Carg18706-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18706-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ecotropic viral integration site protein
Location	Cucurbita_argyrosperma_scaffold_139 : 244157 .. 249161 (+)
Sequence length	987

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGTGTATTCCGTAGTTCATGCAAACGAGAGAGCGTGTCACATCGGCAACAATAATCGCCGATCCATCGTCAAAGGGATCAGATTGGTCGTCGTTCGTTCTACAAGTACCGAAATCCCGAAACATCACTCAGTAAATTCCGAAGCCGATCACAGAAAAACATGGATCAGGAAGGGAAGGCAGACGAGCAACTGTTCAACCTTCTTGCCAGTCTTCTCCACCAGGTCGCAATTTCGCACGACTTTCCTCCTGATTCATCAATTTTTCAATGTTTAGTTCATCTATCCTATTCGATTTTATAATTCTATTCGTGATTGAAGAGTATTTATGGATTGGAATTGACTAGTTTGTCATCTAGGTATTGTCGAGACGTTCCGTTAGAACGACGAGTTAGGTTGATTGTGTTTTTTTAGATGTTTCGAAAAGTGAGTAAATAATCAGGATCGAGTTCGATGGTGCTTGCTCGATGACCGATGTTGCGTTGCGTCGATATTTTATTCTCTAGTATTTATTTTGGGAAATTTTTAATTACAGAGAAATAGGTGTTGGGGCTCCATGACGGCAAGTTTTGGGGCTGTAGTGTTTCCTGTTATGTGTTATTGATTAAACCTTCTCTCATCTTTAATTTCACTCGAACATTGATCCTTGAGTGCTGGGTGGTTGAAGATTGGTTGGATCGTGTTTTATCGGGCACTGCGTATAGCTAAATTGTTCTAAGCATGTAAGAATTCTGTGTATGCTTAAGAAACATAGAAGAAGGTAATTGGCATTTCAATTATTTATAAATGACGTTGGGGCATTGTTGCAGTAGAAGATAATGGTCTATGCAAAAAGTAGCAAGCAAGAGGGTTCTTACTATGCAATTGGTTATTGATGTACGCACTGCCCTAGTTTGAACTTTAATTCAGTGTTAGGAAGTATACATTTAAGAGAACCATAGTGATCTAACTCCTGTACTCAGTTTTTACCAACCAAATTTTCCCTTACTATCCTTATTCTGTGTTAATTGTCTGCTGAGGATTATTGGGAGTGAGTCTCACATTGGTTAATTTAGTGGAAGATTATGAGTTTATAAGTGAGGAATACTATATCCATTGGTACGATGTCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACTATTGTGGAGAGTTGTGATTCCTAATATTGTCATGTTCATGGATCATGTATCATGTTTTTCAGTTTTATGTTTTACCTACCAAACTCGCCACAATACTTATATTGGTAATGCCTCCTACGATGATAAGTAACCGACACCTCTCAGTTCACACGTTTGGATTTCTCTTCCAAAACCGGCTCAAATTTTATTTTTCATAACATTGACATGGGGTTGGGTCAAGGAATACTCCTTCAAGTCTTATTTATATTCTCACAAACCACACTTTCATTATTATGCACCGAGATTCATGGGATGTGAAATCTCTAAGTTTGCGTCTTCATTCCCTCAATGACAAAAATTTGTCTCGTCGTGAATCAAGATATTCTCCATCCATCAACTAATTGTACTTTATCCAGTGTTTGAACGTACTTCATGTTATTGGAAACTACGAAGGTTAGTAGCACCGATTATAAAAAGGAAAGTGAGAGATTTTTTATGGGTAACAAGTGTCGAAAAGTTGAGCCATCTTGTTAACCAGCACATTGAAGCTGTACACTAGAGTTGGGAAGGGCTTGGAATGGATAACTTAGGGAGGGAAACATAATCTCTTGATAAAATGGCCACGAAGACTCCCTCCAAAGATTAAAGAACTTTGGAATAGAAGTGATTACCAGTTACTACAGGAAGAAGGAGGGGTGTGGTTGGCCATACAGAGACAGTGTGAAGTACATGTAATCCTTGGAACATATCTAACCTAATAGAGTGCTTTTCTTCAATTAAAGTGTCTAATGCGTTAGATTCATCCTTTTGGAACAACTTTTGTGTTGGGATTAGCCTCTGTCTATGGTTTTTACGATTTGGCATAGTGACATCTAATAAGGAGTGTGACAATCCAATGGGCATGGGGGAGAATTCTAGTTATTGGAAGGAAGGTACTTTCTAGAAATTCTTCTACCGTTTTTTTGGGTAAGAGGAGGTGAGCGAGCTTCAAGATCTGAATGAACTACATCCAGAGGGGAGGACAATCAATTTCCCCCTTATTTAATTAGCCTAAGACTCGATCATGTTACCATTCCTAGGAATGTAATGATGCAAACACAATGTTGAGTTCTGCTATCACTTGGACATGATGTGCAACCTGGACTACCGTACAATTGCGTTGATCTTTAGTACCCTCCGGTCATTTCATCTCTCAGCTTCTAGCTTCACAGTTCGATCTCTAGACATCTCAACCAGTGAGGATATTTGCAAAAATCAAGCTCGTACATCTGGTTGGAAGAAAAACTTATACACTGATCTTAGTATTAAGAATCATTAAAAAAGACTAGCCTCTATCCAGCCAGCCTACAACATACCAACTACGAAAGACTTGAGAACAATTACTTATAAAAGACAGTCATTGATGCAAAACTAAAGTAATTTGTTGAACATGCGGATGAGTTTGGCTGTAGGATAGGACAGGGGCATGATATTGTGAAGGGCGTTTGGCCAATGATACTTGATGCGAAAAGGAAACTTCAAGTGCAAGAGGGCATAGAACCAAAAGCACACTTTGAACAAAAATTTACAATGGTGTTGGAGAGATTCCTCATAGATATGGGTTCATACTTGAGGCATTGTGTGCTTCACTCCATGGGCAGGTGGATTGATATATCTAAGAGGCAATACAAAATTTTGGTTTTAATCGTTATAGGTGAGCACATGCTAAAGGACTGGAGTTTTGGGAGCTATTTCTTCCATTGAAGTCAAGTTGAATTGCCATGGTAGCAGTGAAAAGTCTGAGAAGTAGTTTACTATCTTGTTGTTCAAAATTGAAAATAATTAATTCTTCAGTTTCTTCATCCTTGCTTGGAGCTGATTGAGAAATGCTATCTAAATTTGCTATCTGTAACCAGAAATGAGAAGATTTTTTTTTTCTTTACTTAAAACTTCAAAAGTTCTTCTATATTATAAAGAAGACATTTTACGAGGTCAAGAAATTTTGTTCATACTTATGTTGGAGTTATTAATATTTGGCTCTTTATTTCTCTATTTCATGCTTTGCAATTATATCTATATTTCAATGTTATTTACCAAATTGAAACTTACATGCATGGTTCATTATGATACACGATATACTAAAATTTAATTTTGATACTCTTCTGTTTCACGAGTTAACAACCTTGGTTATGATATCATTTGATACAAAGTACATACAGAATCTAAATTTTTGTTGCACCATTCCCTTTGGGAATTGCACTGGGAAGCAGTTACAAGATTCTCCAGTTCTCGTTTGTTTGCCATTTACTAAATGCATTGTGCATTGAGTAGAAAACTTTTGGGCAAAAATGGTGAACGTCTTTGTCTATTATTGACCATGGAATGAGAAAAGCTAATTTCATAAAATTGTTATGAACTTATGATATCATTTAACGGAAGCACATGCTTTTAGATAAACATGGGTTCCTTCTCTAAACCAATTGGCAATGAGGGGAGTACTTCATCTTTCCAATGTGGAATCCTCAACATGCCCCTCAAGATGGGACCTCTTTGGATTTGCCACTCTTGAATCCGATCCCAATTTGTTTTTAGACTGAATATTCATTAGAGCTTTATAGGCTCCGATACCATGTTAGATACATATGGAGTTCTATCTCAAAATCCATTGACAATGAGAGATGTAATCCATTTATTTTATAAAGATTGTGTGGTCTCTTCATTTTTCTGATGTGGGATTGACACCATGCCCTCTCAAGACATACGCAAAATCAAGATTCACCCGACGACTTTGCAGTTGCACCACCCCCTTTGGAAGCTGGTGGGGGGGAAGCAGTGACAAGTTTCTTCAAAGCTCCCGTTTGAACTATGTTTGTTTGGTTGTCTGTTTCAGAGAGTACCCATTGTTTAATACATTGCAATCATGTACATTATAATTATTTTCTCGATATGCCTATCCATTCCAGGAAATTTAGGGAACTTATCTGCACTTTTCATTCCTAAACATACATTTATTTGTAGGTGGAATCACTCACTAACCAGGAAGAAGTTGAATTACGTACAAAGATCGAAGCCCTTGGTCTTGAAGTTACGAAAGTACCCTCAAAGTCCTTAAAGCAGCTTGATGAAGTCAGTCTGGTTATCATTATACATTCACTGCATTTATCTTTGCCCAATTGCAAACACTTTCTTTGAAGAGATTGATTTTTATGTCTATTTTTTTGCGTTCTTATCAGTTGGAAATTGCCAAGGAGTTGGATAAGCTATCTGAAAAGCTAGATGATGTGGATGAAATGATTTCTTCAGCAATGGCTGCAGACCCACAGGTGCAGTCTCTGTTGAGTGATACTGCTGATATTTGGATGCCTGTGATAACTGCTTCCGCTGATGAACGACGAAAATTCACAGCTTCTGTTGGAGAAAATTCAGAAACAGAAGAGAATTGTGGCAGTTAGATATATATATTTAATTTTTTGCTTATTTATTTAAGGAATAAGTATAGTAATTTCATTGCTATATCACAATTTTGTTATATTTGACAAAGAATATGTCTTTACGCCAGCATTTACATTGGTTGGAATGTACTGTTTCCACTGGATAATTTATTGTGCCATCTTGTCTGCAGTAATCCTTCATAATTCTCTAGAGATTGAAGTTACGAAGCCTTTTTATTGACGTAAAGTAACATCAAGCATGCTAATTGTTTATCTTTTTTTATTAATTTTTTGCTTGAATGAAATTATGTTTACAGGGTCGAAAATAAGTTTTTAATACTCTGCACCCAAAACTTTAATATCGAAACTTTGTTTCTTCATGAAAATAAGTTTTTAATACTTTGCACCCAAAACTTTAATATCGAAACTTGTTTAGTTTCTTCATGAA

