Carg18421-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18421-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	F-box family protein, putative
Location	Cucurbita_argyrosperma_scaffold_161 : 155858 .. 157009 (-)
Sequence length	1152

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAATTCTACCCCAGAATTTGACTGTTTCTTTAGTCCTATATAAAACCTCTCAATCCTTCTCTCCATTCTACAAAGCTTTGATCAAAATCATGCCTCCTCCTTATTCCTCTCATCATCCTCCCTCCGCCGCGGACGACGACGGCGACGCCATTGTCGCTCTCCACTCCGACATCCTTCAGACTCATATTCTCACCCGTCTTGATGGCGCGGCTCTGACCTCTGCCGCCTCCGCGTCTTCCCGCTTCCGCCGCCTCTCCAGCGAGGACCTGCTCTGGCGCCGGGTTTGCTCAACCTCCTGGCCGTCAACCACTCATCCGCGAGTCCAGCAGGCCATTTCCGCCTTCCCTTCCGAACACCGATCCTTCTTCTCTGACGTTTTTCCGGTGCTCGATTGCCGATCGCTACGGTGTGACCTGAACCGTTCCTCTTGCTCCTCCACCTCTGAATTGATCTCTGCCGTCGACATTCATTACAAGGACAAACTCCTGTTCTCGAAAGTTCACTCAATCGAGACGAAGACGAATTGGTTCCTCGGCTCTCCATTTCGTGTTGACCTAATCGACCCGAAGGATTCGATTCCGTCGCCAATTAGACGCACGGAGAAATACGAAGATTGGCTAGGGCATCTAGAGGAGAATCTAACAGTGAGTTGGATAGTAATCGATCCGATTAAGAATCGAGCGGCGAACGTCTCGAGTAGGCAGGCAGTGAAAGCGCGATGGCAGTGGTTGTCCGGCGACATAGAGGTGGAATACACGACGGTGATGGGCGGCGACGGGAGGATAGGGTCGGCAGAGGAGATGGTGGAATGTGCGGTGGTGGTGAGTTGCGGGGAGAAGGAGGAGGAGAAGGGGATGGAGATGAGCGTAAGGGAGGTGAGTATGCGGATGTTGGACATGGAAGGGAAGCATTTGAAGGGGAAGGAGAGTATGAAGATTTTGGGGGAAGCCATGGAAAGGGGGAAGAGAATAAGGGGGAAGAAATGGGAAGGGAAATTGAGGTTCAGAGAATACGAAGAGCGGAGGAGGTTGAGGAAGGCCAGAAAGGAGAGGACTGAGAATGCTTTGGATATGCTCTGTATTTTTACTGGAATCGCCATTCTCTTCTCTTTCTGCTCTTTCTTCCTCTTCCTCTTCCTCTCCACGTAG

mRNA sequence

ATGTCAATTCTACCCCAGAATTTGACTGTTTCTTTAGTCCTATATAAAACCTCTCAATCCTTCTCTCCATTCTACAAAGCTTTGATCAAAATCATGCCTCCTCCTTATTCCTCTCATCATCCTCCCTCCGCCGCGGACGACGACGGCGACGCCATTGTCGCTCTCCACTCCGACATCCTTCAGACTCATATTCTCACCCGTCTTGATGGCGCGGCTCTGACCTCTGCCGCCTCCGCGTCTTCCCGCTTCCGCCGCCTCTCCAGCGAGGACCTGCTCTGGCGCCGGGTTTGCTCAACCTCCTGGCCGTCAACCACTCATCCGCGAGTCCAGCAGGCCATTTCCGCCTTCCCTTCCGAACACCGATCCTTCTTCTCTGACGTTTTTCCGGTGCTCGATTGCCGATCGCTACGGTGTGACCTGAACCGTTCCTCTTGCTCCTCCACCTCTGAATTGATCTCTGCCGTCGACATTCATTACAAGGACAAACTCCTGTTCTCGAAAGTTCACTCAATCGAGACGAAGACGAATTGGTTCCTCGGCTCTCCATTTCGTGTTGACCTAATCGACCCGAAGGATTCGATTCCGTCGCCAATTAGACGCACGGAGAAATACGAAGATTGGCTAGGGCATCTAGAGGAGAATCTAACAGTGAGTTGGATAGTAATCGATCCGATTAAGAATCGAGCGGCGAACGTCTCGAGTAGGCAGGCAGTGAAAGCGCGATGGCAGTGGTTGTCCGGCGACATAGAGGTGGAATACACGACGGTGATGGGCGGCGACGGGAGGATAGGGTCGGCAGAGGAGATGGTGGAATGTGCGGTGGTGGTGAGTTGCGGGGAGAAGGAGGAGGAGAAGGGGATGGAGATGAGCGTAAGGGAGGTGAGTATGCGGATGTTGGACATGGAAGGGAAGCATTTGAAGGGGAAGGAGAGTATGAAGATTTTGGGGGAAGCCATGGAAAGGGGGAAGAGAATAAGGGGGAAGAAATGGGAAGGGAAATTGAGGTTCAGAGAATACGAAGAGCGGAGGAGGTTGAGGAAGGCCAGAAAGGAGAGGACTGAGAATGCTTTGGATATGCTCTGTATTTTTACTGGAATCGCCATTCTCTTCTCTTTCTGCTCTTTCTTCCTCTTCCTCTTCCTCTCCACGTAG

Coding sequence (CDS)

ATGTCAATTCTACCCCAGAATTTGACTGTTTCTTTAGTCCTATATAAAACCTCTCAATCCTTCTCTCCATTCTACAAAGCTTTGATCAAAATCATGCCTCCTCCTTATTCCTCTCATCATCCTCCCTCCGCCGCGGACGACGACGGCGACGCCATTGTCGCTCTCCACTCCGACATCCTTCAGACTCATATTCTCACCCGTCTTGATGGCGCGGCTCTGACCTCTGCCGCCTCCGCGTCTTCCCGCTTCCGCCGCCTCTCCAGCGAGGACCTGCTCTGGCGCCGGGTTTGCTCAACCTCCTGGCCGTCAACCACTCATCCGCGAGTCCAGCAGGCCATTTCCGCCTTCCCTTCCGAACACCGATCCTTCTTCTCTGACGTTTTTCCGGTGCTCGATTGCCGATCGCTACGGTGTGACCTGAACCGTTCCTCTTGCTCCTCCACCTCTGAATTGATCTCTGCCGTCGACATTCATTACAAGGACAAACTCCTGTTCTCGAAAGTTCACTCAATCGAGACGAAGACGAATTGGTTCCTCGGCTCTCCATTTCGTGTTGACCTAATCGACCCGAAGGATTCGATTCCGTCGCCAATTAGACGCACGGAGAAATACGAAGATTGGCTAGGGCATCTAGAGGAGAATCTAACAGTGAGTTGGATAGTAATCGATCCGATTAAGAATCGAGCGGCGAACGTCTCGAGTAGGCAGGCAGTGAAAGCGCGATGGCAGTGGTTGTCCGGCGACATAGAGGTGGAATACACGACGGTGATGGGCGGCGACGGGAGGATAGGGTCGGCAGAGGAGATGGTGGAATGTGCGGTGGTGGTGAGTTGCGGGGAGAAGGAGGAGGAGAAGGGGATGGAGATGAGCGTAAGGGAGGTGAGTATGCGGATGTTGGACATGGAAGGGAAGCATTTGAAGGGGAAGGAGAGTATGAAGATTTTGGGGGAAGCCATGGAAAGGGGGAAGAGAATAAGGGGGAAGAAATGGGAAGGGAAATTGAGGTTCAGAGAATACGAAGAGCGGAGGAGGTTGAGGAAGGCCAGAAAGGAGAGGACTGAGAATGCTTTGGATATGCTCTGTATTTTTACTGGAATCGCCATTCTCTTCTCTTTCTGCTCTTTCTTCCTCTTCCTCTTCCTCTCCACGTAG

