Carg17811-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCGAGAGATCGTGACCCTCTAGTCGTCGAGAGAGTGATCGGCGATGTCATCGACTCGTTCTCGAGGTCCATCTCGATTAGGGTTGTTTACAACTCGAGGGAAGTTAAGAATGGCTGTGAGCTCAAACCCTGTCAAGTTATCAACAAGCCAAGAGTTGAGATTGGTGGCACTGACCTTCGCACCTTCTTCACTTTGGTAGAAGCTTTGTTTTACATTTTTTTTTTTTTTTTTAATTCCATTTTCTTCTTCTTCTTCTTCACCTCTCGCTTCTTTTCGTTAGGTTATGGTGGATCCCGACGCTCCTAGCCCTAGCGATCCCAATCTAAGAGAATACTTGCATTGGTACGTCCTCTCGTTCTCGTTCTTTTCCACTATAAACATGCATTTTATACTTGCAGTTGGGACAGTCTACCCTAATCTCAGAAACCGAGTATTACGTTTCTGTTGTCGTGTCAACGTTTTTTCAACATGGTTACATGTTCATGACTTCTGGGTATCAAAGCTTCTATCCCATCAGACAAGACTCGACCATGCTTTTTTTAGAAATATCGAAAAGGTAGTTGAAAATTGTGGTCAAAACTACTTTACGTGTCTTGGAATGAAAATGTACTAAAAGCATAAAACACTGAACAAAAGTTGGTCGGGTTAGCTCGAGAATCGACTCTTAGCTTTACGAGTATTAATTCTTTATATTTATTATTGTTTTAAAGTGGAAAAAAAAAATTATTTTAAGAATTAGAAAATGATTATGAATTTGATGGTTATGTCGTAGAAAAAGGTGTACGGACCATAAAAGACAAAAGTTTTTTTTTTTTAAATAAAATAAATAAATAGAAAAGAAATGGACTTTCACTGTTAGGACAGAAAAGGAATAAAGCTGAAACTTGTCTGATTGATGGATCGAACTCTGTCCGTAAATGAAAGAATTTTTGTATAGTTTTTTATTTTTTTAATTTATTTTTAATTGTCTTTTTTATAATAATAATAATATCGATTTAATTTCAATTTGGTTTTTATAGTTTTAAATATTTTTAATTTAGTCCTTGTAATTTCAAATATTTTTTGTTGTTTACGTGTAGTGAGTGAGCTGGTGGTTGACTATGTTGGTCAAAGATATTTGGATATAGTCGAGTAAGAAATGGATGGAGTGATTGAGTTTTCGAGTGGATAAAATTAAGTTGGCGAGTTATTTGTGTAATTTCAGTGAATTGTAGGGATCGTATTGAAATTGAAATTAAGCGAAGGGATCAATTTGAAAAAGAAAAAATTCAACATTTTTCTTCTTGTCCTTCTACGTAAATCAATTGATGAGATGGGTGGACCTTTCTTGTTCTTGTACTTCGTATACTCGAATCGATCGATGAAATGAGTGGACCCTTCTGTTTCAACATGAACTAGTCGATGAGATGGGTAAATTTTGCTTTTTCAACACGAACCAGACAATGAGATGGGTGGACCCTCGTTCTCGTCCTCGACCCTTCTTCTTCTTCAACATGAACTAGTCAAGAAGATGGGCAAATCCTACTTTTTCCATACGAACCGCGTCGACCCTTCTTCTTCTTCTTCAACATGAACTAGTCAAGAAGATGGGCAAACCCTACTTTTTCAACACGAGTCGGTCGATGATATGGGTAGACCCTCCCGATCCTCCTCCTCCTCCTCCTCCACCACGAACCAGTTGATGAGATAGGTGAACCTTCGTCCTCCTCCTACTCGACCCTTCTTCTTCTTCAACATGAACTAGTCAACAAGATGGACATACCATACTTTTTCCACACGAACCGGTCAATGAGATGGGTGGAACCTTATCCTCGCCCTCGTCCTCGACCCTTCTTCTTCTTCTTCTGCATGAACTAGTCAAGAAGATGGGTAAACCCTACTTTTTCAACACGAGTCAGTCGATGAGATGGGTAGACCCTCCCAACCCTCCTCCTCCACCATGAACCAGTTGATGAGATGGGTGAACCCTCCTCCTCCTCCTACTCGACCCTTCTTCTTCTTCCAACATGAACTAGTCGAGAAGATGGACAAACCCTACTTTTTCAACACAAACCAGTCGATGAGATGGGTGGACCCTCCTCCTCTTCCTCGCTTTTTGCTACATAAATATACTACATATTAGACTTGACCTTCTAACCTCGATCATTCTCTTAAATTCTCTTTCATATTTTGGTTCATTTGACAGGTTAGTGACCGATATTCCAGCTACAACCGAGGCAACCTTTGGTACGTTGTTCTTTTAGTTAACACATAAACTAAATTCCTGAAAAAAAACCGACACGAAAAACAAATCATTGTAAAGCGGGAAATCAAACCCTAGACATGTTAATCAAAAAACCGACAAACTTAAACCAATTGAACTATGTTGAGGTTGACGGGTCGACCGGTGAATGGTAGGACAAGAGATAGTGTGCTACGAGAATCCAAGACCAACGGTGGGTATCCACCGGTTTGTGCTGGTCTTGTTCCGGCAGCTCGGACGGCAAACGGTGTATGCTCCTGGGTGGCGCCAGAACTTCAACACCAGACACTTTGCAGAGCTTTACAATCTTGGTTCGCCGGTCGCCGCCGTTTACTTCAATTGCCAAAGGGAAAATGGCTCCGGTGGAAGGAGAAGAGCCGGCGATGAATGTTCATAAAAACACTTCACTTCACATTA ATGCCGAGAGATCGTGACCCTCTAGTCGTCGAGAGAGTGATCGGCGATGTCATCGACTCGTTCTCGAGGTCCATCTCGATTAGGGTTGTTTACAACTCGAGGGAAGTTAAGAATGGCTGTGAGCTCAAACCCTGTCAAGTTATCAACAAGCCAAGAGTTGAGATTGGTGGCACTGACCTTCGCACCTTCTTCACTTTGGTTATGGTGGATCCCGACGCTCCTAGCCCTAGCGATCCCAATCTAAGAGAATACTTGCATTGGTTAGTGACCGATATTCCAGCTACAACCGAGGCAACCTTTGGACAAGAGATAGTGTGCTACGAGAATCCAAGACCAACGGTGGGTATCCACCGGTTTGTGCTGGTCTTGTTCCGGCAGCTCGGACGGCAAACGGTGTATGCTCCTGGGTGGCGCCAGAACTTCAACACCAGACACTTTGCAGAGCTTTACAATCTTGGTTCGCCGGTCGCCGCCGTTTACTTCAATTGCCAAAGGGAAAATGGCTCCGGTGGAAGGAGAAGAGCCGGCGATGAATGTTCATAAAAACACTTCACTTCACATTA ATGCCGAGAGATCGTGACCCTCTAGTCGTCGAGAGAGTGATCGGCGATGTCATCGACTCGTTCTCGAGGTCCATCTCGATTAGGGTTGTTTACAACTCGAGGGAAGTTAAGAATGGCTGTGAGCTCAAACCCTGTCAAGTTATCAACAAGCCAAGAGTTGAGATTGGTGGCACTGACCTTCGCACCTTCTTCACTTTGGTTATGGTGGATCCCGACGCTCCTAGCCCTAGCGATCCCAATCTAAGAGAATACTTGCATTGGTTAGTGACCGATATTCCAGCTACAACCGAGGCAACCTTTGGACAAGAGATAGTGTGCTACGAGAATCCAAGACCAACGGTGGGTATCCACCGGTTTGTGCTGGTCTTGTTCCGGCAGCTCGGACGGCAAACGGTGTATGCTCCTGGGTGGCGCCAGAACTTCAACACCAGACACTTTGCAGAGCTTTACAATCTTGGTTCGCCGGTCGCCGCCGTTTACTTCAATTGCCAAAGGGAAAATGGCTCCGGTGGAAGGAGAAGAGCCGGCGATGAATGTTCATAA MPRDRDPLVVERVIGDVIDSFSRSISIRVVYNSREVKNGCELKPCQVINKPRVEIGGTDLRTFFTLVMVDPDAPSPSDPNLREYLHWLVTDIPATTEATFGQEIVCYENPRPTVGIHRFVLVLFRQLGRQTVYAPGWRQNFNTRHFAELYNLGSPVAAVYFNCQRENGSGGRRRAGDECS
BLAST of Carg17811-RA vs. NCBI nr
Match: XP_023516680.1 (protein HEADING DATE 3A-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 373.6 bits (958), Expect = 3.7e-100 Identity = 177/180 (98.33%), Postives = 177/180 (98.33%), Query Frame = 0
BLAST of Carg17811-RA vs. NCBI nr
Match: XP_022960567.1 (protein HEADING DATE 3A-like [Cucurbita moschata] >ABR20498.1 FTL1 [Cucurbita moschata]) HSP 1 Score: 372.1 bits (954), Expect = 1.1e-99 Identity = 176/180 (97.78%), Postives = 177/180 (98.33%), Query Frame = 0
