Carg18392-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATGAAGAAGGAAAGAAAAGAACTGATGTACATAGTGGAATTCAGTATGATTTGATTGTGTCTGCAGCATCTGTTCTTCCAATTGAAGACATAGTTAGCTGGGCACATCGTTTTGGGGCTAAAGTGCTAGTAGATGCATGCCAGAGCGTTCCACATATGGTTGTCGACGTCCAGGCGCTTGATGCTGACTTTCTTGTTGCTTCTTCTCACAAGGTTAGGCTGTTTTCTTATTAATTAAATCTTGGGCCTTACATTTGTGCATATGAAGTTAAGGAATAAACATGCTTCAGATGTGTGGGCCTACAGGCATCGGATTTTTATATGGAAAGATTGATCTGCTGTCTGCAATGCCTCCATTCTTAGGTAGGTACTTCGAGAAGATAAGCTATGAAAGCAAATATATATAAATAAACTTGTATCAGTTAGTTAGACGGGAGTCAATATCTAATTTTCATATCTGGTCCTACATGGCTCTAGGTGGTGGAGAGATGATCTCAGATGTATTTCTTGACCATTCCACATTTGCAGAACCTCCTTCCAGGTTGGTGAACTGCAAGGGTGCAACGTTTTCCTTTTATTCTAAATGGGGTGGAAAAATTAGAACGTTCAATATATAAGACTGAGGACATGCTGAATATGCCATTAATCTTCTATGTTTTATTCCTAAAATTAGAGCACCTAAAGTTTCATTTAATTTTTTTAAAATAATATCATGAACTTTAGCGCTTTATCTATAAGTTTCTATGCTGGCTGCTGATTTTGTTTGCTCATCTTTTTGCAATTGACACTTGGCTTAATTTCGAACGTAATACATTAGATTCGAGGCTGGGACACCAGCGATTGGAGAAGCAATTGGATTGGGAGCTGCTATTGATTATTTGTCTGAAATCGGCATGCAAAAGATTCATACTTATGAAGTGAGTTGATTGAGATTTGGCTTATGTATCCCTTTGAAATTTGTTGGGGTGAAAAAGTTGCATAGTAATGGAAATCTTGCTCCAATCAAGGGATTCAGATATTATTTTTCATCAACATCCTGGAAATCTGAAATCGAAAACTGGAAGCATAGGATGAGATGATAAATATGTTCACAAGTTTTGATACTGTAGTCTAACCAGCAATGAGTTTCTGTCTGCTAACAGGAAGAATTGGCGAATTATCTATATGAGAACCTTCGTGCAGTCCCTAACATTCGCATATATGGCCCAGTCCCTAATGCTCAACGTGCTGCTCTGTGCTCGTTCAATATTGAAAACATGCATCCAACGGACATTGCAACTTTTCTTGATCAACAGGTACATCAAGGGAGATTGTATTATTAGAGTGCATCACTTACTTTCTATGGGTCCTTACATATATTTTAATGCAGCATGGTATAGCCATCAGATCAGGACATCACTGTGCGCAGCCCCTCCATCGGGCTCTCGGTGTGAGCTCGAGCGCACGAGCTAGCCTTTACTTCTACAACACAAAAGAGGATGTGGACTACTTTATCCAGGCTCTAAATGACACTGTAAATTTCTTCGATTCCTTCAAGTAGGGATCTGGTAATACCAAAACTTGTTGGTTTGGCGGGTCCACTGCATGGGGATTATGCTCTGTTTCTTATGCTCTGTTTCTTGGTTTGATGAAGATTGTCTTTCTTCTTGCTATCTTGAGCTGAGCCTGTGACATTTACTACCAGATGTTTGCCCATGTAAACACCACAGATTTCTCCTAGTTTTAGACTTTAGTTTATCTATAAATTATTTAATTAAGCTATGCTTTCGTGGACTCATTTTTCTCAAGATAATGGATACTGTCAGTGTATTATATATAGTGAACACTCAAATAAGAAGTCTCAGATTCCTTAGGCTCATGACCATGACGGTTTATTTTAATGAAATATAATACCATAAAATCAATTTTATGTTTGATCTAAAAGTATACATAAATTCTAAAGC ATGAATGAAGAAGGAAAGAAAAGAACTGATGTACATAGTGGAATTCAGTATGATTTGATTGTGTCTGCAGCATCTGTTCTTCCAATTGAAGACATAGTTAGCTGGGCACATCGTTTTGGGGCTAAAGTGCTAGTAGATGCATGCCAGAGCGTTCCACATATGGTTGTCGACGTCCAGGCGCTTGATGCTGACTTTCTTGTTGCTTCTTCTCACAAGATGTGTGGGCCTACAGGCATCGGATTTTTATATGGAAAGATTGATCTGCTGTCTGCAATGCCTCCATTCTTAGGTGGTGGAGAGATGATCTCAGATGTATTTCTTGACCATTCCACATTTGCAGAACCTCCTTCCAGATTCGAGGCTGGGACACCAGCGATTGGAGAAGCAATTGGATTGGGAGCTGCTATTGATTATTTGTCTGAAATCGGCATGCAAAAGATTCATACTTATGAAGAAGAATTGGCGAATTATCTATATGAGAACCTTCGTGCAGTCCCTAACATTCGCATATATGGCCCAGTCCCTAATGCTCAACGTGCTGCTCTGTGCTCGTTCAATATTGAAAACATGCATCCAACGGACATTGCAACTTTTCTTGATCAACAGCATGGTATAGCCATCAGATCAGGACATCACTGTGCGCAGCCCCTCCATCGGGCTCTCGGTGTGAGCTCGAGCGCACGAGCTAGCCTTTACTTCTACAACACAAAAGAGGATGTGGACTACTTTATCCAGGCTCTAAATGACACTGTAAATTTCTTCGATTCCTTCAAGTAGGGATCTGGTAATACCAAAACTTGTTGGTTTGGCGGGTCCACTGCATGGGGATTATGCTCTGTTTCTTATGCTCTGTTTCTTGGTTTGATGAAGATTGTCTTTCTTCTTGCTATCTTGAGCTGAGCCTGTGACATTTACTACCAGATGTTTGCCCATGTAAACACCACAGATTTCTCCTAGTTTTAGACTTTAGTTTATCTATAAATTATTTAATTAAGCTATGCTTTCGTGGACTCATTTTTCTCAAGATAATGGATACTGTCAGTGTATTATATATAGTGAACACTCAAATAAGAAGTCTCAGATTCCTTAGGCTCATGACCATGACGGTTTATTTTAATGAAATATAATACCATAAAATCAATTTTATGTTTGATCTAAAAGTATACATAAATTCTAAAGC