Protein sequence

MSILPQNLTVSLVLYKTSQSFSPFYKALIKIMPPPYSSHHPPSAADDDGDAIVALHSDILQTHILTRLDGAALTSAASASSRFRRLSSEDLLWRRVCSTSWPSTTHPRVQQAISAFPSEHRSFFSDVFPVLDCRSLRCDLNRSSCSSTSELISAVDIHYKDKLLFSKVHSIETKTNWFLGSPFRVDLIDPKDSIPSPIRRTEKYEDWLGHLEENLTVSWIVIDPIKNRAANVSSRQAVKARWQWLSGDIEVEYTTVMGGDGRIGSAEEMVECAVVVSCGEKEEEKGMEMSVREVSMRMLDMEGKHLKGKESMKILGEAMERGKRIRGKKWEGKLRFREYEERRRLRKARKERTENALDMLCIFTGIAILFSFCSFFLFLFLST

Homology

[Close]

BLAST of Carg18421-RA vs. NCBI nr
Match: XP_022944112.1 (probable F-box protein At2g36090 [Cucurbita moschata])

HSP 1 Score: 674.1 bits (1738), Expect = 2.8e-190
Identity = 375/383 (97.91%), Postives = 377/383 (98.43%), Query Frame = 0


Query: 1   MSILPQNLTVSLVLYKTSQSFSPFYKALIKIMXXXXXXXXXXXXXXXXXXAIVALHSDIL 60
           M I PQNLTVSLVLYKTSQSFSPFY ALIKIMXXXXXXXXXXXXXXXXXXAIVALHSDIL
Sbjct: 1   MPIQPQNLTVSLVLYKTSQSFSPFYNALIKIMXXXXXXXXXXXXXXXXXXAIVALHSDIL 60

Query: 61  QTHILTRLDGAALTSAASASSRFRRLSSEDLLWRRVCSTSWPSTTHPRVQQAISAFPSEH 120
           QTHILTRLDGAALTSAASASSRFRRLS EDLLWRRVCSTSWPSTTHPRVQQAISAFPSEH
Sbjct: 61  QTHILTRLDGAALTSAASASSRFRRLSREDLLWRRVCSTSWPSTTHPRVQQAISAFPSEH 120

Query: 121 RSFFSDVFPVLDCRSLRCDLNRSSCSSTSELISAVDIHYKDKLLFSKVHSIETKTNWFLG 180
           RSFFSDVFPVLDCRSLRCDLNRSS SSTSELISAVDIHYKDKLLFSKV SIETKTNWFLG
Sbjct: 121 RSFFSDVFPVLDCRSLRCDLNRSSSSSTSELISAVDIHYKDKLLFSKVDSIETKTNWFLG 180

Query: 181 SPFRVDLIDPKDSIPSPIRRTEKYEDWLGHLEENLTVSWIVIDPIKNRAANVSSRQAVKA 240
           SPFRVDLIDPKDSIPSPIRRTEKYEDWLGHLEENLTVSWIVIDPIKNRAANVSSRQAVKA
Sbjct: 181 SPFRVDLIDPKDSIPSPIRRTEKYEDWLGHLEENLTVSWIVIDPIKNRAANVSSRQAVKA 240

Query: 241 RWQWLSGDIEVEYTTVMGGDGRIGSAEEMVECAVVVSCGEKEEEKGMEMSVREVSMRMLD 300
           RWQWLSGDIEVEYTTVMGGDGRIGSAEEMVECAVVVSCGEKEEE+GMEMSVREVSMRMLD
Sbjct: 241 RWQWLSGDIEVEYTTVMGGDGRIGSAEEMVECAVVVSCGEKEEEEGMEMSVREVSMRMLD 300

Query: 301 MEGKHLKGKESMKILGEAMERGKRIRGKKWEGKLRFREYEERRRLXXXXXERTENALDML 360
           MEGKHLKGKESM+ILGEAMERGKRIRGKKWEGKLRFREYEERRRLXXXXXERTENALDML
Sbjct: 301 MEGKHLKGKESMEILGEAMERGKRIRGKKWEGKLRFREYEERRRLXXXXXERTENALDML 360

Query: 361 CIFTGIAILFSFCSFFLFLFLST 384
           CIFTGIAILFSFCSFFLFLFLST
Sbjct: 361 CIFTGIAILFSFCSFFLFLFLST 383

[Close]

BLAST of Carg18421-RA vs. NCBI nr
Match: XP_023512160.1 (probable F-box protein At2g36090 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 669.1 bits (1725), Expect = 9.1e-189
Identity = 371/383 (96.87%), Postives = 376/383 (98.17%), Query Frame = 0


Query: 1   MSILPQNLTVSLVLYKTSQSFSPFYKALIKIMXXXXXXXXXXXXXXXXXXAIVALHSDIL 60
           M ILPQNLTV+LVLYKTSQSFSPFYKALIKIMXXXXXXXXXXXXXXXXXXAIVALHSDIL
Sbjct: 1   MPILPQNLTVTLVLYKTSQSFSPFYKALIKIMXXXXXXXXXXXXXXXXXXAIVALHSDIL 60

Query: 61  QTHILTRLDGAALTSAASASSRFRRLSSEDLLWRRVCSTSWPSTTHPRVQQAISAFPSEH 120
           QTHILTRLDGAAL SAASASSRFRRLSSED LWRRVCSTSWPSTTHPRVQQAI AFPSEH
Sbjct: 61  QTHILTRLDGAALISAASASSRFRRLSSEDQLWRRVCSTSWPSTTHPRVQQAIYAFPSEH 120

Query: 121 RSFFSDVFPVLDCRSLRCDLNRSSCSSTSELISAVDIHYKDKLLFSKVHSIETKTNWFLG 180
           RSFFSDVFPVLDCRSLRCDLNRSS SSTSELISAVDIHYKDKLLFSKVHSIETKTNWFLG
Sbjct: 121 RSFFSDVFPVLDCRSLRCDLNRSSSSSTSELISAVDIHYKDKLLFSKVHSIETKTNWFLG 180

Query: 181 SPFRVDLIDPKDSIPSPIRRTEKYEDWLGHLEENLTVSWIVIDPIKNRAANVSSRQAVKA 240
           SPFRVDLIDPKDSIPSPIRRTEKYEDWLGHLEENLTVSWIVIDPIKNRAAN+SSRQAVKA
Sbjct: 181 SPFRVDLIDPKDSIPSPIRRTEKYEDWLGHLEENLTVSWIVIDPIKNRAANISSRQAVKA 240