mRNA sequence

AATGTGTATTCCGTAGTTCATGCAAACGAGAGAGCGTGTCACATCGGCAACAATAATCGCCGATCCATCGTCAAAGGGATCAGATTGGTCGTCGTTCGTTCTACAAGTACCGAAATCCCGAAACATCACTCAGTAAATTCCGAAGCCGATCACAGAAAAACATGGATCAGGAAGGGAAGGCAGACGAGCAACTGTTCAACCTTCTTGCCAGTCTTCTCCACCAGGTGGAATCACTCACTAACCAGGAAGAAGTTGAATTACGTACAAAGATCGAAGCCCTTGGTCTTGAAGTTACGAAAGTACCCTCAAAGTCCTTAAAGCAGCTTGATGAAGTCAGTCTGTTGGAAATTGCCAAGGAGTTGGATAAGCTATCTGAAAAGCTAGATGATGTGGATGAAATGATTTCTTCAGCAATGGCTGCAGACCCACAGGTGCAGTCTCTGTTGAGTGATACTGCTGATATTTGGATGCCTGTGATAACTGCTTCCGCTGATGAACGACGAAAATTCACAGCTTCTGTTGGAGAAAATTCAGAAACAGAAGAGAATTGTGGCAGTTAGATATATATATTTAATTTTTTGCTTATTTATTTAAGGAATAAGTATAGTAATTTCATTGCTATATCACAATTTTGTTATATTTGACAAAGAATATGTCTTTACGCCAGCATTTACATTGGTTGGAATGTACTGTTTCCACTGGATAATTTATTGTGCCATCTTGTCTGCAGTAATCCTTCATAATTCTCTAGAGATTGAAGTTACGAAGCCTTTTTATTGACGTAAAGTAACATCAAGCATGCTAATTGTTTATCTTTTTTTATTAATTTTTTGCTTGAATGAAATTATGTTTACAGGGTCGAAAATAAGTTTTTAATACTCTGCACCCAAAACTTTAATATCGAAACTTTGTTTCTTCATGAAAATAAGTTTTTAATACTTTGCACCCAAAACTTTAATATCGAAACTTGTTTAGTTTCTTCATGAA

