Carg18972-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18972-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	NGR2
Location	Cucurbita_argyrosperma_scaffold_086 : 534389 .. 534888 (-)
Sequence length	390

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTACAAATCAACATGATGAAAGGATTCTGTACATTTAACATCACATTTTGACGTAACACTTGATACTTAGTTGCGTACAAATTGAATATGTTCCTTCTCCAACTTTGCAGAGCATAATAAACAAGAGTCTCGTGAAGAGTTCAGCGATTGGCCTCATGGATTGCTAGCAATTGGAACTTTTGGCAACAATGAGATTAAAGATGAACAAGACATACAAGAGGAGGAGGATCCATCTTCTTCAGAAGAGATAGTTGATATCTCTCCTGAAGAAGTTGGTAAATTACAGAAAGAGTTAACGAAGCTTTTATCTCGAAAACCGAACGCCGAAAAGCAGGTTGCAGATCTTCCATTGGATAGATTTCTCAACTGTCCTTCAAGCTTGGAGGTTGACAGAAGAATCAGCAATCCACTTTGCAGTGATTCAGATGATAAAGATGAAGATATTGAAAGAACCATTGGTCTTATCATTGGGAAATGCAAAGACATTTGGGCTGAT

mRNA sequence

ATGGAGCATAATAAACAAGAGTCTCGTGAAGAGTTCAGCGATTGGCCTCATGGATTGCTAGCAATTGGAACTTTTGGCAACAATGAGATTAAAGATGAACAAGACATACAAGAGGAGGAGGATCCATCTTCTTCAGAAGAGATAGTTGATATCTCTCCTGAAGAAGTTGGTAAATTACAGAAAGAGTTAACGAAGCTTTTATCTCGAAAACCGAACGCCGAAAAGCAGGTTGCAGATCTTCCATTGGATAGATTTCTCAACTGTCCTTCAAGCTTGGAGGTTGACAGAAGAATCAGCAATCCACTTTGCAGTGATTCAGATGATAAAGATGAAGATATTGAAAGAACCATTGGTCTTATCATTGGGAAATGCAAAGACATTTGGGCTGAT

Coding sequence (CDS)

ATGGAGCATAATAAACAAGAGTCTCGTGAAGAGTTCAGCGATTGGCCTCATGGATTGCTAGCAATTGGAACTTTTGGCAACAATGAGATTAAAGATGAACAAGACATACAAGAGGAGGAGGATCCATCTTCTTCAGAAGAGATAGTTGATATCTCTCCTGAAGAAGTTGGTAAATTACAGAAAGAGTTAACGAAGCTTTTATCTCGAAAACCGAACGCCGAAAAGCAGGTTGCAGATCTTCCATTGGATAGATTTCTCAACTGTCCTTCAAGCTTGGAGGTTGACAGAAGAATCAGCAATCCACTTTGCAGTGATTCAGATGATAAAGATGAAGATATTGAAAGAACCATTGGTCTTATCATTGGGAAATGCAAAGACATTTGGGCTGAT

Protein sequence

MEHNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQEEEDPSSSEEIVDISPEEVGKLQKELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLIIGKCKDIWAD

Homology

[Close]

BLAST of Carg18972-RA vs. NCBI nr
Match: XP_022953613.1 (uncharacterized protein LOC111456096 [Cucurbita moschata])

HSP 1 Score: 258.5 bits (659), Expect = 1.3e-65
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 2   EHNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQEEEDPSSSEEIVDISPEEVGKLQK 61
           +HNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQEEEDPSSSEEIVDISPEEVGKLQK
Sbjct: 27  QHNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQEEEDPSSSEEIVDISPEEVGKLQK 86

Query: 62  ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLII 121
           ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLII
Sbjct: 87  ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLII 146

Query: 122 GKCKDIWAD 131
           GKCKDIWAD
Sbjct: 147 GKCKDIWAD 155

[Close]

BLAST of Carg18972-RA vs. NCBI nr
Match: XP_022992360.1 (uncharacterized protein LOC111488695 [Cucurbita maxima])

HSP 1 Score: 253.8 bits (647), Expect = 3.1e-64
Identity = 125/129 (96.90%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 2   EHNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQEEEDPSSSEEIVDISPEEVGKLQK 61
           +H KQESREEFSDWPHGLLAIGTFGNN+IKDEQDIQEEEDPSSSE+IVDISPEEVGKLQK
Sbjct: 30  QHKKQESREEFSDWPHGLLAIGTFGNNDIKDEQDIQEEEDPSSSEQIVDISPEEVGKLQK 89

Query: 62  ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLII 121
           ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLII
Sbjct: 90  ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLII 149