Query: 241 RWQWLSGDIEVEYTTVMGGDGRIGSAEEMVECAVVVSCGEKEEEKGMEMSVREVSMRMLD 300
           RWQWLSGDIEVEYTTVMGGDG IGSAEEMVECAVVVSCGEKEEE+GMEMSVREVSMRMLD
Sbjct: 241 RWQWLSGDIEVEYTTVMGGDGSIGSAEEMVECAVVVSCGEKEEEEGMEMSVREVSMRMLD 300

Query: 301 MEGKHLKGKESMKILGEAMERGKRIRGKKWEGKLRFREYEERRRLXXXXXERTENALDML 360
           MEGKHLKGKESM+ILGEAMERGKRIRG+KWEGKLRFREYEERRRLXXXXX RTENALDML
Sbjct: 301 MEGKHLKGKESMEILGEAMERGKRIRGEKWEGKLRFREYEERRRLXXXXXXRTENALDML 360

Query: 361 CIFTGIAILFSFCSFFLFLFLST 384
           CIFTGIAILFSFCSFFLFLFLST
Sbjct: 361 CIFTGIAILFSFCSFFLFLFLST 383

[Close]

BLAST of Carg18421-RA vs. NCBI nr
Match: XP_022986218.1 (probable F-box protein At2g36090 [Cucurbita maxima])

HSP 1 Score: 648.7 bits (1672), Expect = 1.3e-182
Identity = 367/390 (94.10%), Postives = 371/390 (95.13%), Query Frame = 0


Query: 1   MSILPQNLTVSLVLYKTSQSFSPFYKALIKIM------XXXXXXXXXXXXXXXXXXAIVA 60
           M  LPQNLTV+LVLYKTSQSF PFYKALIKIM      XXXXXXXXXXXXXXXXXXAIVA
Sbjct: 1   MPNLPQNLTVTLVLYKTSQSFPPFYKALIKIMXXXXXXXXXXXXXXXXXXXXXXXXAIVA 60

Query: 61  LHSDILQTHILTRLDGAALTSAASASSRFRRLSSEDLLWRRVCSTSWPSTTHPRVQQAIS 120
           LHSDILQTHILTRLDGAALTSAASASSRFRRLS ED LWRRVCSTSWPSTTHPRVQQAIS
Sbjct: 61  LHSDILQTHILTRLDGAALTSAASASSRFRRLSREDQLWRRVCSTSWPSTTHPRVQQAIS 120

Query: 121 AFPSEHRSFFSDVFPVLDCRSLRCDLNRSSCSSTSELISAVDIHYKDKLLFSKVHSIETK 180
           AFPSEHRSFFSDVFPVLDCRSLRCDLNRSS SSTSELISAVDIHYKDKLLFSKVHSIETK
Sbjct: 121 AFPSEHRSFFSDVFPVLDCRSLRCDLNRSSSSSTSELISAVDIHYKDKLLFSKVHSIETK 180

Query: 181 TNWFLGSPFRVDLIDPKDSIPSPIRRTEKYEDWLGHLEENLTVSWIVIDPIKNRAANVSS 240
           TNWFLGSPFRVDLIDPKDSIPSPIRRTEKYEDWLGHLEENLTVSWIVIDPIKNRAANVSS
Sbjct: 181 TNWFLGSPFRVDLIDPKDSIPSPIRRTEKYEDWLGHLEENLTVSWIVIDPIKNRAANVSS 240

Query: 241 RQAVKARWQWLSGDIEVEYTTVMGGDGRIGSAEEMVECAVVVSCGEK-EEEKGMEMSVRE 300
           RQ VKARWQWLSGDIEVEYTTVMGGDGRIGSAEEMVECAVVVSCGEK EEE+GM+MSVRE
Sbjct: 241 RQPVKARWQWLSGDIEVEYTTVMGGDGRIGSAEEMVECAVVVSCGEKEEEEEGMKMSVRE 300

Query: 301 VSMRMLDMEGKHLKGKESMKILGEAMERGKRIRGKKWEGKLRFREYEERRRLXXXXXERT 360
           VSMRMLDMEGKHLKGKESM+ILGEAMERGKRIRGKKWEGKLRFREYEERRR XXXXX  T
Sbjct: 301 VSMRMLDMEGKHLKGKESMEILGEAMERGKRIRGKKWEGKLRFREYEERRRXXXXXXXXT 360

Query: 361 ENALDMLCIFTGIAILFSFCSFFLFLFLST 384
           ENALD LCIFTGIAILFSFCSFF FLFLST
Sbjct: 361 ENALDTLCIFTGIAILFSFCSFFFFLFLST 390

[Close]

BLAST of Carg18421-RA vs. NCBI nr
Match: XP_011658460.1 (PREDICTED: probable F-box protein At1g60180 [Cucumis sativus])

HSP 1 Score: 487.3 bits (1253), Expect = 4.9e-134
Identity = 261/328 (79.57%), Postives = 282/328 (85.98%), Query Frame = 0


Query: 51  AIVALHSDILQTHILTRLDGAALTSAASASSRFRRLSSEDLLWRRVCSTSWPSTTHPRVQ 110
           AI ALHSDILQTHILTRLDGAALTS AS SSRFR LSSED LWRRVCSTSWPS THP++Q
Sbjct: 13  AIAALHSDILQTHILTRLDGAALTSTASTSSRFRSLSSEDQLWRRVCSTSWPSITHPKLQ 72

Query: 111 QAISAFPSEHRSFFSDVFPVLDCRSLRCDLNRSSCSSTSELISAVDIHYKDKLLFSKVHS 170
           Q ISAFPS+H+SFFSDVFPVLDC SLRCDL+    S+T ELISAVDIHYK+KLLFSKVHS
Sbjct: 73  QLISAFPSKHQSFFSDVFPVLDCCSLRCDLD-YRYSTTVELISAVDIHYKNKLLFSKVHS 132

Query: 171 IETKTNWFLGSPFRVDLIDPKDSIPSPIRRTEKYEDWLGHLEENLTVSWIVIDPIKNRAA 230
           IET+TNWFL SPFRVDLIDPKDSIPSPIRR+EKYEDWLGHLEENLTVSW++IDPIKNRAA
Sbjct: 133 IETETNWFLCSPFRVDLIDPKDSIPSPIRRSEKYEDWLGHLEENLTVSWVIIDPIKNRAA 192

Query: 231 NVSSRQAVKARWQWLSGDIEVEYTTVMGGDGRIGSAEEMVECAVVVSCGEKEEEKGMEMS 290
           N+SSRQ VK R  WLSG+I+V+YTTVMGGD R GSA EMVECAVVVSCGEKEEE GMEMS
Sbjct: 193 NISSRQPVKVRRHWLSGEIQVQYTTVMGGDRRAGSAVEMVECAVVVSCGEKEEE-GMEMS 252

