Carg18724-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CTTTTCCATTGGATGACTCGGTCATTTACTCTCCCTCTTTCTTCCGCTGCTTCACGTACTTCCCTCTTCCCACTCCGTCTCCTTCTCGATTGCTTTAATGGCCAAGATCTCACATCCGCCGCACAAGAATTCCATTTCTACCACCGCTAATTCTCAGTCTTCTACAGTCCATCACAGCCAGAAGAAGGTACTCAAGCGTACGCGTAAGTCCACTCCTCGAGATGCTCCTGCTCAGCGTAGCTCTGTTTACCGCGGAGTCACCAGGTTAGCCATTATCGGTTTGGTTAAAACTTAAAAGCTATTCAATCGGTTGATTTTTTTTTTTTTTTTTCTAAAAGTTTGAATCGATTTGGTTTACTTTAGGCATAGATGGACGGGACGGTATGAGGCGCATTTGTGGGATAAGAATTGCTGGAATGAAGGACAGAATAAGAAAGGAAGACAAGGTTCTGTAATCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCTTTCAATCTGTGATGTTTGGTTGCGATCCTGATTTTACTCTTCTTTGATCTTTTGATTTATGCCTCTGTATTGCGGTGCGTTGGTTTATTCGTGGAATCTGAACCGAAACGCGCAGTGTATTTAGGTATTTCTGCGATTGGAACTTTGACTTGCGATTTAGCCATGAAACAGAGTGATCGGTGTAAGTATGTGTACTGTTGTTTTCTTCTGATCTACAGGAGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGACCTTGCTGCGCTCAAGTACTGGGGAACTGAAACTGTTCTCAACTTTCCAGTAATTTTCCAATTGATCGATTGTTGTTCCGCATTCACTTGTTTATTTTATTTGTTCTTTTGCCTATAAGGAAATCAAGAAATTGGTTGAAGATCATCTGTTCAAGTCCTCTGATCTTATTGTTTGTAGCTATTAACGTACCAAGACGAGCTTAAAGAAATGGAAGGTCAATCAAGAGAGGAGTATATTGGATATTTGAGAAGGTAATTACCATTTCCAGAGATTTGATTTCTGCTTAAACTTTAAATTAGAATCCATATCCATTTTTATGAGTTCAATCCACAGGAAGAGTAGCGGCTTTTCTCGCGGGGTTTCGAAGTACAGAGGTGTAGCAAGGTACCATAGCCTCCACTATAACACGACTGTTGCCTCATTATTAAGAAGATTATTAGTTTGTGTGTGACATCTGTTTATTTCTTTTTATTTTAAAAATAATAAAAGGTGGATTCTGCCAAAGAAATTGGGAACTTCTCTTTTCCGCATGGAAACAAATATTTTAAAACTTATAATTTAAATTATAAATTTAGCTTTTAACCTTAAAATTATTTAATTTTTAAAAGTATCTGATTACTATTTGAATCTTAAACATGTAAATAAGTTTTCAAAACATATTTAAATTTTAAAAATTAATTGATTTTCTAAGTATAAAATTGAGTTTTATGCTTAATAAAATTTTAAATTTTCAACTTTTAATGATGAATTTTTTTAGATACAAAATAAAAAATTAAAGAACTTATTGCACATTTTTTAAATTTAGTTATCACAAAGATACACAAGCATACAAAAATTTGGTGTAATTTCTGTTTTTTTTTTTCTTTTTTACCTACAAATTTGTTATACCTTTGTTGACTTTGGATTGCTATGGATTGCTATGGATTGCTAGAAGAATGTGTTGCAAGAGCTTTAATTTTGCAACTACCCATCTGTTTGTTGGTTTAGGATTTAAAAAGTTAGTTTATAGCATAAAAGGTATGCATGAATTGGGCTTATGTTATCCATGTAATTAGTAAATTTGTAGCTTCTGGAAAACAATTTTATGCATCAAATGTAAACTAGGCTTCCTTTCTTAACCAAAGTCAAACACTCCGTAGCTGTCTATCTATGCAAATATATGAAAAATCTAACGTGTTGCGTGTGGAACTTTCTTGGTTAACTTTCTACGTTGCCTTTTTTCCAGTTTCCTTGTGCTATCAATTTGTGAAATTTCTCTTTCCACTCACAGTAGGGACCATTAATGATATCGTCGTTCAACTACTAACCAAGAAGAAGGAAAAAAAAAAAAAAAAAAAAACTACATGTCGGTATTTCTCCATAAAAAAAAAAAATTTAAAAAGTTTGTGCTGATCAATTTTTATGCACTGTTTGTCCAACTGGATTCTTAACTAACAAAAACTCTTGAAACTTATTGAACTTGAAGAAAACTTAAGTGATTGAAGTGTATATTCCTTTTTTTTTTTTTTTTTTTTAGAGATTAAACTGTCTTGTGTTCTTCCTTTTTTTTGCAATGTTATAAATGCTGCACATGGTTGCTGACATGTAACATACTTTTATTTGTTAAGCTTGAATGAGTTCATATCATAATTTTTTTTTTTTTCGTTACAACATTGAATTCTTGAATGATAGAGATTATGAGGAATAATGATGATATTATTTCTGCATAAAATTTAAGATTTAACTACCCGTAGATATAGTAATTTCAACTAAGTTGAATAAACAAACCTAAACAAACCATATTTCTGTGGAAGACAATCTTGACATGTAAAGTTATTTGTATGTTATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTGACCTATTTTGTATTACAATATAGTATTATATTGTTCGCTTTAAACATAAATTCTCATATGATTTTATCTTTAGTTTTACAGAGTGGTCTTTAAAGATGTATTGTTTACAATTTATAACATTTACTTATAAATTTATGATTACATATTTATGATCTTCCCACCTAATAATACTCCATTTTACATTTTCTTTTTGATGTTTAGTACTTGAAAATTGAAAGAGTTTGGGTTTGGGTTCGTGTAAAATGATTACATTGCTGCAGGCACCATCATAATGGAAGATGGGAAGCTCGAATCGGCAGAGTGTTTGGCAACAAATACCTTTACCTTGGAACATACGGTAATTTCCTCAATTTTTAAAAAATCATTATTTCTCATGAACATAACTAACATTATATTATCATAAAGTTGCCATCACACATCACACTCTTTAATACTCGGCATGGATATGAATAGTCTTATTATCTCTTTCTCTTGTGTATAGTCCCATATGTCATCCTATTCCTTTCACCCAAAGATTAATTTATATTATCATCTTCCTCTTGCATATTCATGAATATGCTCTAAAAACCCATAATATTGATTATAAAGAAACTTACTCATTTCATTTAAAAAAAAAAAAAAAAAGTATGCTATAATCTACTACACCATCATCATTTTAAAGATATTTTAACAAATGGTGAAGGTTTTGTTTGATAGCTAGCGGTTGGTTATAATTATTTTGATAAAATAAAGTTCTACTATTGGATAACTACCTATTTTATTTTATTTATTTATTATTATTATTATTATTTTGGTAGGGATTGTTTTCACTTGATTTTTCTTTAGTTTTTTTTTTTAAAAAAAAAATTATAAAATCATGTTTATTTATTCTACTTAAAATATTAGCTGAACTTCGATACTTAAAAATGAATCTATTTTACTTCTAAAGTTTTGTTATTTATTTCATAAATATGTCTTCAAAATTGCAGTAAATCGTGAAAACAAAACAAAGTAGTTTTATAAAAAAGTTATTTTTATTTCTAAAATTCAACTATTTTAGCTAATGAATCAAAAGTTTCTTTTAAACTATAAAAATTAAAAGAAAAACAATACGGGATAAAATTTAAAAATAGAAAACTAAAAGTTAAATCAGGGTCAAATAGAACTTAGTTTTCAAAATTTTACCTCTTTTATTATTATTATTATTATTATTTTTGTTTAAAGAATTTTAAGTAGGACATCCCAAACTTAATTTTTTAAAAAATAAGATATTAAGATTATTTTTTTTCTTTCTAAAATAATCTAAAATATTTAAATATATATGCAACTAAATCCAGTTGTTGGGATGTAGATCACCAAACCTCAACTGCTGCTTGGCCAGCCATTTAAGATTATTCATTTTGACACATCATTTCATAAATTTTTCAATATCCTCCCACCAAATTTTGCATACAGATTAAGAACTCCAATTTATTATTATTATTTTTTAAATTTGCTCTCTCTTATATTATTATCTTCAATTTATTTATTTTTATTATTATTATTACTTTCACAGCTACCCAAGAGGAAGCTGCCACAGCTTACGACATGGCCGCCATAGAATACCGTGGCCTTAACGCCGTTACAAATTTCGACCTCAGCCGTTATATCAAATACCTCCGTCCTGAGGAACAAGATATCCCAAACAACAATAACCGTCCACCAAGCCCTAACGCCGGTAAAACGACTTCAGAATTGGACCCCAAATCCCTCCTTGAATTCACCTTTCCGTCCCAATGTTCGAGTTCCGACCAACCCATCTCCACGCCACCGCTGGGACCTGACGGCGGTGACTCCTCGTCGTCGTCGTCGTCGAACACGCTGGAGCTTCTACTCCATTCCTCGAAATTTAAAGATATAATAGAAAGAAAACCCACCGCCGACCCTCCACAGACGCCGCCGGAATCTGACCGGCCTCGCCGCTGTATTCCTGACGACATTCAAACTTACTTCGATTGTACTCAAGATTCCGACGACATTGCCGAAGGCGACGACGGCATTTTTGGGTATCTAAATTCGTTTTTACCTTCATCAATTTTTCACTACGCACTCGATGCTTAA CTTTTCCATTGGATGACTCGGTCATTTACTCTCCCTCTTTCTTCCGCTGCTTCACGTACTTCCCTCTTCCCACTCCGTCTCCTTCTCGATTGCTTTAATGGCCAAGATCTCACATCCGCCGCACAAGAATTCCATTTCTACCACCGCTAATTCTCAGTCTTCTACAGTCCATCACAGCCAGAAGAAGGTACTCAAGCGTACGCGTAAGTCCACTCCTCGAGATGCTCCTGCTCAGCGTAGCTCTGTTTACCGCGGAGTCACCAGGCATAGATGGACGGGACGGTATGAGGCGCATTTGTGGGATAAGAATTGCTGGAATGAAGGACAGAATAAGAAAGGAAGACAAGGAGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGACCTTGCTGCGCTCAAGTACTGGGGAACTGAAACTGTTCTCAACTTTCCAGAAATCAAGAAATTGGTTGAAGATCATCTGTTCAAGTCCTCTGATCTTATTCTATTAACGTACCAAGACGAGCTTAAAGAAATGGAAGGTCAATCAAGAGAGGAGTATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGCGGGGTTTCGAAGTACAGAGGTGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCTCGAATCGGCAGAGTGTTTGGCAACAAATACCTTTACCTTGGAACATACGCTACCCAAGAGGAAGCTGCCACAGCTTACGACATGGCCGCCATAGAATACCGTGGCCTTAACGCCGTTACAAATTTCGACCTCAGCCGTTATATCAAATACCTCCGTCCTGAGGAACAAGATATCCCAAACAACAATAACCGTCCACCAAGCCCTAACGCCGGTAAAACGACTTCAGAATTGGACCCCAAATCCCTCCTTGAATTCACCTTTCCGTCCCAATGTTCGAGTTCCGACCAACCCATCTCCACGCCACCGCTGGGACCTGACGGCGGTGACTCCTCGTCGTCGTCGTCGTCGAACACGCTGGAGCTTCTACTCCATTCCTCGAAATTTAAAGATATAATAGAAAGAAAACCCACCGCCGACCCTCCACAGACGCCGCCGGAATCTGACCGGCCTCGCCGCTGTATTCCTGACGACATTCAAACTTACTTCGATTGTACTCAAGATTCCGACGACATTGCCGAAGGCGACGACGGCATTTTTGGGTATCTAAATTCGTTTTTACCTTCATCAATTTTTCACTACGCACTCGATGCTTAA ATGGCCAAGATCTCACATCCGCCGCACAAGAATTCCATTTCTACCACCGCTAATTCTCAGTCTTCTACAGTCCATCACAGCCAGAAGAAGGTACTCAAGCGTACGCGTAAGTCCACTCCTCGAGATGCTCCTGCTCAGCGTAGCTCTGTTTACCGCGGAGTCACCAGGCATAGATGGACGGGACGGTATGAGGCGCATTTGTGGGATAAGAATTGCTGGAATGAAGGACAGAATAAGAAAGGAAGACAAGGAGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGACCTTGCTGCGCTCAAGTACTGGGGAACTGAAACTGTTCTCAACTTTCCAGAAATCAAGAAATTGGTTGAAGATCATCTGTTCAAGTCCTCTGATCTTATTCTATTAACGTACCAAGACGAGCTTAAAGAAATGGAAGGTCAATCAAGAGAGGAGTATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGCGGGGTTTCGAAGTACAGAGGTGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCTCGAATCGGCAGAGTGTTTGGCAACAAATACCTTTACCTTGGAACATACGCTACCCAAGAGGAAGCTGCCACAGCTTACGACATGGCCGCCATAGAATACCGTGGCCTTAACGCCGTTACAAATTTCGACCTCAGCCGTTATATCAAATACCTCCGTCCTGAGGAACAAGATATCCCAAACAACAATAACCGTCCACCAAGCCCTAACGCCGGTAAAACGACTTCAGAATTGGACCCCAAATCCCTCCTTGAATTCACCTTTCCGTCCCAATGTTCGAGTTCCGACCAACCCATCTCCACGCCACCGCTGGGACCTGACGGCGGTGACTCCTCGTCGTCGTCGTCGTCGAACACGCTGGAGCTTCTACTCCATTCCTCGAAATTTAAAGATATAATAGAAAGAAAACCCACCGCCGACCCTCCACAGACGCCGCCGGAATCTGACCGGCCTCGCCGCTGTATTCCTGACGACATTCAAACTTACTTCGATTGTACTCAAGATTCCGACGACATTGCCGAAGGCGACGACGGCATTTTTGGGTATCTAAATTCGTTTTTACCTTCATCAATTTTTCACTACGCACTCGATGCTTAA MAKISHPPHKNSISTTANSQSSTVHHSQKKVLKRTRKSTPRDAPAQRSSVYRGVTRHRWTGRYEAHLWDKNCWNEGQNKKGRQGAYDDEEAAAHAYDLAALKYWGTETVLNFPEIKKLVEDHLFKSSDLILLTYQDELKEMEGQSREEYIGYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKYLRPEEQDIPNNNNRPPSPNAGKTTSELDPKSLLEFTFPSQCSSSDQPISTPPLGPDGGDSSSSSSSNTLELLLHSSKFKDIIERKPTADPPQTPPESDRPRRCIPDDIQTYFDCTQDSDDIAEGDDGIFGYLNSFLPSSIFHYALDA
BLAST of Carg18724-RA vs. NCBI nr
Match: XP_022953877.1 (AP2-like ethylene-responsive transcription factor At1g16060 [Cucurbita moschata]) HSP 1 Score: 685.6 bits (1768), Expect = 9.2e-194 Identity = 361/381 (94.75%), Postives = 361/381 (94.75%), Query Frame = 0
BLAST of Carg18724-RA vs. NCBI nr