BLAST of Carg17811-RA vs. NCBI nr
Match: XP_022987455.1 (protein HEADING DATE 3A-like [Cucurbita maxima]) HSP 1 Score: 366.7 bits (940), Expect = 4.5e-98 Identity = 173/180 (96.11%), Postives = 176/180 (97.78%), Query Frame = 0
BLAST of Carg17811-RA vs. NCBI nr
Match: ABI94605.1 (flowering locus T-like 1 [Cucurbita maxima]) HSP 1 Score: 364.8 bits (935), Expect = 1.7e-97 Identity = 172/180 (95.56%), Postives = 176/180 (97.78%), Query Frame = 0
BLAST of Carg17811-RA vs. NCBI nr
Match: XP_022149957.1 (protein HEADING DATE 3A [Momordica charantia]) HSP 1 Score: 340.1 bits (871), Expect = 4.5e-90 Identity = 161/178 (90.45%), Postives = 168/178 (94.38%), Query Frame = 0
BLAST of Carg17811-RA vs. TAIR10
Match: AT1G65480.1 (PEBP (phosphatidylethanolamine-binding protein) family protein) HSP 1 Score: 287.7 bits (735), Expect = 4.8e-78 Identity = 130/169 (76.92%), Postives = 147/169 (86.98%), Query Frame = 0
BLAST of Carg17811-RA vs. TAIR10
Match: AT4G20370.1 (PEBP (phosphatidylethanolamine-binding protein) family protein) HSP 1 Score: 274.6 bits (701), Expect = 4.2e-74 Identity = 126/169 (74.56%), Postives = 141/169 (83.43%), Query Frame = 0
BLAST of Carg17811-RA vs. TAIR10
Match: AT5G62040.1 (PEBP (phosphatidylethanolamine-binding protein) family protein) HSP 1 Score: 214.9 bits (546), Expect = 4.0e-56 Identity = 105/176 (59.66%), Postives = 134/176 (76.14%), Query Frame = 0
BLAST of Carg17811-RA vs. TAIR10
Match: AT5G03840.1 (PEBP (phosphatidylethanolamine-binding protein) family protein) HSP 1 Score: 207.2 bits (526), Expect = 8.3e-54 Identity = 99/169 (58.58%), Postives = 128/169 (75.74%), Query Frame = 0
BLAST of Carg17811-RA vs. TAIR10
Match: AT2G27550.1 (centroradialis) HSP 1 Score: 204.1 bits (518), Expect = 7.0e-53 Identity = 100/171 (58.48%), Postives = 128/171 (74.85%), Query Frame = 0
BLAST of Carg17811-RA vs. Swiss-Prot
Match: sp|Q93WI9|HD3A_ORYSJ (Protein HEADING DATE 3A OS=Oryza sativa subsp. japonica OX=39947 GN=HD3A PE=1 SV=1) HSP 1 Score: 300.1 bits (767), Expect = 1.7e-80 Identity = 135/171 (78.95%), Postives = 154/171 (90.06%), Query Frame = 0
BLAST of Carg17811-RA vs. Swiss-Prot