Query: 291 VREVSMRMLDMEGKHLKGKESMKILGEAMERGKRIRGKKWEGKLRFREYEERRRLXXXXX 350
           V EVSM+MLDMEGKHL GK+S+ IL EAME+GKRI  KK +GKLR+ E       XXXXX
Sbjct: 253 VTEVSMQMLDMEGKHLNGKDSLGILKEAMEKGKRISAKKGDGKLRYEEXXXXXXXXXXXX 312

Query: 351 ERTENALDMLCIFTGIAILFSFCSFFLF 379
               N LDMLCIFTGIAIL SF SF  F
Sbjct: 313 XXXXNGLDMLCIFTGIAILLSFSSFIFF 338

[Close]

BLAST of Carg18421-RA vs. NCBI nr
Match: XP_022995112.1 (probable F-box protein At2g36090 [Cucurbita maxima])

HSP 1 Score: 483.0 bits (1242), Expect = 9.2e-133
Identity = 250/329 (75.99%), Postives = 278/329 (84.50%), Query Frame = 0


Query: 52  IVALHSDILQTHILTRLDGAALTSAASASSRFRRLSSEDLLWRRVCSTSWPSTTHPRVQQ 111
           I ALHSDILQTHILTRLDG AL SAASASSRFR LS+ED LWR++CS +WPSTTHPR+QQ
Sbjct: 11  IAALHSDILQTHILTRLDGPALASAASASSRFRHLSAEDQLWRQICSATWPSTTHPRIQQ 70

Query: 112 AISAFPSEHRSFFSDVFPVLDCRSLRCDLNRSSCSSTSELISAVDIHYKDKLLFSKVHSI 171
           AIS FPSEHRSFFSDVFP+LDCRSLRCDL+R   S +SELISAVDIHYKDK L SKVHS 
Sbjct: 71  AISVFPSEHRSFFSDVFPLLDCRSLRCDLDR---SPSSELISAVDIHYKDKPLLSKVHST 130

Query: 172 ETKTNWFLGSPFRVDLIDPKDSIPSPIRRTEKYEDWLGHLEENLTVSWIVIDPIKNRAAN 231
           ET TNWFL SPFRVD+IDPKDSIP PIRR EK EDW+ +LE+NLT SWIVIDPIKNRAAN
Sbjct: 131 ETHTNWFLYSPFRVDVIDPKDSIPLPIRRREKREDWVANLEQNLTASWIVIDPIKNRAAN 190

Query: 232 VSSRQAVKARWQWLSGDIEVEYTTVMGGDGRIGSAEEMVECAVVVSCGEKEEEKGMEMSV 291
           VSSRQAV  R  WLSG+I+V+YTT+MGGD R GS  EMV+C+VVV CGEKEE+ GMEMSV
Sbjct: 191 VSSRQAVNVRRHWLSGEIQVQYTTMMGGDRRAGSRTEMVQCSVVVICGEKEED-GMEMSV 250

Query: 292 REVSMRMLDMEGKHLKGKESMKILGEAMERGKRIRGKKWEGKLRFREYEERRRLXXXXXE 351
           REVSM++LDMEGKHL GKES  ILGEAME GKRI+ +K E KLRF EYEE +       +
Sbjct: 251 REVSMQILDMEGKHLNGKESSGILGEAMESGKRIKEQKGEAKLRFGEYEELKWKRKGRKD 310

Query: 352 RTENALDMLCIFTGIAILFSFCSFFLFLF 381
           R ENALDMLC+FTGIAI  SFC+FF+F F
Sbjct: 311 RIENALDMLCVFTGIAIFLSFCTFFIFFF 335

[Close]

BLAST of Carg18421-RA vs. TAIR10
Match: AT2G27310.1 (F-box family protein)

HSP 1 Score: 237.3 bits (604), Expect = 1.6e-62
Identity = 143/339 (42.18%), Postives = 208/339 (61.36%), Query Frame = 0


Query: 51  AIVALHSDILQTHILTRLDGAALTSAASASSRFRRLSSEDLLWRRVCSTSWPSTTHPRVQ 110
           +I  LHSDI+QT ILTRLDG  L S A+ SS  + L +E+ LW+ +   +WPS   PRV 
Sbjct: 11  SISTLHSDIIQTQILTRLDGPTLASTATTSSYLQTLCTEEKLWQELSIDTWPSINDPRVV 70

Query: 111 QAISAFPSEHRSFFSDVFPVLDCRSLRCDLNRSSCSSTSELISAVDIHYKDKLLFSKVHS 170
           QAIS+FPS +RSFF+D +P  +                + LISAVD++Y+ ++++SKV  
Sbjct: 71  QAISSFPSGYRSFFADSYPFTE-----HTWQSEKHDPPTGLISAVDLYYRGEIIYSKVQE 130

Query: 171 IET---KTNWFLGSPFRVDLIDPKDSIPSPIRRT-EKYEDWLGHLEENLTVSWIVIDPIK 230
           +ET   K+ WFL SPFRVD++DPK+S+ + IR     YE W+  +EE++ ++WI+IDPIK
Sbjct: 131 METEKGKSGWFLSSPFRVDILDPKESVQTRIRYPGGDYEAWVKDMEESMKLNWILIDPIK 190

Query: 231 NRAANVSSRQAVKARWQWLSGDIEVEYTTVMGGDGRIGSAEEMVECAVVVSCG------E 290
            RAAN+SSR+AV AR  WL+GD+E+ ++TV+          E  E A VVSCG      E
Sbjct: 191 KRAANISSRKAVSARRNWLTGDLEIRFSTVV--------TAEAAEVAAVVSCGSAEAWKE 250

Query: 291 KEEEKGMEMSVREVSMRMLDMEGKHLKGKESMKILGEAMERGKRI--RGKKWEGKLRFRE 350
            +EE G E+ VR+V +++ D+EGK +KG++S+ IL + +  GKR     ++   K R+ E
Sbjct: 251 VDEEVGGEIHVRDVRLQVEDIEGKCMKGRDSLVIL-QGLLDGKRSCKDDEERRAKERYEE 310

Query: 351 YEERRRLXXXXXERTENALDMLCIFTGIAILFSFCSFFL 378
           Y   +       ER E A D +C+  G ++     SF L
Sbjct: 311 YVRMKIQWRENKERREKAQDTICMIFGFSMFVLLWSFIL 335

[Close]

BLAST of Carg18421-RA vs. TAIR10
Match: AT3G44326.1 (F-box family protein)

HSP 1 Score: 227.3 bits (578), Expect = 1.7e-59
Identity = 135/333 (40.54%), Postives = 203/333 (60.96%), Query Frame = 0


Query: 52  IVALHSDILQTHILTRLDGAALTSAASASSRFRRLSSEDLLWRRVCSTSWPSTTHPRVQQ 111
           I A+ SD+L+++ILTRLDG++L + +   S      S++ LWR+ CS +WPST+  RVQ 
Sbjct: 21  INAVSSDVLRSNILTRLDGSSLAALSCTCSNLNSFCSDESLWRQQCSATWPSTSDTRVQS 80

Query: 112 AISAFPSEHRSFFSDVFPVLDCRSLRCDLNRSSCSSTSELISAVDIHYKDKLLFSKVHSI 171
            IS FP  HR+FFSD FP L+       +N      TSELISAVDI YKD ++FS+VH  
Sbjct: 81  IISTFPDGHRTFFSDSFPFLE---HDVGINLPPSVDTSELISAVDIFYKDDVIFSRVHVT 140

