Carg19155-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTGAAGGCAGGTTTTGTTCTTCGGCGCCGGGATACTGCTTGCCAAAGGGAAGCCAAAGCCGACCAAGAATCATGTAAGCCAATGGCAGGCCATTTGGTTAAGGGCAAGAAACCTAACACCCCATGGAAGATTACTTGTACACTGATTTCAAGCGCGTCAAGGCACCACGGAAAACTTGGGTTTGTTTGGCCAATTTTCGACCGGCCATTTGGCCAATGATGTTGCCAATTTCTTGCAAGAATAATCTCTTTGAATAATATCCTCAAACAGGTACCCAAAATGTCTTTTTTTTGTGGTCGTTTTTATGAGCTCTGCTTCTGTTTTTTTTTGTTCATTTGCTCTGTTTTTTTTTTTTTTTATTTTTATTTGCTCGTTTTTTTGGTTAGGCTGTTTCTGGAGCGAAACGAGAAAGCCATAAAAAGAGCGTAAACAAGAAAAAACCGACGGATGAATATATTGGATAAAGTAAAGCAGCTGGGGAGAGGAGGATCAAACGGCGGTAACCTGCCATATTGGATCGACGGGCCACAAACCTATCGTTGCCAACGTCGGAGATTCAGAGCCGTTCTTTGCAAAAGACGGCGTCGCTGAGCCAGCTCTCGTTGACCACGATACCCAGTAAAGAAAAAAAGGGATATTGAAAGCCGTGGAGGCTTCCGTATCCAAATCTTCCAGGTTTCATTTCTTAAGATTCCCTTTTTGCCCTTCATTACGAATTTTTTTTTTATATTATTATTATAAATTATTAAACTTTACCGAGTTGTAGAGAGGTCCCAATTAAGTTGATGAGCTGTGGATGTTCCTGACTGTAATCAGGCGATGTGCCACGTGCTCTACGGACGGACATTGGACTGTTTGCGAGAGCATTTGGAGTGAATAAGAGCTTGAAACTCCACTCTACAGCTTCAGAACCTGACGTGAAGTCAAACGGTGGGATGAAATCTACAGAGTTCATGATTTTGGTAGCGGAATGGCAATTTTGGAAGGTCAGTCAATTTTTTTTAATTGAAAAATTTCTAATTTTCTTTTTTAAATTGAAAAAATATATTTAAAGTTAAAAAAAAAATAAAATAATTAACAGGTAATGACAAACAAAGAGGCGGTGGAATCCTAATTAGACACATAAAGGATGCGAGTGGCAGCCAAACGACTTATCGATGAAGGCTAGTATCCAGAACAAGCAAAGGACGGACATAATCGTGGCATTGGTTGTTAGGTTTCGGTGATACGGTATTATTTATATATATTTCTTTTAAAATTTTGGTAAACATAGTGTTTTATATATCAGTGTGTGGATAATTATAAGCCAGTAAATTTGTTTTGCCACCTGGCTGCTGGTCTGTGAGCTGTATGCGTAATGTTATCTATTTAGATAATTAAGAAATAAAATAT GTGAAGGCAGGTTTTGTTCTTCGGCGCCGGGATACTGCTTGCCAAAGGGAAGCCAAAGCCGACCAAGAATCATGTAAGCCAATGGCAGGCCATTTGGTTAAGGGCAAGAAACCTAACACCCCATGGAAGATTACTTGTACACTGATTTCAAGCGCGTCAAGGCACCACGGAAAACTTGGGCTGTTTCTGGAGCGAAACGAGAAAGCCATAAAAAGAGCCTGGGGAGAGGAGGATCAAACGGCGGTAACCTGCCATATTGGATCGACGGGCCACAAACCTATCGTTGCCAACGTCGGAGATTCAGAGCCGTTCTTTGCAAAAGACGGCGTCGCTGAGCCAGCTCTCGTTGACCACGATACCCAAGAGGTCCCAATTAAGTTGATGAGCTGTGGATGCGATGTGCCACGTGCTCTACGGACGGACATTGGACTGTTTGCGAGAGCATTTGGAGTGAATAAGAGCTTGAAACTCCACTCTACAGCTTCAGAACCTGACGTGAAGTCAAACGGTGGGATGAAATCTACAGAGTTCATGATTTTGGTAGCGGAATGGCAATTTTGGAAGGTAATGACAAACAAAGAGGCGGTGGAATCCTAATTAGACACATAAAGGATGCGAGTGGCAGCCAAACGACTTATCGATGAAGGCTAGTATCCAGAACAAGCAAAGGACGGACATAATCGTGGCATTGGTTGTTAGGTTTCGGTGATACGGTATTATTTATATATATTTCTTTTAAAATTTTGGTAAACATAGTGTTTTATATATCAGTGTGTGGATAATTATAAGCCAGTAAATTTGTTTTGCCACCTGGCTGCTGGTCTGTGAGCTGTATGCGTAATGTTATCTATTTAGATAATTAAGAAATAAAATAT GTGAAGGCAGGTTTTGTTCTTCGGCGCCGGGATACTGCTTGCCAAAGGGAAGCCAAAGCCGACCAAGAATCATGTAAGCCAATGGCAGGCCATTTGGTTAAGGGCAAGAAACCTAACACCCCATGGAAGATTACTTGTACACTGATTTCAAGCGCGTCAAGGCACCACGGAAAACTTGGGCTGTTTCTGGAGCGAAACGAGAAAGCCATAAAAAGAGCCTGGGGAGAGGAGGATCAAACGGCGGTAACCTGCCATATTGGATCGACGGGCCACAAACCTATCGTTGCCAACGTCGGAGATTCAGAGCCGTTCTTTGCAAAAGACGGCGTCGCTGAGCCAGCTCTCGTTGACCACGATACCCAAGAGGTCCCAATTAAGTTGATGAGCTGTGGATGCGATGTGCCACGTGCTCTACGGACGGACATTGGACTGTTTGCGAGAGCATTTGGAGTGAATAAGAGCTTGAAACTCCACTCTACAGCTTCAGAACCTGACGTGAAGTCAAACGGTGGGATGAAATCTACAGAGTTCATGATTTTGGTAGCGGAATGGCAATTTTGGAAGGTAATGACAAACAAAGAGGCGGTGGAATCCTAA