Coding sequence (CDS)

ATGGATCAGGAAGGGAAGGCAGACGAGCAACTGTTCAACCTTCTTGCCAGTCTTCTCCACCAGGTGGAATCACTCACTAACCAGGAAGAAGTTGAATTACGTACAAAGATCGAAGCCCTTGGTCTTGAAGTTACGAAAGTACCCTCAAAGTCCTTAAAGCAGCTTGATGAAGTCAGTCTGTTGGAAATTGCCAAGGAGTTGGATAAGCTATCTGAAAAGCTAGATGATGTGGATGAAATGATTTCTTCAGCAATGGCTGCAGACCCACAGGTGCAGTCTCTGTTGAGTGATACTGCTGATATTTGGATGCCTGTGATAACTGCTTCCGCTGATGAACGACGAAAATTCACAGCTTCTGTTGGAGAAAATTCAGAAACAGAAGAGAATTGTGGCAGTTAG

Protein sequence

MDQEGKADEQLFNLLASLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDEVSLLEIAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSDTADIWMPVITASADERRKFTASVGENSETEENCGS

Homology

[Close]

BLAST of Carg18706-RA vs. NCBI nr
Match: XP_022953424.1 (uncharacterized protein LOC111455983 [Cucurbita moschata] >XP_023547946.1 uncharacterized protein LOC111806741 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 232.6 bits (592), Expect = 7.5e-58
Identity = 129/132 (97.73%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MDQEGKADEQLFNLLASLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDEVSL 60
           MDQEGKADEQLFNLLASLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE   
Sbjct: 1   MDQEGKADEQLFNLLASLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE--- 60

Query: 61  LEIAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSDTADIWMPVITASADERRKFTASV 120
           LEIAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSDTADIWMPVITASADERRKFTASV
Sbjct: 61  LEIAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSDTADIWMPVITASADERRKFTASV 120

Query: 121 GENSETEENCGS 133
           GENSETEENCGS
Sbjct: 121 GENSETEENCGS 129

[Close]

BLAST of Carg18706-RA vs. NCBI nr
Match: XP_022991943.1 (uncharacterized protein LOC111488434 [Cucurbita maxima])

HSP 1 Score: 230.3 bits (586), Expect = 3.7e-57
Identity = 127/131 (96.95%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 1   MDQEGKADEQLFNLLASLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDEVSL 60
           MDQEGKADEQLFNLLASLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE   
Sbjct: 1   MDQEGKADEQLFNLLASLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE--- 60

Query: 61  LEIAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSDTADIWMPVITASADERRKFTASV 120
           LEI+KELDKLSEKLDDVDEMISSAMAADPQVQSLLSDTADIWMPVITASADERRKFTASV
Sbjct: 61  LEISKELDKLSEKLDDVDEMISSAMAADPQVQSLLSDTADIWMPVITASADERRKFTASV 120

Query: 121 GENSETEENCG 132
           GENSETEENCG
Sbjct: 121 GENSETEENCG 128

[Close]

BLAST of Carg18706-RA vs. NCBI nr
Match: XP_004135903.1 (PREDICTED: uncharacterized protein LOC101220647 [Cucumis sativus] >KGN45171.1 hypothetical protein Csa_7G429570 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 6.1e-52
Identity = 120/132 (90.91%), Postives = 122/132 (92.42%), Query Frame = 0


