALIALLFDVEATSV 189
                                          GT+      +D + +A+I  +  V + SV
Sbjct: 131 IDVAVSDYVGFRKNMRKEAKKLLGSLKKVDGGTRSCDNDHEDEQLVAVIDRVRRVVSVSV 190

Query: 190 NVVEALMCYVLGKKGKAKGNGWALVSKLMRSKKGPLREGVEEGEENEFATVDAAVDMVAS 249
            V+++ +  +  +K   K    A V K+ +    P +        N   T+D+A+     
Sbjct: 191 VVLKSFLELLSRRKSNIKSK-LASVLKMKKDNHAPAK--------NVLETLDSAI----- 250

Query: 250 RLPFDNVVAVRDGIESMGDQLGKLEACVQDLEGGLEGLFRRLIRNRVLLLNIINN 256
              F + ++  D    + ++L ++E C+   E  LEGLFRRLIR R  +LNII++
Sbjct: 251 ---FGDFLSHDD----LQNELEEVEMCIGGFERNLEGLFRRLIRTRASILNIISH 283

[Close]

BLAST of Carg19754-RA vs. TrEMBL
Match: tr|A0A1S3BIU6|A0A1S3BIU6_CUCME (uncharacterized protein LOC103490547 OS=Cucumis melo OX=3656 GN=LOC103490547 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 1.7e-107
Identity = 214/301 (71.10%), Postives = 228/301 (75.75%), Query Frame = 0


Query: 1   MGGSSNCHARSNSLPTRPHPLVTECDEHLCRLKALDSAPWTAPAMVKKLAGLQDLQECVN 60
           MGGSSN HARSNSLPTRPHPLVTECDEHLCRLKA+DSAPWTA  M  KLAGLQDLQECVN
Sbjct: 1   MGGSSNYHARSNSLPTRPHPLVTECDEHLCRLKAMDSAPWTASGMANKLAGLQDLQECVN 60

Query: 61  KLLLLRRTMEAFAAQRREKWVDEIFDGSLRLLDLCSAAKDGVIHTKD------------- 120
           KLLLLRRT +AFAAQRREKWVDE+FDGSLRLLDLCSA+KDGVIHTK+             
Sbjct: 61  KLLLLRRTRDAFAAQRREKWVDEVFDGSLRLLDLCSASKDGVIHTKECVRELQSLVRRRS 120

Query: 121 ---------------------------------IKTYGTKPSSVSIKDTETMALIALLFD 180
                                            +KTYG KPSS+SIKDTET+ALI LLFD
Sbjct: 121 SSWCCGNGVANQVEKYLASRKVVKRAIQKALASVKTYGAKPSSISIKDTETIALITLLFD 180

Query: 181 VEATSVNVVEALMCYVLGKKGKAKGNGWALVSKLMRSKKGPLREGVEEGEENEFATVDAA 240
           VE  SVNV EAL+ YVLGKKGKAKG+GWALVSKLMRSK+  L E   EGE NEFATVDAA
Sbjct: 181 VEVASVNVFEALLSYVLGKKGKAKGSGWALVSKLMRSKRVLLTEDGAEGEANEFATVDAA 240

Query: 241 VDMVASRLPFDNVVAVRDGIESMGDQLGKLEACVQDLEGGLEGLFRRLIRNRVLLLNIIN 256
           VD+VASRL  D+ +    GIESMGDQLGKLEACVQDLEGGLEGLFRRLIRNRV LLNIIN
Sbjct: 241 VDVVASRLASDSTIIGGGGIESMGDQLGKLEACVQDLEGGLEGLFRRLIRNRVSLLNIIN 300

[Close]

BLAST of Carg19754-RA vs. TrEMBL
Match: tr|A0A0A0KG43|A0A0A0KG43_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G127330 PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 8.0e-105
Identity = 211/302 (69.87%), Postives = 227/302 (75.17%), Query Frame = 0