Query: 172 ETKTNWFLGSPFRVDLIDPKDSIPSPIRRTEKYED--WLGHLEENLTVSWIVIDPIKNRA 231
           ET + WFL SP RVDL++PK+ IP+ +  T++ +D  W   LEENL++SWI+IDP   RA
Sbjct: 141 ETVSGWFLCSPMRVDLVEPKELIPTRVLVTDQCKDDTWKSDLEENLSLSWILIDPTCKRA 200

Query: 232 ANVSSRQAVKARWQWLSGDIEVEYTTVMGGDGRIGSAEEMVECAVVVSCGEKEEEKGMEM 291
           A+VS+R+ V     WL+G++ V+++++     +  S +      VV++   + EE+   M
Sbjct: 201 ADVSTRKPVSVHRHWLTGEVHVKFSSIFVVGNKKRSEQVEFTVTVVLAVFNRREEETAVM 260

Query: 292 SVREVSMRMLDMEGKHLKGKESMKILGEAMERGKRIR-GKKWEGKLRFREYEERRRLXXX 351
            +REVS+   D +G++L GK S++IL  AM   +R R G + EGK ++ EY ER+     
Sbjct: 261 QIREVSLVAEDKDGRNLGGKVSLEILVAAMGMKRRFRAGGEEEGKEKYIEYMERKTAKAE 320

Query: 352 XXER--TENALDMLCIFTGIAILFSFCSFFLFL 380
              R   E A++    +  + +L     F+LF+
Sbjct: 321 MKWRRGKETAMETAACWIAVLLLGFLLCFYLFM 350

[Close]

BLAST of Carg18421-RA vs. TAIR10
Match: AT2G36090.1 (F-box family protein)

HSP 1 Score: 226.9 bits (577), Expect = 2.2e-59
Identity = 124/281 (44.13%), Postives = 177/281 (62.99%), Query Frame = 0


Query: 52  IVALHSDILQTHILTRLDGAALTSAASASSRFRRLSSEDLLWRRVCSTSWPSTTHPRVQQ 111
           I  +H DI+++HILTRLDGA L S + ASS    L+S ++LW ++C ++WPS +      
Sbjct: 17  ISTVHDDIIESHILTRLDGATLASVSCASSHLHHLASNEILWSKICRSTWPSCS------ 76

Query: 112 AISAFPSEHRSFFSDVFPVLDCRSLRCDLNRSSCSSTSELISAVDIHYKDKLLFSKVHSI 171
                    RSFFSD + +++      DL+R       ELISAVD+HY+ KL+FS+V   
Sbjct: 77  ------GGSRSFFSDAYSMVETAGTVSDLDR----PFPELISAVDLHYRGKLIFSRVVKT 136

Query: 172 ETKTNWFLGSPFRVDLIDPKDSIPSPIRRTEKYEDWLGHLEENLTVSWIVIDPIKNRAAN 231
           ET T WF  SP R+DL+D KD++ +PI+R ++ ED    LE++LT+SWIVIDPI  RAAN
Sbjct: 137 ETTTAWFKSSPLRIDLVDTKDTVATPIKRRQRTEDTCRDLEKDLTLSWIVIDPIGKRAAN 196

Query: 232 VSSRQAVKARWQWLSGDIEVEYTTVMGGDGRIGSAEEMVECAV-VVSCGEKEEEKGMEMS 291
           +SS + V  +  W+SG++E ++ TV+G           VEC + VV+CGE+      EM 
Sbjct: 197 ISSHRPVSVQRNWISGEVEAQFATVVGA----------VECVITVVTCGEE------EMH 256

Query: 292 VREVSMRMLDMEGKHLKGKESMKILGEAMERGKRIRGKKWE 332
           VREVS+++  MEG HL G++S+ IL   ME GKR+ G + E
Sbjct: 257 VREVSLKVEKMEGTHLNGRDSLVILRSVME-GKRVNGSRRE 264

[Close]

BLAST of Carg18421-RA vs. Swiss-Prot
Match: sp|Q9XIN8|FB119_ARATH (F-box protein At2g27310 OS=Arabidopsis thaliana OX=3702 GN=At2g27310 PE=2 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 2.9e-61
Identity = 143/339 (42.18%), Postives = 208/339 (61.36%), Query Frame = 0


Query: 51  AIVALHSDILQTHILTRLDGAALTSAASASSRFRRLSSEDLLWRRVCSTSWPSTTHPRVQ 110
           +I  LHSDI+QT ILTRLDG  L S A+ SS  + L +E+ LW+ +   +WPS   PRV 
Sbjct: 11  SISTLHSDIIQTQILTRLDGPTLASTATTSSYLQTLCTEEKLWQELSIDTWPSINDPRVV 70

Query: 111 QAISAFPSEHRSFFSDVFPVLDCRSLRCDLNRSSCSSTSELISAVDIHYKDKLLFSKVHS 170
           QAIS+FPS +RSFF+D +P  +                + LISAVD++Y+ ++++SKV  
Sbjct: 71  QAISSFPSGYRSFFADSYPFTE-----HTWQSEKHDPPTGLISAVDLYYRGEIIYSKVQE 130

Query: 171 IET---KTNWFLGSPFRVDLIDPKDSIPSPIRRT-EKYEDWLGHLEENLTVSWIVIDPIK 230
           +ET   K+ WFL SPFRVD++DPK+S+ + IR     YE W+  +EE++ ++WI+IDPIK
Sbjct: 131 METEKGKSGWFLSSPFRVDILDPKESVQTRIRYPGGDYEAWVKDMEESMKLNWILIDPIK 190

Query: 231 NRAANVSSRQAVKARWQWLSGDIEVEYTTVMGGDGRIGSAEEMVECAVVVSCG------E 290
            RAAN+SSR+AV AR  WL+GD+E+ ++TV+          E  E A VVSCG      E
Sbjct: 191 KRAANISSRKAVSARRNWLTGDLEIRFSTVV--------TAEAAEVAAVVSCGSAEAWKE 250

Query: 291 KEEEKGMEMSVREVSMRMLDMEGKHLKGKESMKILGEAMERGKRI--RGKKWEGKLRFRE 350
            +EE G E+ VR+V +++ D+EGK +KG++S+ IL + +  GKR     ++   K R+ E
Sbjct: 251 VDEEVGGEIHVRDVRLQVEDIEGKCMKGRDSLVIL-QGLLDGKRSCKDDEERRAKERYEE 310

Query: 351 YEERRRLXXXXXERTENALDMLCIFTGIAILFSFCSFFL 378
           Y   +       ER E A D +C+  G ++     SF L
Sbjct: 311 YVRMKIQWRENKERREKAQDTICMIFGFSMFVLLWSFIL 335

[Close]

BLAST of Carg18421-RA vs. Swiss-Prot
Match: sp|Q2V3R1|FB346_ARATH (F-box protein At3g44326 OS=Arabidopsis thaliana OX=3702 GN=At3g44326 PE=2 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.0e-58
Identity = 135/333 (40.54%), Postives = 203/333 (60.96%), Query Frame = 0