Query: 122 GKCKDIWAD 131
           GKCKDIWAD
Sbjct: 150 GKCKDIWAD 158

[Close]

BLAST of Carg18972-RA vs. NCBI nr
Match: XP_023547536.1 (uncharacterized protein LOC111806450 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253.8 bits (647), Expect = 3.1e-64
Identity = 126/129 (97.67%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 2   EHNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQEEEDPSSSEEIVDISPEEVGKLQK 61
           +H KQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQEEEDPSSSEEIVDISPEEVGKLQK
Sbjct: 27  QHKKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQEEEDPSSSEEIVDISPEEVGKLQK 86

Query: 62  ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLII 121
           ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSD DDKDEDIERTIGLII
Sbjct: 87  ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDLDDKDEDIERTIGLII 146

Query: 122 GKCKDIWAD 131
           GKCKDIWAD
Sbjct: 147 GKCKDIWAD 155

[Close]

BLAST of Carg18972-RA vs. NCBI nr
Match: XP_004141714.1 (PREDICTED: uncharacterized protein LOC101207004 isoform X1 [Cucumis sativus] >KGN45473.1 hypothetical protein Csa_7G448840 [Cucumis sativus])

HSP 1 Score: 228.4 bits (581), Expect = 1.4e-56
Identity = 118/131 (90.08%), Postives = 121/131 (92.37%), Query Frame = 0


Query: 3   HNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQ---EEEDPSSSEEIVDISPEEVGKL 62
           H KQESREEFSDWPHGLLAIGTFGNNEIKD+ D +   EEE+PSSSEEIVD SPEEVGKL
Sbjct: 28  HKKQESREEFSDWPHGLLAIGTFGNNEIKDDSDQREDIEEENPSSSEEIVDFSPEEVGKL 87

Query: 63  QKELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGL 122
           QKELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPL SDSDDKDEDIERTI L
Sbjct: 88  QKELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLSSDSDDKDEDIERTISL 147

Query: 123 IIGKCKDIWAD 131
           IIGKCKDI AD
Sbjct: 148 IIGKCKDICAD 158

[Close]

BLAST of Carg18972-RA vs. NCBI nr
Match: XP_011659614.1 (PREDICTED: uncharacterized protein LOC101207004 isoform X2 [Cucumis sativus])

HSP 1 Score: 228.4 bits (581), Expect = 1.4e-56
Identity = 118/131 (90.08%), Postives = 121/131 (92.37%), Query Frame = 0


Query: 3   HNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQ---EEEDPSSSEEIVDISPEEVGKL 62
           H KQESREEFSDWPHGLLAIGTFGNNEIKD+ D +   EEE+PSSSEEIVD SPEEVGKL
Sbjct: 28  HKKQESREEFSDWPHGLLAIGTFGNNEIKDDSDQREDIEEENPSSSEEIVDFSPEEVGKL 87

Query: 63  QKELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGL 122
           QKELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPL SDSDDKDEDIERTI L
Sbjct: 88  QKELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLSSDSDDKDEDIERTISL 147

Query: 123 IIGKCKDIWAD 131
           IIGKCKDI AD
Sbjct: 148 IIGKCKDICAD 158

[Close]

BLAST of Carg18972-RA vs. TAIR10
Match: AT1G17400.1 (unknown protein)

HSP 1 Score: 140.2 bits (352), Expect = 9.0e-34
Identity = 83/152 (54.61%), Postives = 101/152 (66.45%), Query Frame = 0


Query: 3   HNKQESREEFSDWPHGLLAIGTFG--------------NNEIKDEQ----DIQEEEDPSS 62
           H KQE REEFSDWPH LLAIGTFG              + EI+ E+      ++EE+PSS
Sbjct: 27  HVKQEPREEFSDWPHALLAIGTFGTTSNSVSENESKNVHEEIEAEKKCTAQSEQEEEPSS 86

Query: 63  SEEIVDISPEEVGKLQKELTKLLSRKPNAEKQV-----ADLPLDRFLNCPSSLEVDRRIS 122
           S  + D +PEEVGKLQKEL KLLSR    +  V      +LPLDRFLNCPSSLEVDRRIS
Sbjct: 87  SVNLEDFTPEEVGKLQKELMKLLSRTKKRKSDVNRELMKNLPLDRFLNCPSSLEVDRRIS 146

Query: 123 NPLC----SDSDDKDEDIERTIGLIIGKCKDI 128
           N L     S  ++K+ED+ERTI +I+G+CK+I
Sbjct: 147 NALSAVVDSSEENKEEDMERTINVILGRCKEI 178