Query: 1   MGGSSNCHARSNSLPTRPHPLVTECDEHLCRLKALDSAPWTAPAMVKKLAGLQDLQECVN 60
           MGGSSN HARSNSLPTRPHPLVTECDEHLCRLKA+DSAPWTA  M  KLAGLQDLQECVN
Sbjct: 1   MGGSSNYHARSNSLPTRPHPLVTECDEHLCRLKAMDSAPWTAFGMANKLAGLQDLQECVN 60

Query: 61  KLLLLRRTMEAFAAQRREKWVDEIFDGSLRLLDLCSAAKDGVIHTKD------------- 120
           KLLLLRRT +AFAA RREKWVDE+FDGSLRLLDLCSA+KDGVIHTK+             
Sbjct: 61  KLLLLRRTRDAFAAHRREKWVDEVFDGSLRLLDLCSASKDGVIHTKECVRELQSLVRRRS 120

Query: 121 ---------------------------------IKTYGTKPSSVSIKDTETMALIALLFD 180
                                            +KTYG +PSS+SIKDTET+ALI LLFD
Sbjct: 121 SSWCCGNGVANQVEKYLASRKVVKRAIQKALASVKTYGARPSSISIKDTETIALITLLFD 180

Query: 181 VEATSVNVVEALMCYVLGKKGKAKGNGWALVSKLMRSKKGPLREGVEEGEENEFATVDAA 240
           VE  SVNV EAL+ YVLGKKGKAKG+GWALVSKLMRSK+  L E   EGE NEFAT+DAA
Sbjct: 181 VEVASVNVFEALLSYVLGKKGKAKGSGWALVSKLMRSKRVLLTEDGAEGEANEFATIDAA 240

Query: 241 VDMVASRLPFDNVVAV-RDGIESMGDQLGKLEACVQDLEGGLEGLFRRLIRNRVLLLNII 256
           VD+VASRL  D+   +   GIESMGDQLGKLEACVQDLEGGLEGLFRRLIRNRV LLNII
Sbjct: 241 VDVVASRLASDSSTIIGGGGIESMGDQLGKLEACVQDLEGGLEGLFRRLIRNRVSLLNII 300

[Close]

BLAST of Carg19754-RA vs. TrEMBL
Match: tr|W9RKX3|W9RKX3_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_014372 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 2.0e-47
Identity = 125/301 (41.53%), Postives = 168/301 (55.81%), Query Frame = 0


Query: 5   SNCHARSNSLPTRPHPLVTECDEHLCRLKALDSAPWTAPAMVKKLAGLQDLQECVNKLLL 64
           S  H RSNS PTRPHPL   CDEHLCRL A ++   ++ ++  KL+GL+DL +CV KL  
Sbjct: 6   SQYHVRSNSFPTRPHPLFQRCDEHLCRLGASEAT--SSSSLSHKLSGLEDLHDCVEKLFQ 65

Query: 65  LRRTMEAFAAQRREKWVDEIFDGSLRLLDLCSAAKDGVIHTKD----------------- 124
           L  T +AF   R EKWVDE  DGSLRLLD+CSAAKD V+HTK+                 
Sbjct: 66  LPLTQQAFVHSRHEKWVDEQVDGSLRLLDMCSAAKDAVLHTKECAREVQSIMRRRRGAEV 125

Query: 125 ------------------------------IKTYGTKPSSVSIKDTETMALIALLFDVEA 184
                                         +K+  + P++  +   ET AL+ +L +VE+
Sbjct: 126 GLAGEVTKYLASRKVVKKAIRKALENMKAAVKSSSSSPTNKDM-TVETAALVGVLREVES 185

Query: 185 TSVNVVEALMCYVLGKKGKAKGNGWALVSKLMRSKKG-PLREGVEEGEENEFATVDAAVD 244
            S+ V E+L+C++ G K + K +GW+LVSKLM +KK     +  +E + NEFA V+ A+ 
Sbjct: 186 VSLAVFESLLCFISGPKAQTKLSGWSLVSKLMNNKKKVGCDQEAQETDVNEFAKVEEAL- 245