ATGAATGAAGAAGGAAAGAAAAGAACTGATGTACATAGTGGAATTCAGTATGATTTGATTGTGTCTGCAGCATCTGTTCTTCCAATTGAAGACATAGTTAGCTGGGCACATCGTTTTGGGGCTAAAGTGCTAGTAGATGCATGCCAGAGCGTTCCACATATGGTTGTCGACGTCCAGGCGCTTGATGCTGACTTTCTTGTTGCTTCTTCTCACAAGATGTGTGGGCCTACAGGCATCGGATTTTTATATGGAAAGATTGATCTGCTGTCTGCAATGCCTCCATTCTTAGGTGGTGGAGAGATGATCTCAGATGTATTTCTTGACCATTCCACATTTGCAGAACCTCCTTCCAGATTCGAGGCTGGGACACCAGCGATTGGAGAAGCAATTGGATTGGGAGCTGCTATTGATTATTTGTCTGAAATCGGCATGCAAAAGATTCATACTTATGAAGAAGAATTGGCGAATTATCTATATGAGAACCTTCGTGCAGTCCCTAACATTCGCATATATGGCCCAGTCCCTAATGCTCAACGTGCTGCTCTGTGCTCGTTCAATATTGAAAACATGCATCCAACGGACATTGCAACTTTTCTTGATCAACAGCATGGTATAGCCATCAGATCAGGACATCACTGTGCGCAGCCCCTCCATCGGGCTCTCGGTGTGAGCTCGAGCGCACGAGCTAGCCTTTACTTCTACAACACAAAAGAGGATGTGGACTACTTTATCCAGGCTCTAAATGACACTGTAAATTTCTTCGATTCCTTCAAGTAG MNEEGKKRTDVHSGIQYDLIVSAASVLPIEDIVSWAHRFGAKVLVDACQSVPHMVVDVQALDADFLVASSHKMCGPTGIGFLYGKIDLLSAMPPFLGGGEMISDVFLDHSTFAEPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMQKIHTYEEELANYLYENLRAVPNIRIYGPVPNAQRAALCSFNIENMHPTDIATFLDQQHGIAIRSGHHCAQPLHRALGVSSSARASLYFYNTKEDVDYFIQALNDTVNFFDSFK
BLAST of Carg18392-RA vs. NCBI nr
Match: XP_022943969.1 (cysteine desulfurase 1, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 481.9 bits (1239), Expect = 1.4e-132 Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0
BLAST of Carg18392-RA vs. NCBI nr
Match: XP_023513282.1 (cysteine desulfurase 1, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 476.1 bits (1224), Expect = 7.6e-131 Identity = 232/235 (98.72%), Postives = 234/235 (99.57%), Query Frame = 0
BLAST of Carg18392-RA vs. NCBI nr
Match: XP_022986220.1 (cysteine desulfurase 1, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 472.6 bits (1215), Expect = 8.4e-130 Identity = 230/235 (97.87%), Postives = 232/235 (98.72%), Query Frame = 0
BLAST of Carg18392-RA vs. NCBI nr
Match: XP_022986219.1 (cysteine desulfurase 1, chloroplastic-like, partial [Cucurbita maxima]) HSP 1 Score: 466.8 bits (1200), Expect = 4.6e-128 Identity = 227/232 (97.84%), Postives = 229/232 (98.71%), Query Frame = 0
BLAST of Carg18392-RA vs. NCBI nr
Match: XP_022153071.1 (cysteine desulfurase 1, chloroplastic [Momordica charantia]) HSP 1 Score: 453.8 bits (1166), Expect = 4.0e-124 Identity = 220/237 (92.83%), Postives = 229/237 (96.62%), Query Frame = 0
BLAST of Carg18392-RA vs. TAIR10
Match: AT1G08490.1 (chloroplastic NIFS-like cysteine desulfurase) HSP 1 Score: 394.8 bits (1013), Expect = 4.0e-110 Identity = 190/237 (80.17%), Postives = 210/237 (88.61%), Query Frame = 0
BLAST of Carg18392-RA vs. TAIR10
Match: AT5G65720.1 (nitrogen fixation S (NIFS)-like 1) HSP 1 Score: 55.5 bits (132), Expect = 5.8e-08 Identity = 57/232 (24.57%), Postives = 98/232 (42.24%), Query Frame = 0