Query: 52  IVALHSDILQTHILTRLDGAALTSAASASSRFRRLSSEDLLWRRVCSTSWPSTTHPRVQQ 111
           I A+ SD+L+++ILTRLDG++L + +   S      S++ LWR+ CS +WPST+  RVQ 
Sbjct: 21  INAVSSDVLRSNILTRLDGSSLAALSCTCSNLNSFCSDESLWRQQCSATWPSTSDTRVQS 80

Query: 112 AISAFPSEHRSFFSDVFPVLDCRSLRCDLNRSSCSSTSELISAVDIHYKDKLLFSKVHSI 171
            IS FP  HR+FFSD FP L+       +N      TSELISAVDI YKD ++FS+VH  
Sbjct: 81  IISTFPDGHRTFFSDSFPFLE---HDVGINLPPSVDTSELISAVDIFYKDDVIFSRVHVT 140

Query: 172 ETKTNWFLGSPFRVDLIDPKDSIPSPIRRTEKYED--WLGHLEENLTVSWIVIDPIKNRA 231
           ET + WFL SP RVDL++PK+ IP+ +  T++ +D  W   LEENL++SWI+IDP   RA
Sbjct: 141 ETVSGWFLCSPMRVDLVEPKELIPTRVLVTDQCKDDTWKSDLEENLSLSWILIDPTCKRA 200

Query: 232 ANVSSRQAVKARWQWLSGDIEVEYTTVMGGDGRIGSAEEMVECAVVVSCGEKEEEKGMEM 291
           A+VS+R+ V     WL+G++ V+++++     +  S +      VV++   + EE+   M
Sbjct: 201 ADVSTRKPVSVHRHWLTGEVHVKFSSIFVVGNKKRSEQVEFTVTVVLAVFNRREEETAVM 260

Query: 292 SVREVSMRMLDMEGKHLKGKESMKILGEAMERGKRIR-GKKWEGKLRFREYEERRRLXXX 351
            +REVS+   D +G++L GK S++IL  AM   +R R G + EGK ++ EY ER+     
Sbjct: 261 QIREVSLVAEDKDGRNLGGKVSLEILVAAMGMKRRFRAGGEEEGKEKYIEYMERKTAKAE 320

Query: 352 XXER--TENALDMLCIFTGIAILFSFCSFFLFL 380
              R   E A++    +  + +L     F+LF+
Sbjct: 321 MKWRRGKETAMETAACWIAVLLLGFLLCFYLFM 350

[Close]

BLAST of Carg18421-RA vs. Swiss-Prot
Match: sp|Q9SIH5|FB322_ARATH (Probable F-box protein At2g36090 OS=Arabidopsis thaliana OX=3702 GN=At2g36090 PE=2 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 3.9e-58
Identity = 124/281 (44.13%), Postives = 177/281 (62.99%), Query Frame = 0


Query: 52  IVALHSDILQTHILTRLDGAALTSAASASSRFRRLSSEDLLWRRVCSTSWPSTTHPRVQQ 111
           I  +H DI+++HILTRLDGA L S + ASS    L+S ++LW ++C ++WPS +      
Sbjct: 17  ISTVHDDIIESHILTRLDGATLASVSCASSHLHHLASNEILWSKICRSTWPSCS------ 76

Query: 112 AISAFPSEHRSFFSDVFPVLDCRSLRCDLNRSSCSSTSELISAVDIHYKDKLLFSKVHSI 171
                    RSFFSD + +++      DL+R       ELISAVD+HY+ KL+FS+V   
Sbjct: 77  ------GGSRSFFSDAYSMVETAGTVSDLDR----PFPELISAVDLHYRGKLIFSRVVKT 136

Query: 172 ETKTNWFLGSPFRVDLIDPKDSIPSPIRRTEKYEDWLGHLEENLTVSWIVIDPIKNRAAN 231
           ET T WF  SP R+DL+D KD++ +PI+R ++ ED    LE++LT+SWIVIDPI  RAAN
Sbjct: 137 ETTTAWFKSSPLRIDLVDTKDTVATPIKRRQRTEDTCRDLEKDLTLSWIVIDPIGKRAAN 196

Query: 232 VSSRQAVKARWQWLSGDIEVEYTTVMGGDGRIGSAEEMVECAV-VVSCGEKEEEKGMEMS 291
           +SS + V  +  W+SG++E ++ TV+G           VEC + VV+CGE+      EM 
Sbjct: 197 ISSHRPVSVQRNWISGEVEAQFATVVGA----------VECVITVVTCGEE------EMH 256

Query: 292 VREVSMRMLDMEGKHLKGKESMKILGEAMERGKRIRGKKWE 332
           VREVS+++  MEG HL G++S+ IL   ME GKR+ G + E
Sbjct: 257 VREVSLKVEKMEGTHLNGRDSLVILRSVME-GKRVNGSRRE 264

[Close]

BLAST of Carg18421-RA vs. TrEMBL
Match: tr|A0A1S4DYD6|A0A1S4DYD6_CUCME (probable F-box protein At1g60180 OS=Cucumis melo OX=3656 GN=LOC107991005 PE=4 SV=1)

HSP 1 Score: 477.6 bits (1228), Expect = 2.6e-131
Identity = 253/315 (80.32%), Postives = 274/315 (86.98%), Query Frame = 0


Query: 51  AIVALHSDILQTHILTRLDGAALTSAASASSRFRRLSSEDLLWRRVCSTSWPSTTHPRVQ 110
           AI ALHSDILQTHILTRLDGAALTS AS SSRFRRLSSED LWRRVCSTSWPS THP++Q
Sbjct: 19  AIAALHSDILQTHILTRLDGAALTSTASTSSRFRRLSSEDQLWRRVCSTSWPSITHPKLQ 78

Query: 111 QAISAFPSEHRSFFSDVFPVLDCRSLRCDLNRSSCSSTSELISAVDIHYKDKLLFSKVHS 170
           Q IS FPS+H+SFFSDVFPVLDC SLRCDL+    SST+ELISAVDIHYK+KLLFSKVHS
Sbjct: 79  QLISTFPSKHQSFFSDVFPVLDCCSLRCDLD-YRYSSTAELISAVDIHYKNKLLFSKVHS 138

Query: 171 IETKTNWFLGSPFRVDLIDPKDSIPSPIRRTEKYEDWLGHLEENLTVSWIVIDPIKNRAA 230
           IET+TNWFL SPFRVDLIDPKDSIPSPIRR+EKYEDWLGHLEENLTVSWI+IDPI NRAA
Sbjct: 139 IETETNWFLCSPFRVDLIDPKDSIPSPIRRSEKYEDWLGHLEENLTVSWIIIDPINNRAA 198

Query: 231 NVSSRQAVKARWQWLSGDIEVEYTTVMGGDGRIGSAEEMVECAVVVSCGEKEEEKGMEMS 290
           N+SSRQ VK R  WLSG+I+V+YTTVMGGD R GSA EMVECAVVVSCGEKEEE GMEMS
Sbjct: 199 NISSRQPVKVRRHWLSGEIQVQYTTVMGGDRRAGSAVEMVECAVVVSCGEKEEE-GMEMS 258