Query: 245 MVASRLPFDNVVAVRDG--IESMGDQLGKLEACVQDLEGGLEGLFRRLIRNRVLLLNIIN 256
               RL   +   V +   IE+   +L  LE CVQD E  LE LFRRLI+NRV LLNI+N
Sbjct: 246 ---QRLMCHDTSKVENSLHIENAQTELQSLELCVQDFEERLERLFRRLIKNRVSLLNILN 299

[Close]

BLAST of Carg19754-RA vs. TrEMBL
Match: tr|B9RN27|B9RN27_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1342780 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 4.5e-47
Identity = 116/296 (39.19%), Postives = 168/296 (56.76%), Query Frame = 0


Query: 4   SSNCHARSNSLPTRPHPLVTECDEHLCRLKALDSAPWTAPAMVKKLAGLQDLQECVNKLL 63
           SS  HARS+SLP+RPHPL++E D+HLCRL+A ++   ++ ++  KL+GLQDL +CV+KLL
Sbjct: 3   SSLFHARSDSLPSRPHPLMSELDDHLCRLRACEATSTSSTSISHKLSGLQDLHDCVDKLL 62

Query: 64  LLRRTMEAFAAQRREKWVDEIFDGSLRLLDLCSAAKDGVIHTKD---------------- 123
           LL  T +A A Q+  KW+DE+ DGSLRLLD+C+AAKD ++ TK+                
Sbjct: 63  LLPLTQQALAQQQNRKWIDELLDGSLRLLDVCNAAKDALLQTKEYTLELQSTIRRRQGGC 122

Query: 124 ----------------------------IKTYGTKPSSVSIK-DTETMALIALLFDVEAT 183
                                       IK    K S  S++ D E    +++L +V+A 
Sbjct: 123 NGDLSNEVRKYITSRKMAKKAIQKAINNIKGLENKSSISSLEFDNEIATFVSVLREVQAV 182

Query: 184 SVNVVEALMCYVLGKKGKAKGNGWALVSKLMRSKKGPLREGVEEGEENEFATVDAAVDMV 243
           ++ V+++ M ++ G K   K + W LVSKLM  K+  +  G EE   NEF+  DAA++ +
Sbjct: 183 TLGVLKSFMSFISGTKSHPKPSSWTLVSKLMLHKR--IASGEEEAVANEFSMTDAALESL 242

Query: 244 ASRLPFDNVVAVRDGIESMGDQLGKLEACVQDLEGGLEGLFRRLIRNRVLLLNIIN 255
                +DN       +E++  QL  LE C+QDLE G   LFRR+I+ RV LLNI N
Sbjct: 243 MGCTKYDN-------MENVQSQLKNLEECIQDLEEGTHSLFRRMIKTRVSLLNIFN 289

[Close]

BLAST of Carg19754-RA vs. TrEMBL
Match: tr|A0A2P5CKJ1|A0A2P5CKJ1_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_281430 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.9e-46
Identity = 131/292 (44.86%), Postives = 168/292 (57.53%), Query Frame = 0


Query: 5   SNCHARSNSLPTRPHPLVTECDEHLCRL-KALDSAPWTAPAMVKKLAGLQDLQECVNKLL 64
           SN H RSNSLP++ HP+V EC++ L RL KA D    T+ ++ +KL GL+DL  CV KLL
Sbjct: 6   SNFHVRSNSLPSKSHPVVEECNDLLIRLGKASDP---TSSSIAQKLGGLEDLHLCVEKLL 65

Query: 65  LLRRTMEAFAAQRREKWVDEIFDGSLRLLDLCSAAKDGVIHTK----------------- 124
            L  T +AFA  R+EKWVDE+ DGSLRLLD+CS AKD V+HTK                 
Sbjct: 66  QLPLTQQAFAQGRQEKWVDELVDGSLRLLDVCSTAKDAVLHTKECAREIHSIMRRKISLE 125

Query: 125 -DIKTYG---------------------TKPS-SVSIKDTETMALIALLFDVEATSVNVV 184
            +IK Y                      +K S S S KD+E  AL++LL +VEA S++  
Sbjct: 126 SEIKKYSASRKVVKKAIQKALASLKGVESKTSFSPSTKDSEITALVSLLREVEAVSLSTF 185