[Close]

BLAST of Carg18972-RA vs. TAIR10
Match: AT1G72490.1 (unknown protein)

HSP 1 Score: 140.2 bits (352), Expect = 9.0e-34
Identity = 82/145 (56.55%), Postives = 103/145 (71.03%), Query Frame = 0


Query: 9   REEFSDWPHGLLAIGTFGNN----EIKDEQDIQEE----------------EDPSSSEEI 68
           REEF+DWPHGLLAIGTFGN     +  D++ IQEE                ++ SSS+++
Sbjct: 32  REEFNDWPHGLLAIGTFGNKKQTPQTLDQEVIQEETVSNLHVEGRQAQDTDQELSSSDDL 91

Query: 69  -VDISPEEVGKLQKELTKLLS-----RKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPL 128
             D +PEEVGKLQKELTKLL+     RK +  +++A+LPLDRFLNCPSSLEVDRRISN L
Sbjct: 92  EEDFTPEEVGKLQKELTKLLTRRSKKRKSDVNRELANLPLDRFLNCPSSLEVDRRISNAL 151

[Close]

BLAST of Carg18972-RA vs. TrEMBL
Match: tr|A0A0A0K7Q1|A0A0A0K7Q1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448840 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 9.2e-57
Identity = 118/131 (90.08%), Postives = 121/131 (92.37%), Query Frame = 0


Query: 3   HNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQ---EEEDPSSSEEIVDISPEEVGKL 62
           H KQESREEFSDWPHGLLAIGTFGNNEIKD+ D +   EEE+PSSSEEIVD SPEEVGKL
Sbjct: 28  HKKQESREEFSDWPHGLLAIGTFGNNEIKDDSDQREDIEEENPSSSEEIVDFSPEEVGKL 87

Query: 63  QKELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGL 122
           QKELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPL SDSDDKDEDIERTI L
Sbjct: 88  QKELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLSSDSDDKDEDIERTISL 147

Query: 123 IIGKCKDIWAD 131
           IIGKCKDI AD
Sbjct: 148 IIGKCKDICAD 158

[Close]

BLAST of Carg18972-RA vs. TrEMBL
Match: tr|A0A1S3CH46|A0A1S3CH46_CUCME (uncharacterized protein LOC103500678 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500678 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 2.0e-56
Identity = 117/130 (90.00%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 3   HNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQ--EEEDPSSSEEIVDISPEEVGKLQ 62
           H KQESREEFSDWPHGLLAIGTFGNNEIKD+ + +  EEE+PSSSEEIVD SPEEVGKLQ
Sbjct: 28  HKKQESREEFSDWPHGLLAIGTFGNNEIKDDSERRDIEEENPSSSEEIVDFSPEEVGKLQ 87

Query: 63  KELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLI 122
           KELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPL SDSDDKDEDIERTI LI
Sbjct: 88  KELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLSSDSDDKDEDIERTISLI 147

Query: 123 IGKCKDIWAD 131
           IGKCKDI AD
Sbjct: 148 IGKCKDICAD 157

[Close]

BLAST of Carg18972-RA vs. TrEMBL
Match: tr|A0A1S3CI43|A0A1S3CI43_CUCME (uncharacterized protein LOC103500678 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500678 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 2.0e-56
Identity = 117/130 (90.00%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 3   HNKQESREEFSDWPHGLLAIGTFGNNEIKDEQDIQ--EEEDPSSSEEIVDISPEEVGKLQ 62
           H KQESREEFSDWPHGLLAIGTFGNNEIKD+ + +  EEE+PSSSEEIVD SPEEVGKLQ
Sbjct: 28  HKKQESREEFSDWPHGLLAIGTFGNNEIKDDSERRDIEEENPSSSEEIVDFSPEEVGKLQ 87

Query: 63  KELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLI 122
           KELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPL SDSDDKDEDIERTI LI
Sbjct: 88  KELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLSSDSDDKDEDIERTISLI 147

Query: 123 IGKCKDIWAD 131
           IGKCKDI AD
Sbjct: 148 IGKCKDICAD 157

[Close]

BLAST of Carg18972-RA vs. TrEMBL
Match: tr|A0A2I4G5M8|A0A2I4G5M8_9ROSI (uncharacterized protein LOC109004956 isoform X1 OS=Juglans regia OX=51240 GN=LOC109004956 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 3.5e-48
Identity = 97/129 (75.19%), Postives = 115/129 (89.15%), Query Frame = 0