VKAGFVLRRRDTACQREAKADQESCKPMAGHLVKGKKPNTPWKITCTLISSASRHHGKLGLFLERNEKAIKRAWGEEDQTAVTCHIGSTGHKPIVANVGDSEPFFAKDGVAEPALVDHDTQEVPIKLMSCGCDVPRALRTDIGLFARAFGVNKSLKLHSTASEPDVKSNGGMKSTEFMILVAEWQFWKVMTNKEAVES
BLAST of Carg19155-RA vs. NCBI nr
Match: XP_022930621.1 (probable protein phosphatase 2C 58 [Cucurbita moschata]) HSP 1 Score: 101.7 bits (252), Expect = 3.0e-18 Identity = 99/247 (40.08%), Postives = 116/247 (46.96%), Query Frame = 0
BLAST of Carg19155-RA vs. NCBI nr
Match: XP_022989283.1 (probable protein phosphatase 2C 58 [Cucurbita maxima]) HSP 1 Score: 100.9 bits (250), Expect = 5.1e-18 Identity = 98/247 (39.68%), Postives = 115/247 (46.56%), Query Frame = 0
BLAST of Carg19155-RA vs. NCBI nr
Match: XP_023531365.1 (probable protein phosphatase 2C 58 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 100.9 bits (250), Expect = 5.1e-18 Identity = 98/247 (39.68%), Postives = 116/247 (46.96%), Query Frame = 0
BLAST of Carg19155-RA vs. NCBI nr
Match: XP_022147850.1 (probable protein phosphatase 2C 58 [Momordica charantia]) HSP 1 Score: 97.1 bits (240), Expect = 7.4e-17 Identity = 94/249 (37.75%), Postives = 118/249 (47.39%), Query Frame = 0
BLAST of Carg19155-RA vs. NCBI nr
Match: XP_008455279.1 (PREDICTED: probable protein phosphatase 2C 58 [Cucumis melo]) HSP 1 Score: 85.1 bits (209), Expect = 2.9e-13 Identity = 70/163 (42.94%), Postives = 88/163 (53.99%), Query Frame = 0
BLAST of Carg19155-RA vs. TAIR10
Match: AT4G28400.1 (Protein phosphatase 2C family protein) HSP 1 Score: 70.1 bits (170), Expect = 1.7e-12 Identity = 58/132 (43.94%), Postives = 74/132 (56.06%), Query Frame = 0
BLAST of Carg19155-RA vs. TAIR10
Match: AT3G15260.1 (Protein phosphatase 2C family protein) HSP 1 Score: 69.7 bits (169), Expect = 2.3e-12 Identity = 62/159 (38.99%), Postives = 83/159 (52.20%), Query Frame = 0
BLAST of Carg19155-RA vs. TAIR10
Match: AT2G20630.2 (PP2C induced by AVRRPM1) HSP 1 Score: 68.2 bits (165), Expect = 6.6e-12 Identity = 55/131 (41.98%), Postives = 73/131 (55.73%), Query Frame = 0
BLAST of Carg19155-RA vs. TAIR10
Match: AT1G22280.3 (phytochrome-associated protein phosphatase type 2C) HSP 1 Score: 56.6 bits (135), Expect = 2.0e-08 Identity = 47/130 (36.15%), Postives = 68/130 (52.31%), Query Frame = 0
BLAST of Carg19155-RA vs. TAIR10