Query: 185 EALMCYVLGKKGKAKGNGWALVSKLMRSKKGPLREGVEEGEENEFATVDAAVDMVASRLP 244
           E+L+C+V G K  +K  GW+LVSKLM+SK    R G +    NEFA VDAA+  + S   
Sbjct: 186 ESLLCFVSGPKTHSKIGGWSLVSKLMQSK----RVGCDVEVVNEFAKVDAALQCLMSNET 245

Query: 245 FDNVVAVRDGIESMGDQLGKLEACVQDLEGGLEGLFRRLIRNRVLLLNIINN 256
                A+         ++  LE CVQD E  LE LFRRLI+ RV LLNI+NN
Sbjct: 246 SKTEQAML--------EMQNLEMCVQDFEERLECLFRRLIKTRVSLLNILNN 282

The following BLAST results are available for this feature:

BLAST of Carg19754-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947701.1	1.3e-130	83.11	uncharacterized protein LOC111451487 [Cucurbita moschata]	[more]
XP_022971057.1	7.8e-128	81.79	uncharacterized protein LOC111469842 [Cucurbita maxima]	[more]
XP_023533168.1	1.0e-127	82.12	uncharacterized protein LOC111795141 [Cucurbita pepo subsp. pepo]	[more]
XP_023512245.1	2.8e-109	73.22	uncharacterized protein LOC111777032 [Cucurbita pepo subsp. pepo]	[more]
XP_022943514.1	2.3e-108	71.43	uncharacterized protein LOC111448264 [Cucurbita moschata]	[more]

BLAST of Carg19754-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G17080.1	5.5e-27	31.32	Arabidopsis protein of unknown function (DUF241)	[more]
AT2G17070.1	9.7e-24	29.14	Arabidopsis protein of unknown function (DUF241)	[more]
AT4G35200.1	2.8e-23	31.05	Arabidopsis protein of unknown function (DUF241)	[more]
AT4G35210.1	7.0e-22	29.56	Arabidopsis protein of unknown function (DUF241)	[more]
AT4G35710.1	4.1e-14	23.73	Arabidopsis protein of unknown function (DUF241)	[more]

BLAST of Carg19754-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19754-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BIU6\|A0A1S3BIU6_CUCME	1.7e-107	71.10	uncharacterized protein LOC103490547 OS=Cucumis melo OX=3656 GN=LOC103490547 PE=...	[more]
tr\|A0A0A0KG43\|A0A0A0KG43_CUCSA	8.0e-105	69.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G127330 PE=4 SV=1	[more]
tr\|W9RKX3\|W9RKX3_9ROSA	2.0e-47	41.53	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_014372 PE=4 SV=1	[more]
tr\|B9RN27\|B9RN27_RICCO	4.5e-47	39.19	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1342780 PE=4 SV=1	[more]
tr\|A0A2P5CKJ1\|A0A2P5CKJ1_9ROSA	2.9e-46	44.86	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_281430 PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004320	DUF241_pln

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg19754	Carg19754	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg19754-RA.CDS.2	Carg19754-RA.CDS.2	CDS
Carg19754-RA.CDS.1	Carg19754-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg19754-RA.exon.2	Carg19754-RA.exon.2	exon
Carg19754-RA.exon.1	Carg19754-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg19754-RA	Carg19754-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004320	Protein of unknown function DUF241, plant	PFAM	PF03087	DUF241	coord: 117..252 e-value: 3.1E-27 score: 95.8 coord: 48..107 e-value: 1.7E-15 score: 57.4
None	No IPR available	PANTHER	PTHR31509	FAMILY NOT NAMED	coord: 117..254
None	No IPR available	PANTHER	PTHR31509:SF43	SUBFAMILY NOT NAMED	coord: 5..107
None	No IPR available	PANTHER	PTHR31509:SF43	SUBFAMILY NOT NAMED	coord: 117..254
None	No IPR available	PANTHER	PTHR31509	FAMILY NOT NAMED	coord: 5..107