Query: 1   MDQEGKADEQLFNLLASLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDEVSL 60
           M  EGKADEQLF LLA+LLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE   
Sbjct: 1   MAHEGKADEQLFQLLANLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE--- 60

Query: 61  LEIAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSDTADIWMPVITASADERRKFTASV 120
           LEIAKELDKLSEKLD+VDEMISSAMAADPQVQSLLSDTADIWMPVITASADERR FT SV
Sbjct: 61  LEIAKELDKLSEKLDNVDEMISSAMAADPQVQSLLSDTADIWMPVITASADERRNFTPSV 120

Query: 121 GENSETEENCGS 133
           GENSETE NC S
Sbjct: 121 GENSETEANCES 129

[Close]

BLAST of Carg18706-RA vs. NCBI nr
Match: XP_008461245.1 (PREDICTED: uncharacterized protein LOC103499886 [Cucumis melo])

HSP 1 Score: 208.8 bits (530), Expect = 1.2e-50
Identity = 118/132 (89.39%), Postives = 121/132 (91.67%), Query Frame = 0


Query: 1   MDQEGKADEQLFNLLASLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDEVSL 60
           M  EGKADEQLF LLA LLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE   
Sbjct: 1   MAHEGKADEQLFQLLAGLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE--- 60

Query: 61  LEIAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSDTADIWMPVITASADERRKFTASV 120
           LEIAKELDKLSEKLD+VDEMISSAMA+DPQVQSLLSDTADIWMPVITASADERR FT+SV
Sbjct: 61  LEIAKELDKLSEKLDNVDEMISSAMASDPQVQSLLSDTADIWMPVITASADERRNFTSSV 120

Query: 121 GENSETEENCGS 133
           GEN ETE N GS
Sbjct: 121 GENPETEANRGS 129

[Close]

BLAST of Carg18706-RA vs. NCBI nr
Match: XP_023004866.1 (uncharacterized protein LOC111498046 [Cucurbita maxima])

HSP 1 Score: 206.8 bits (525), Expect = 4.4e-50
Identity = 115/132 (87.12%), Postives = 121/132 (91.67%), Query Frame = 0


Query: 1   MDQEGKADEQLFNLLASLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDEVSL 60
           M ++ KADEQLF LLASLLHQVESLTNQEEVELR KIEALGLEVTKVPSKSLKQLDE   
Sbjct: 1   MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDE--- 60

Query: 61  LEIAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSDTADIWMPVITASADERRKFTASV 120
           +E+AKELDKLSEKLDDVDEMISSAMAADPQVQSLLS TADIWMPVITAS D+RRKFTAS 
Sbjct: 61  MELAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASA 120

Query: 121 GENSETEENCGS 133
           GENSETE+NC S
Sbjct: 121 GENSETEKNCAS 129

[Close]

BLAST of Carg18706-RA vs. TAIR10
Match: AT2G44360.1 (unknown protein)

HSP 1 Score: 165.2 bits (417), Expect = 2.7e-41
Identity = 92/122 (75.41%), Postives = 105/122 (86.07%), Query Frame = 0


Query: 4   EGKADEQLFNLLASLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDEVSLLEI 63
           EGK DEQLF LL+ LL QVESLTN EEVELR+KIEALGLEVTKVPSKS + L+EV   EI
Sbjct: 3   EGKPDEQLFQLLSGLLQQVESLTNTEEVELRSKIEALGLEVTKVPSKSAQHLNEV---EI 62

Query: 64  AKELDKLSEKLDDVDEMISSAMAADPQVQSLLSDTADIWMPVITASADERRKFTASVGEN 123
           AKELDKLS KLDDVDEMISSA+A+DPQVQ+LLS TAD+WMPVITA A+ER  FTAS+ ++
Sbjct: 63  AKELDKLSAKLDDVDEMISSAIASDPQVQTLLSGTADVWMPVITAGAEERLNFTASLADD 121

Query: 124 SE 126
            +
Sbjct: 123 DD 121

[Close]