BLAST of Carg18392-RA vs. Swiss-Prot
Match: sp|Q93WX6|CNIF1_ARATH (Cysteine desulfurase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NFS2 PE=1 SV=1) HSP 1 Score: 394.8 bits (1013), Expect = 7.3e-109 Identity = 190/237 (80.17%), Postives = 210/237 (88.61%), Query Frame = 0
BLAST of Carg18392-RA vs. Swiss-Prot
Match: sp|Q55793|CSD_SYNY3 (Probable cysteine desulfurase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=csd PE=1 SV=1) HSP 1 Score: 308.9 bits (790), Expect = 5.3e-83 Identity = 145/230 (63.04%), Postives = 177/230 (76.96%), Query Frame = 0
BLAST of Carg18392-RA vs. Swiss-Prot
Match: sp|O32164|SUFS_BACSU (Cysteine desulfurase SufS OS=Bacillus subtilis (strain 168) OX=224308 GN=sufS PE=1 SV=1) HSP 1 Score: 241.9 bits (616), Expect = 7.9e-63 Identity = 121/230 (52.61%), Postives = 159/230 (69.13%), Query Frame = 0
BLAST of Carg18392-RA vs. Swiss-Prot
Match: sp|Q9XAD5|CSD_STRCO (Probable cysteine desulfurase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) OX=100226 GN=csd PE=3 SV=1) HSP 1 Score: 239.2 bits (609), Expect = 5.1e-62 Identity = 114/227 (50.22%), Postives = 151/227 (66.52%), Query Frame = 0
BLAST of Carg18392-RA vs. Swiss-Prot
Match: sp|Q9K7A0|CSD_BACHD (Probable cysteine desulfurase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=csd PE=3 SV=2) HSP 1 Score: 233.8 bits (595), Expect = 2.1e-60 Identity = 120/230 (52.17%), Postives = 152/230 (66.09%), Query Frame = 0
BLAST of Carg18392-RA vs. TrEMBL
Match: tr|A0A0A0KEG9|A0A0A0KEG9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G427980 PE=4 SV=1) HSP 1 Score: 446.8 bits (1148), Expect = 3.3e-122 Identity = 220/237 (92.83%), Postives = 227/237 (95.78%), Query Frame = 0
BLAST of Carg18392-RA vs. TrEMBL
Match: tr|A0A1S3BLT6|A0A1S3BLT6_CUCME (cysteine desulfurase 1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103491447 PE=4 SV=1) HSP 1 Score: 444.1 bits (1141), Expect = 2.1e-121 Identity = 218/237 (91.98%), Postives = 227/237 (95.78%), Query Frame = 0
BLAST of Carg18392-RA vs. TrEMBL
Match: tr|A0A2P5FUQ4|A0A2P5FUQ4_9ROSA (Cysteine desulfurase OS=Trema orientalis OX=63057 GN=TorRG33x02_028230 PE=4 SV=1) HSP 1 Score: 427.9 bits (1099), Expect = 1.6e-116 Identity = 205/237 (86.50%), Postives = 222/237 (93.67%), Query Frame = 0
BLAST of Carg18392-RA vs. TrEMBL
Match: tr|W9RTX1|W9RTX1_9ROSA (Cysteine desulfurase 2 OS=Morus notabilis OX=981085 GN=L484_019779 PE=4 SV=1) HSP 1 Score: 426.0 bits (1094), Expect = 6.0e-116 Identity = 202/237 (85.23%), Postives = 221/237 (93.25%), Query Frame = 0
BLAST of Carg18392-RA vs. TrEMBL
Match: tr|A0A0L9VET2|A0A0L9VET2_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g185300 PE=3 SV=1) HSP 1 Score: 423.3 bits (1087), Expect = 3.9e-115 Identity = 204/237 (86.08%), Postives = 217/237 (91.56%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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