Query: 291 VREVSMRMLDMEGKHLKGKESMKILGEAMERGKRIRGKKWEGKLRFREYEERRRLXXXXX 350
           V EVSM+MLDMEGKHL GKES+ IL EAME+GKRIRG+K +GKLR+ E       XXXXX
Sbjct: 259 VTEVSMQMLDMEGKHLNGKESLGILREAMEKGKRIRGRKGDGKLRYEEXXXXXXXXXXXX 318

Query: 351 ERTENALDMLCIFTG 366
              EN LDMLC  +G
Sbjct: 319 XXIENGLDMLCRSSG 331

[Close]

BLAST of Carg18421-RA vs. TrEMBL
Match: tr|A0A0A0KI58|A0A0A0KI58_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425740 PE=4 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 4.3e-110
Identity = 205/244 (84.02%), Postives = 221/244 (90.57%), Query Frame = 0


Query: 51  AIVALHSDILQTHILTRLDGAALTSAASASSRFRRLSSEDLLWRRVCSTSWPSTTHPRVQ 110
           AI ALHSDILQTHILTRLDGAALTS AS SSRFR LSSED LWRRVCSTSWPS THP++Q
Sbjct: 13  AIAALHSDILQTHILTRLDGAALTSTASTSSRFRSLSSEDQLWRRVCSTSWPSITHPKLQ 72

Query: 111 QAISAFPSEHRSFFSDVFPVLDCRSLRCDLNRSSCSSTSELISAVDIHYKDKLLFSKVHS 170
           Q ISAFPS+H+SFFSDVFPVLDC SLRCDL+    S+T ELISAVDIHYK+KLLFSKVHS
Sbjct: 73  QLISAFPSKHQSFFSDVFPVLDCCSLRCDLD-YRYSTTVELISAVDIHYKNKLLFSKVHS 132

Query: 171 IETKTNWFLGSPFRVDLIDPKDSIPSPIRRTEKYEDWLGHLEENLTVSWIVIDPIKNRAA 230
           IET+TNWFL SPFRVDLIDPKDSIPSPIRR+EKYEDWLGHLEENLTVSW++IDPIKNRAA
Sbjct: 133 IETETNWFLCSPFRVDLIDPKDSIPSPIRRSEKYEDWLGHLEENLTVSWVIIDPIKNRAA 192

Query: 231 NVSSRQAVKARWQWLSGDIEVEYTTVMGGDGRIGSAEEMVECAVVVSCGEKEEEKGMEMS 290
           N+SSRQ VK R  WLSG+I+V+YTTVMGGD R GSA EMVECAVVVSCGEKEEE GMEMS
Sbjct: 193 NISSRQPVKVRRHWLSGEIQVQYTTVMGGDRRAGSAVEMVECAVVVSCGEKEEE-GMEMS 252

Query: 291 VREV 295
           V E+
Sbjct: 253 VTEI 254

[Close]

BLAST of Carg18421-RA vs. TrEMBL
Match: tr|A0A2I4FHX5|A0A2I4FHX5_9ROSI (F-box protein At2g27310-like OS=Juglans regia OX=51240 GN=LOC108998937 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.2e-83
Identity = 175/330 (53.03%), Postives = 228/330 (69.09%), Query Frame = 0


Query: 51  AIVALHSDILQTHILTRLDGAALTSAASASSRFRRLSSEDLLWRRVCSTSWPSTTHPRVQ 110
           AI +LH +I+QTHILT LDG  L SAA ASS+  +LS+ED LWR +CS  WPST HP V 
Sbjct: 20  AISSLHPEIIQTHILTLLDGPTLASAACASSQLHKLSNEDKLWRDICSAEWPSTEHPLVS 79

Query: 111 QAISAFPSEHRSFFSDVFPVLDCRSLRCDLNRSSCSSTSELISAVDIHYKDKLLFSKVHS 170
           +AIS+FP+ HRSFFSD FP +D RS   + NRSS      L+SAVD+HYKD+L+ SKV+ 
Sbjct: 80  RAISSFPAGHRSFFSDSFPAIDHRSQTKNTNRSSLPEV--LLSAVDMHYKDELILSKVYE 139

Query: 171 --IETKTNWFLGSPFRVDLIDPKDSIPSPIRRTEKYEDWLGHLEENLTVSWIVIDPIKNR 230
              E++T WFL SPFRVDL+D K+S+ + IR+    + WL +LEENLT+SWIVIDP +NR
Sbjct: 140 TVTESETGWFLCSPFRVDLLDMKESVQTQIRQVGDEKAWLENLEENLTLSWIVIDPNQNR 199

Query: 231 AANVSSRQAVKARWQWLSGDIEVEYTTVMGGDGRIGSAEEMVECAVVVSCGEKEEEKGME 290
           A N+SSR+ V  +  WL+G+I++ Y T+M GD       + V+CAVVV+CG K    G E
Sbjct: 200 ALNISSRRPVSVQRHWLTGEIQLRYATIMAGD-HSSLTSDFVQCAVVVTCGGK---AGKE 259

Query: 291 MSVREVSMRMLDMEGKHLKGKESMKILGEAMERGKRIR-GKKWEGKLRFREYEERRRLXX 350
           M VR+VSM + D+EGKH+ G+ES+ +L  AME GKR +  +K EGK RF EY E ++   
Sbjct: 260 MDVRDVSMLLEDIEGKHVNGRESLVVLKAAMESGKRKKETRKGEGKERFEEYLEMKKGRS 319

Query: 351 XXXERTENALDMLCIFTGIAILFSFCSFFL 378
              +R E A+DM CI TG  I  +F SF L
Sbjct: 320 ERKKRREKAMDMACILTGATIFLTFWSFLL 343

[Close]

BLAST of Carg18421-RA vs. TrEMBL
Match: tr|F6HHD6|F6HHD6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0080g00910 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 5.4e-81
Identity = 165/333 (49.55%), Postives = 225/333 (67.57%), Query Frame = 0


Query: 52  IVALHSDILQTHILTRLDGAALTSAASASSRFRRLSSEDLLWRRVCSTSWPSTTHPRVQQ 111
           I ++H DI+QTHILTRLDG  L +A +ASS+   L++ D LWR +C+++WPS   P +Q 
Sbjct: 8   ITSVHPDIIQTHILTRLDGPTLAAAGAASSQLHALATVDKLWRDICTSTWPSLNDPTLQA 67

Query: 112 AISAFPSEHRSFFSDVFPVL-----DCRSLRCDLNRSSCSSTSELISAVDIHYKDKLLFS 171
            +SAFP  HRSFFSD +P+L             +  ++ S T ELISAVDIHYK+ L+FS
Sbjct: 68  LVSAFPGGHRSFFSDSYPLLAHPLDQYHGQSRKIPPTTSSPTLELISAVDIHYKNSLIFS 127

Query: 172 KVHSIETKTNWFLGSPFRVDLIDPKDSIPSPIRRTEKYE-DWLGHLEENLTVSWIVIDPI 231
           KV + ET T WF  SPFRVDL+DPKD++P+P++ +   +  WL HLE+ LT+SWI+IDP 
Sbjct: 128 KVEATETITGWFQCSPFRVDLLDPKDTVPTPVQYSVDGDYKWLSHLEDTLTLSWILIDPT 187