Match: sp|Q9SXZ2|FT_ARATH (Protein FLOWERING LOCUS T OS=Arabidopsis thaliana OX=3702 GN=FT PE=1 SV=2) HSP 1 Score: 287.7 bits (735), Expect = 8.7e-77 Identity = 130/169 (76.92%), Postives = 147/169 (86.98%), Query Frame = 0
BLAST of Carg17811-RA vs. Swiss-Prot
Match: sp|Q8VWH2|RFT1_ORYSJ (Protein RICE FLOWERING LOCUS T 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RFT1 PE=2 SV=1) HSP 1 Score: 282.3 bits (721), Expect = 3.7e-75 Identity = 128/168 (76.19%), Postives = 146/168 (86.90%), Query Frame = 0
BLAST of Carg17811-RA vs. Swiss-Prot
Match: sp|Q9S7R5|TSF_ARATH (Protein TWIN SISTER of FT OS=Arabidopsis thaliana OX=3702 GN=TSF PE=2 SV=1) HSP 1 Score: 274.6 bits (701), Expect = 7.7e-73 Identity = 126/169 (74.56%), Postives = 141/169 (83.43%), Query Frame = 0
BLAST of Carg17811-RA vs. Swiss-Prot
Match: sp|Q9XH43|CET2_TOBAC (CEN-like protein 2 OS=Nicotiana tabacum OX=4097 GN=CET2 PE=2 SV=1) HSP 1 Score: 215.3 bits (547), Expect = 5.5e-55 Identity = 107/171 (62.57%), Postives = 130/171 (76.02%), Query Frame = 0
BLAST of Carg17811-RA vs. TrEMBL
Match: tr|A6YE09|A6YE09_CUCMO (FTL1 OS=Cucurbita moschata OX=3662 PE=2 SV=1) HSP 1 Score: 372.1 bits (954), Expect = 7.1e-100 Identity = 176/180 (97.78%), Postives = 177/180 (98.33%), Query Frame = 0
BLAST of Carg17811-RA vs. TrEMBL
Match: tr|A6XN26|A6XN26_CUCMA (Flowering locus T-like 1 OS=Cucurbita maxima OX=3661 GN=FTL1 PE=2 SV=1) HSP 1 Score: 364.8 bits (935), Expect = 1.1e-97 Identity = 172/180 (95.56%), Postives = 176/180 (97.78%), Query Frame = 0
BLAST of Carg17811-RA vs. TrEMBL
Match: tr|A6YE10|A6YE10_CUCMO (FTL2 OS=Cucurbita moschata OX=3662 PE=2 SV=1) HSP 1 Score: 337.8 bits (865), Expect = 1.5e-89 Identity = 158/178 (88.76%), Postives = 168/178 (94.38%), Query Frame = 0
BLAST of Carg17811-RA vs. TrEMBL
Match: tr|A0A1S3B9B8|A0A1S3B9B8_CUCME (protein HEADING DATE 3A OS=Cucumis melo OX=3656 GN=LOC103487203 PE=4 SV=1) HSP 1 Score: 337.8 bits (865), Expect = 1.5e-89 Identity = 159/178 (89.33%), Postives = 168/178 (94.38%), Query Frame = 0
BLAST of Carg17811-RA vs. TrEMBL
Match: tr|B9ZYL0|B9ZYL0_CUCSA (FT-like protein OS=Cucumis sativus OX=3659 GN=CsFT PE=2 SV=1) HSP 1 Score: 337.8 bits (865), Expect = 1.5e-89 Identity = 159/178 (89.33%), Postives = 168/178 (94.38%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
|