BLAST of Carg18706-RA vs. TrEMBL
Match: tr|A0A0A0KBJ8|A0A0A0KBJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G429570 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 4.1e-52
Identity = 120/132 (90.91%), Postives = 122/132 (92.42%), Query Frame = 0


Query: 1   MDQEGKADEQLFNLLASLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDEVSL 60
           M  EGKADEQLF LLA+LLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE   
Sbjct: 1   MAHEGKADEQLFQLLANLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE--- 60

Query: 61  LEIAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSDTADIWMPVITASADERRKFTASV 120
           LEIAKELDKLSEKLD+VDEMISSAMAADPQVQSLLSDTADIWMPVITASADERR FT SV
Sbjct: 61  LEIAKELDKLSEKLDNVDEMISSAMAADPQVQSLLSDTADIWMPVITASADERRNFTPSV 120

Query: 121 GENSETEENCGS 133
           GENSETE NC S
Sbjct: 121 GENSETEANCES 129

[Close]

BLAST of Carg18706-RA vs. TrEMBL
Match: tr|A0A1S3CEA0|A0A1S3CEA0_CUCME (uncharacterized protein LOC103499886 OS=Cucumis melo OX=3656 GN=LOC103499886 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 7.7e-51
Identity = 118/132 (89.39%), Postives = 121/132 (91.67%), Query Frame = 0


Query: 1   MDQEGKADEQLFNLLASLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDEVSL 60
           M  EGKADEQLF LLA LLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE   
Sbjct: 1   MAHEGKADEQLFQLLAGLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE--- 60

Query: 61  LEIAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSDTADIWMPVITASADERRKFTASV 120
           LEIAKELDKLSEKLD+VDEMISSAMA+DPQVQSLLSDTADIWMPVITASADERR FT+SV
Sbjct: 61  LEIAKELDKLSEKLDNVDEMISSAMASDPQVQSLLSDTADIWMPVITASADERRNFTSSV 120

Query: 121 GENSETEENCGS 133
           GEN ETE N GS
Sbjct: 121 GENPETEANRGS 129

[Close]

BLAST of Carg18706-RA vs. TrEMBL
Match: tr|A0A2P5E6J0|A0A2P5E6J0_9ROSA (Ecotropic viral integration site protein OS=Trema orientalis OX=63057 GN=TorRG33x02_230450 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.3e-42
Identity = 101/132 (76.52%), Postives = 115/132 (87.12%), Query Frame = 0


Query: 1   MDQEGKADEQLFNLLASLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDEVSL 60
           M +EGKADEQLF LL+ LLHQVE+LTNQEEVELR+KIEALGLEVTKVPSKS + LDE   
Sbjct: 1   MAEEGKADEQLFQLLSGLLHQVETLTNQEEVELRSKIEALGLEVTKVPSKSTQLLDE--- 60

Query: 61  LEIAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSDTADIWMPVITASADERRKFTASV 120
           LEIAKELDKLS KLDDVDEMISSAMA+DPQVQSLLS TAD+WMPVITA+ADERR FT+S+
Sbjct: 61  LEIAKELDKLSAKLDDVDEMISSAMASDPQVQSLLSGTADVWMPVITATADERRNFTSSI 120

Query: 121 GENSETEENCGS 133
            +++   +  GS
Sbjct: 121 ADDNPNAQAKGS 129

[Close]

BLAST of Carg18706-RA vs. TrEMBL
Match: tr|A0A2P5D7B1|A0A2P5D7B1_PARAD (Ecotropic viral integration site protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_089160 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.2e-42
Identity = 100/132 (75.76%), Postives = 115/132 (87.12%), Query Frame = 0


Query: 1   MDQEGKADEQLFNLLASLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDEVSL 60
           M +EGKADEQLF LL+ LLHQVE+LTNQEEVELR+KIEALGLEVTKVPSKS + LDE   
Sbjct: 1   MAEEGKADEQLFQLLSGLLHQVETLTNQEEVELRSKIEALGLEVTKVPSKSTQHLDE--- 60