Match: XP_023547745.1 (AP2-like ethylene-responsive transcription factor At1g16060 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 672.5 bits (1734), Expect = 8.1e-190 Identity = 344/381 (90.29%), Postives = 345/381 (90.55%), Query Frame = 0
BLAST of Carg18724-RA vs. NCBI nr
Match: XP_022991907.1 (AP2-like ethylene-responsive transcription factor At1g16060 [Cucurbita maxima]) HSP 1 Score: 660.2 bits (1702), Expect = 4.2e-186 Identity = 338/381 (88.71%), Postives = 341/381 (89.50%), Query Frame = 0
BLAST of Carg18724-RA vs. NCBI nr
Match: XP_023513543.1 (AP2-like ethylene-responsive transcription factor At1g79700 [Cucurbita pepo subsp. pepo] >XP_023513544.1 AP2-like ethylene-responsive transcription factor At1g79700 [Cucurbita pepo subsp. pepo] >XP_023513545.1 AP2-like ethylene-responsive transcription factor At1g79700 [Cucurbita pepo subsp. pepo] >XP_023513546.1 AP2-like ethylene-responsive transcription factor At1g79700 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 538.1 bits (1385), Expect = 2.4e-149 Identity = 291/383 (75.98%), Postives = 305/383 (79.63%), Query Frame = 0
BLAST of Carg18724-RA vs. NCBI nr
Match: XP_011659487.1 (PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Cucumis sativus] >KGN45200.1 hypothetical protein Csa_7G431330 [Cucumis sativus]) HSP 1 Score: 535.8 bits (1379), Expect = 1.2e-148 Identity = 293/390 (75.13%), Postives = 304/390 (77.95%), Query Frame = 0
BLAST of Carg18724-RA vs. TAIR10
Match: AT1G16060.1 (ARIA-interacting double AP2 domain protein) HSP 1 Score: 338.6 bits (867), Expect = 5.0e-93 Identity = 210/378 (55.56%), Postives = 240/378 (63.49%), Query Frame = 0
BLAST of Carg18724-RA vs. TAIR10
Match: AT1G79700.2 (Integrase-type DNA-binding superfamily protein) HSP 1 Score: 328.9 bits (842), Expect = 4.0e-90 Identity = 198/378 (52.38%), Postives = 232/378 (61.38%), Query Frame = 0
BLAST of Carg18724-RA vs. TAIR10
Match: AT3G54320.1 (Integrase-type DNA-binding superfamily protein) HSP 1 Score: 272.7 bits (696), Expect = 3.4e-73 Identity = 137/194 (70.62%), Postives = 152/194 (78.35%), Query Frame = 0
BLAST of Carg18724-RA vs. TAIR10
Match: AT5G57390.1 (AINTEGUMENTA-like 5) HSP 1 Score: 241.9 bits (616), Expect = 6.4e-64 Identity = 139/272 (51.10%), Postives = 177/272 (65.07%), Query Frame = 0
BLAST of Carg18724-RA vs. TAIR10
Match: AT5G17430.1 (Integrase-type DNA-binding superfamily protein) HSP 1 Score: 239.2 bits (609), Expect = 4.2e-63 Identity = 124/207 (59.90%), Postives = 151/207 (72.95%), Query Frame = 0
BLAST of Carg18724-RA vs. Swiss-Prot
Match: sp|Q94AN4|AP2L1_ARATH (AP2-like ethylene-responsive transcription factor At1g16060 OS=Arabidopsis thaliana OX=3702 GN=At1g16060 PE=2 SV=1) HSP 1 Score: 338.6 bits (867), Expect = 9.1e-92 Identity = 210/378 (55.56%), Postives = 240/378 (63.49%), Query Frame = 0