Match: AT1G43900.1 (Protein phosphatase 2C family protein) HSP 1 Score: 47.4 bits (111), Expect = 1.2e-05 Identity = 43/122 (35.25%), Postives = 64/122 (52.46%), Query Frame = 0
BLAST of Carg19155-RA vs. Swiss-Prot
Match: sp|Q93YW5|P2C58_ARATH (Probable protein phosphatase 2C 58 OS=Arabidopsis thaliana OX=3702 GN=At4g28400 PE=2 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 3.2e-11 Identity = 58/132 (43.94%), Postives = 74/132 (56.06%), Query Frame = 0
BLAST of Carg19155-RA vs. Swiss-Prot
Match: sp|Q9LDA7|P2C39_ARATH (Probable protein phosphatase 2C 39 OS=Arabidopsis thaliana OX=3702 GN=At3g15260 PE=2 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 4.1e-11 Identity = 62/159 (38.99%), Postives = 83/159 (52.20%), Query Frame = 0
BLAST of Carg19155-RA vs. Swiss-Prot
Match: sp|Q9SIU8|P2C20_ARATH (Probable protein phosphatase 2C 20 OS=Arabidopsis thaliana OX=3702 GN=PPC3-1.2 PE=1 SV=3) HSP 1 Score: 68.2 bits (165), Expect = 1.2e-10 Identity = 55/131 (41.98%), Postives = 73/131 (55.73%), Query Frame = 0
BLAST of Carg19155-RA vs. Swiss-Prot
Match: sp|Q9LME4|P2C09_ARATH (Probable protein phosphatase 2C 9 OS=Arabidopsis thaliana OX=3702 GN=At1g22280 PE=1 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 3.6e-07 Identity = 47/130 (36.15%), Postives = 68/130 (52.31%), Query Frame = 0
BLAST of Carg19155-RA vs. TrEMBL
Match: tr|A0A1S3C049|A0A1S3C049_CUCME (probable protein phosphatase 2C 58 OS=Cucumis melo OX=3656 GN=LOC103495482 PE=4 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 1.9e-13 Identity = 70/163 (42.94%), Postives = 88/163 (53.99%), Query Frame = 0
BLAST of Carg19155-RA vs. TrEMBL
Match: tr|A0A0A0K3U4|A0A0A0K3U4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G049260 PE=4 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 7.3e-13 Identity = 69/163 (42.33%), Postives = 87/163 (53.37%), Query Frame = 0
BLAST of Carg19155-RA vs. TrEMBL
Match: tr|V4TJ72|V4TJ72_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016165mg PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 1.8e-11 Identity = 66/158 (41.77%), Postives = 84/158 (53.16%), Query Frame = 0
BLAST of Carg19155-RA vs. TrEMBL
Match: tr|A0A067DGY9|A0A067DGY9_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g023327mg PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 1.8e-11 Identity = 66/158 (41.77%), Postives = 84/158 (53.16%), Query Frame = 0
BLAST of Carg19155-RA vs. TrEMBL
Match: tr|V4U3J9|V4U3J9_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016165mg PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 1.8e-11 Identity = 66/158 (41.77%), Postives = 84/158 (53.16%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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