Query: 3   HNKQESREEFSDWPHGLLAIGTFGNNEIKDE-QDIQEEEDPSSSEEIVDISPEEVGKLQK 62
           H KQE REEF+DWPHGLLAIGTFGNN++K+  +    ++DPSSSEE++D +PEEVGKLQK
Sbjct: 28  HVKQEPREEFNDWPHGLLAIGTFGNNDLKENLESRNSQDDPSSSEEVLDFTPEEVGKLQK 87

Query: 63  ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLII 122
           ELTKLLSRKPN EK+VADLPLDRFLNCPSSLEVDRRISN LCS+S D+DEDI+RTI +II
Sbjct: 88  ELTKLLSRKPNKEKEVADLPLDRFLNCPSSLEVDRRISNALCSESGDRDEDIDRTISVII 147

Query: 123 GKCKDIWAD 131
           G+C++I AD
Sbjct: 148 GRCREICAD 156

[Close]

BLAST of Carg18972-RA vs. TrEMBL
Match: tr|A0A2I4G5P7|A0A2I4G5P7_9ROSI (uncharacterized protein LOC109004956 isoform X2 OS=Juglans regia OX=51240 GN=LOC109004956 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 3.5e-48
Identity = 97/129 (75.19%), Postives = 115/129 (89.15%), Query Frame = 0


Query: 3   HNKQESREEFSDWPHGLLAIGTFGNNEIKDE-QDIQEEEDPSSSEEIVDISPEEVGKLQK 62
           H KQE REEF+DWPHGLLAIGTFGNN++K+  +    ++DPSSSEE++D +PEEVGKLQK
Sbjct: 22  HVKQEPREEFNDWPHGLLAIGTFGNNDLKENLESRNSQDDPSSSEEVLDFTPEEVGKLQK 81

Query: 63  ELTKLLSRKPNAEKQVADLPLDRFLNCPSSLEVDRRISNPLCSDSDDKDEDIERTIGLII 122
           ELTKLLSRKPN EK+VADLPLDRFLNCPSSLEVDRRISN LCS+S D+DEDI+RTI +II
Sbjct: 82  ELTKLLSRKPNKEKEVADLPLDRFLNCPSSLEVDRRISNALCSESGDRDEDIDRTISVII 141

Query: 123 GKCKDIWAD 131
           G+C++I AD
Sbjct: 142 GRCREICAD 150

The following BLAST results are available for this feature:

BLAST of Carg18972-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953613.1	1.3e-65	99.22	uncharacterized protein LOC111456096 [Cucurbita moschata]	[more]
XP_022992360.1	3.1e-64	96.90	uncharacterized protein LOC111488695 [Cucurbita maxima]	[more]
XP_023547536.1	3.1e-64	97.67	uncharacterized protein LOC111806450 [Cucurbita pepo subsp. pepo]	[more]
XP_004141714.1	1.4e-56	90.08	PREDICTED: uncharacterized protein LOC101207004 isoform X1 [Cucumis sativus] >KG...	[more]
XP_011659614.1	1.4e-56	90.08	PREDICTED: uncharacterized protein LOC101207004 isoform X2 [Cucumis sativus]	[more]

BLAST of Carg18972-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G17400.1	9.0e-34	54.61	unknown protein	[more]
AT1G72490.1	9.0e-34	56.55	unknown protein	[more]

BLAST of Carg18972-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18972-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K7Q1\|A0A0A0K7Q1_CUCSA	9.2e-57	90.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448840 PE=4 SV=1	[more]
tr\|A0A1S3CH46\|A0A1S3CH46_CUCME	2.0e-56	90.00	uncharacterized protein LOC103500678 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3CI43\|A0A1S3CI43_CUCME	2.0e-56	90.00	uncharacterized protein LOC103500678 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2I4G5M8\|A0A2I4G5M8_9ROSI	3.5e-48	75.19	uncharacterized protein LOC109004956 isoform X1 OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A2I4G5P7\|A0A2I4G5P7_9ROSI	3.5e-48	75.19	uncharacterized protein LOC109004956 isoform X2 OS=Juglans regia OX=51240 GN=LOC...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg18972	Carg18972	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg18972-RA.CDS.2	Carg18972-RA.CDS.2	CDS
Carg18972-RA.CDS.1	Carg18972-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg18972-RA.exon.2	Carg18972-RA.exon.2	exon
Carg18972-RA.exon.1	Carg18972-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg18972-RA	Carg18972-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 56..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
None	No IPR available	PANTHER	PTHR34045:SF3	SUBFAMILY NOT NAMED	coord: 2..129
None	No IPR available	PANTHER	PTHR34045	FAMILY NOT NAMED	coord: 2..129