Query: 61  LEIAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSDTADIWMPVITASADERRKFTASV 120
           LEIAKELDKLS KLDDVDEMISSAMA+DPQVQSLLS TAD+W+PVITA+ADERR FT+S+
Sbjct: 61  LEIAKELDKLSAKLDDVDEMISSAMASDPQVQSLLSGTADVWVPVITATADERRNFTSSI 120

Query: 121 GENSETEENCGS 133
            +++   +  GS
Sbjct: 121 ADDNPNAQAKGS 129

[Close]

BLAST of Carg18706-RA vs. TrEMBL
Match: tr|B9REL4|B9REL4_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1773720 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.4e-41
Identity = 99/126 (78.57%), Postives = 112/126 (88.89%), Query Frame = 0


Query: 3   QEGKADEQLFNLLASLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDEVSLLE 62
           +EGKAD QLF LL++LL QVESLTNQEEVELR+KIEALGLEVTKVPSK  K LDE   LE
Sbjct: 4   EEGKADAQLFQLLSNLLQQVESLTNQEEVELRSKIEALGLEVTKVPSKLTKNLDE---LE 63

Query: 63  IAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSDTADIWMPVITASADERRKFTASVGE 122
           IA++LDKLS KLDDVDEMISSAMAADPQVQSLLS TAD+WMPVITA+ADERR FTAS+G+
Sbjct: 64  IARQLDKLSAKLDDVDEMISSAMAADPQVQSLLSGTADVWMPVITATADERRNFTASIGD 123

Query: 123 NSETEE 129
           ++  E+
Sbjct: 124 DTFEEK 126

The following BLAST results are available for this feature:

BLAST of Carg18706-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953424.1	7.5e-58	97.73	uncharacterized protein LOC111455983 [Cucurbita moschata] >XP_023547946.1 unchar...	[more]
XP_022991943.1	3.7e-57	96.95	uncharacterized protein LOC111488434 [Cucurbita maxima]	[more]
XP_004135903.1	6.1e-52	90.91	PREDICTED: uncharacterized protein LOC101220647 [Cucumis sativus] >KGN45171.1 hy...	[more]
XP_008461245.1	1.2e-50	89.39	PREDICTED: uncharacterized protein LOC103499886 [Cucumis melo]	[more]
XP_023004866.1	4.4e-50	87.12	uncharacterized protein LOC111498046 [Cucurbita maxima]	[more]

BLAST of Carg18706-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44360.1	2.7e-41	75.41	unknown protein	[more]

BLAST of Carg18706-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18706-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KBJ8\|A0A0A0KBJ8_CUCSA	4.1e-52	90.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G429570 PE=4 SV=1	[more]
tr\|A0A1S3CEA0\|A0A1S3CEA0_CUCME	7.7e-51	89.39	uncharacterized protein LOC103499886 OS=Cucumis melo OX=3656 GN=LOC103499886 PE=...	[more]
tr\|A0A2P5E6J0\|A0A2P5E6J0_9ROSA	1.3e-42	76.52	Ecotropic viral integration site protein OS=Trema orientalis OX=63057 GN=TorRG33...	[more]
tr\|A0A2P5D7B1\|A0A2P5D7B1_PARAD	2.2e-42	75.76	Ecotropic viral integration site protein OS=Parasponia andersonii OX=3476 GN=Pan...	[more]
tr\|B9REL4\|B9REL4_RICCO	1.4e-41	78.57	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1773720 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg18706	Carg18706	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg18706-RA	Carg18706-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg18706-RA.exon.1	Carg18706-RA.exon.1	exon
Carg18706-RA.exon.2	Carg18706-RA.exon.2	exon
Carg18706-RA.exon.3	Carg18706-RA.exon.3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg18706-RA.five_prime_UTR.1	Carg18706-RA.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg18706-RA.CDS.1	Carg18706-RA.CDS.1	CDS
Carg18706-RA.CDS.2	Carg18706-RA.CDS.2	CDS
Carg18706-RA.CDS.3	Carg18706-RA.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg18706-RA.three_prime_UTR.1	Carg18706-RA.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 60..87
None	No IPR available	PANTHER	PTHR37727	FAMILY NOT NAMED	coord: 1..129