BLAST of Carg18724-RA vs. Swiss-Prot
Match: sp|A0JPZ8|AP2L3_ARATH (AP2-like ethylene-responsive transcription factor At1g79700 OS=Arabidopsis thaliana OX=3702 GN=At1g79700 PE=2 SV=1) HSP 1 Score: 299.3 bits (765), Expect = 6.1e-80 Identity = 188/378 (49.74%), Postives = 222/378 (58.73%), Query Frame = 0
BLAST of Carg18724-RA vs. Swiss-Prot
Match: sp|Q6X5Y6|WRI1_ARATH (Ethylene-responsive transcription factor WRI1 OS=Arabidopsis thaliana OX=3702 GN=WRI1 PE=2 SV=1) HSP 1 Score: 272.7 bits (696), Expect = 6.1e-72 Identity = 137/194 (70.62%), Postives = 152/194 (78.35%), Query Frame = 0
BLAST of Carg18724-RA vs. Swiss-Prot
Match: sp|Q84Z02|CRL5_ORYSJ (AP2-like ethylene-responsive transcription factor CRL5 OS=Oryza sativa subsp. japonica OX=39947 GN=CRL5 PE=2 SV=1) HSP 1 Score: 249.2 bits (635), Expect = 7.2e-65 Identity = 124/187 (66.31%), Postives = 145/187 (77.54%), Query Frame = 0
BLAST of Carg18724-RA vs. Swiss-Prot
Match: sp|Q6PQQ3|AIL5_ARATH (AP2-like ethylene-responsive transcription factor AIL5 OS=Arabidopsis thaliana OX=3702 GN=AIL5 PE=2 SV=2) HSP 1 Score: 241.9 bits (616), Expect = 1.2e-62 Identity = 139/272 (51.10%), Postives = 177/272 (65.07%), Query Frame = 0
BLAST of Carg18724-RA vs. TrEMBL
Match: tr|A0A0A0K667|A0A0A0K667_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G431330 PE=4 SV=1) HSP 1 Score: 535.8 bits (1379), Expect = 7.8e-149 Identity = 293/390 (75.13%), Postives = 304/390 (77.95%), Query Frame = 0
BLAST of Carg18724-RA vs. TrEMBL
Match: tr|A0A1S3CFD7|A0A1S3CFD7_CUCME (AP2-like ethylene-responsive transcription factor At1g16060 OS=Cucumis melo OX=3656 GN=LOC103499858 PE=4 SV=1) HSP 1 Score: 524.6 bits (1350), Expect = 1.8e-145 Identity = 297/389 (76.35%), Postives = 310/389 (79.69%), Query Frame = 0
BLAST of Carg18724-RA vs. TrEMBL
Match: tr|A0A2K2B973|A0A2K2B973_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_003G185300v3 PE=4 SV=1) HSP 1 Score: 424.1 bits (1089), Expect = 3.3e-115 Identity = 238/382 (62.30%), Postives = 265/382 (69.37%), Query Frame = 0
BLAST of Carg18724-RA vs. TrEMBL
Match: tr|A0A218WA58|A0A218WA58_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr014007 PE=4 SV=1) HSP 1 Score: 423.3 bits (1087), Expect = 5.7e-115 Identity = 230/348 (66.09%), Postives = 253/348 (72.70%), Query Frame = 0
BLAST of Carg18724-RA vs. TrEMBL
Match: tr|A0A067KRL4|A0A067KRL4_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04085 PE=4 SV=1) HSP 1 Score: 415.2 bits (1066), Expect = 1.5e-112 Identity = 232/375 (61.87%), Postives = 268/375 (71.47%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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