Query: 232 KNRAANVSSRQAVKARWQWLSGDIEVEYTTVMGGDGRIGSAEEMVECAVVVSCGEKEEEK 291
           + RAAN+SS + V  +  WL+G+++V Y TV+GGD  +GS  E+V+C +VV+C  KE   
Sbjct: 188 RKRAANLSSLRPVSVKRHWLTGEVQVRYATVVGGDRTVGS--EVVQCGIVVTCAGKE--- 247

Query: 292 GMEMSVREVSMRMLDMEGKHLKGKESMKILGEAMERGKRIRGKKWEGKLRFREYEERRRL 351
           G EM VREV++++ DMEG+HL GKES+ IL EA+E G+R + K  EGK R+  Y E    
Sbjct: 248 GGEMQVREVNLQVEDMEGRHLNGKESLVILQEALENGRRKKAKGEEGKARYERYLEMMGE 307

Query: 352 XXXXXERTENALDMLCIFTGIAILFSFCSFFLF 379
                 R E  LDM+CI  G+ I  SF S+FLF
Sbjct: 308 RRERRLRREKTLDMVCIALGVTIFLSFWSYFLF 335

[Close]

BLAST of Carg18421-RA vs. TrEMBL
Match: tr|A0A1R3K3F2|A0A1R3K3F2_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_03079 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 6.0e-80
Identity = 167/328 (50.91%), Postives = 223/328 (67.99%), Query Frame = 0


Query: 52  IVALHSDILQTHILTRLDGAALTSAASASSRFRRLSSEDLLWRRVCSTSWPSTTHPRVQQ 111
           I  +H DI++THILTRLDG +L S A ASS+   LS++D +W+ +CS+ WPS  HPR+Q 
Sbjct: 13  ISTVHPDIIETHILTRLDGPSLASLACASSQLHALSTQDNIWQNICSSIWPSINHPRLQN 72

Query: 112 AISAFPSEHRSFFSDVFPVLDCRSLRCDLNRSSCSSTSELISAVDIHYKDKLLFSKVHSI 171
            IS FPS HRSFFSD +P     S     N +S +  +ELISAVDI+Y++++++SKV  +
Sbjct: 73  IISTFPSGHRSFFSDSYPF--PHSQPSKQNGNSLTLPTELISAVDIYYQNQIIYSKVEEM 132

Query: 172 ETKTNWFLGSPFRVDLIDPKDSIPSPIRRT--EKYEDWLGHLEENLTVSWIVIDPIKNRA 231
           ET +NWFL SPFRVDL+  KDSI +PI+     K + WL HLEENL++SWIVIDP + +A
Sbjct: 133 ETSSNWFLYSPFRVDLLGQKDSISTPIKYVGGSKVDAWLKHLEENLSLSWIVIDPTRKKA 192

Query: 232 ANVSSRQAVKARWQWLSGDIEVEYTTVMGGDGRIGSAEEMVECAVVVSCGEKEEEKGMEM 291
            N+SSR  V  +  WL+GD++V + TVM GDG  GSA EMVEC VVV CG KE   G EM
Sbjct: 193 VNMSSRGPVSVQRHWLTGDVQVRFGTVMAGDGWRGSAREMVECGVVVICGGKE---GGEM 252

Query: 292 SVREVSMRMLDMEGKHLKGKESMKILGEAMERGKRIRGKKWEGKLRFREYEERRRLXXXX 351
            V EVSM M DM+GK L GK+S+ IL   +E G+R +    EGK ++ ++EER+R     
Sbjct: 253 HVNEVSMVMEDMDGKALNGKDSLVILKGILENGRRKKLNGNEGKEKYEQFEERKRGRKEG 312

Query: 352 XERTENALDMLCIFTGIAILFSFCSFFL 378
            +R + ALD++CI  G+A   +F S  L
Sbjct: 313 RQRNDRALDLVCIAVGVAGFVAFWSAML 335

The following BLAST results are available for this feature:

BLAST of Carg18421-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944112.1	2.8e-190	97.91	probable F-box protein At2g36090 [Cucurbita moschata]	[more]
XP_023512160.1	9.1e-189	96.87	probable F-box protein At2g36090 [Cucurbita pepo subsp. pepo]	[more]
XP_022986218.1	1.3e-182	94.10	probable F-box protein At2g36090 [Cucurbita maxima]	[more]
XP_011658460.1	4.9e-134	79.57	PREDICTED: probable F-box protein At1g60180 [Cucumis sativus]	[more]
XP_022995112.1	9.2e-133	75.99	probable F-box protein At2g36090 [Cucurbita maxima]	[more]

BLAST of Carg18421-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27310.1	1.6e-62	42.18	F-box family protein	[more]
AT3G44326.1	1.7e-59	40.54	F-box family protein	[more]
AT2G36090.1	2.2e-59	44.13	F-box family protein	[more]

BLAST of Carg18421-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9XIN8\|FB119_ARATH	2.9e-61	42.18	F-box protein At2g27310 OS=Arabidopsis thaliana OX=3702 GN=At2g27310 PE=2 SV=1	[more]
sp\|Q2V3R1\|FB346_ARATH	3.0e-58	40.54	F-box protein At3g44326 OS=Arabidopsis thaliana OX=3702 GN=At3g44326 PE=2 SV=1	[more]
sp\|Q9SIH5\|FB322_ARATH	3.9e-58	44.13	Probable F-box protein At2g36090 OS=Arabidopsis thaliana OX=3702 GN=At2g36090 PE...	[more]

BLAST of Carg18421-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DYD6\|A0A1S4DYD6_CUCME	2.6e-131	80.32	probable F-box protein At1g60180 OS=Cucumis melo OX=3656 GN=LOC107991005 PE=4 SV...	[more]
tr\|A0A0A0KI58\|A0A0A0KI58_CUCSA	4.3e-110	84.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425740 PE=4 SV=1	[more]
tr\|A0A2I4FHX5\|A0A2I4FHX5_9ROSI	1.2e-83	53.03	F-box protein At2g27310-like OS=Juglans regia OX=51240 GN=LOC108998937 PE=4 SV=1	[more]
tr\|F6HHD6\|F6HHD6_VITVI	5.4e-81	49.55	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0080g00910 PE=4 SV=...	[more]
tr\|A0A1R3K3F2\|A0A1R3K3F2_COCAP	6.0e-80	50.91	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_03079 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036047	F-box-like_dom_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg18421	Carg18421	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg18421-RA.CDS.1	Carg18421-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg18421-RA.exon.1	Carg18421-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg18421-RA	Carg18421-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 45..177 e-value: 1.4E-6 score: 30.1
None	No IPR available	PANTHER	PTHR33736:SF10	SUBFAMILY NOT NAMED	coord: 39..378
None	No IPR available	PANTHER	PTHR33736	FAMILY NOT NAMED	coord: 39..378
IPR036047	F-box-like domain superfamily	SUPERFAMILY	SSF81383	F-box domain	coord: 45..122