Carg17148-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGACAATTTTCGTCCCGCCGAGAGAAGATAGTAGAGCTATCTGCTAGAGACGCTGGTACATCGATTCGAGTTAACGCGCCATTCATCAGTAATCTGTTACGAGCTTCAGCTTTCAACTGATCGGCGATGCAGGGAGTTATGGAAGCTAATTTGTCTTCGTTTAAGGTACGGCTTGTTTCCACTCTTTCCTGCCTTTTTCCGGCTTGTATGAAACCGAAATCTCTGGACGCGCATACTCTATCAAGGATGAATCTATTTTCTTCAGTTTTCTATCTTCTTCATGATGCGTTAAGATCCAGGAACTCTTTTTCAAACGATTTGTTCGTTTATTGGCTGTGTATATGACAAGGTTCTTCGAGTTTGCTTTCTAGCAATCGGCATGTCGACTGCAACTACCAGTATATAGCTGATATTTACTTACCTTTCAGAAGAAATGGTGTTTGTTTGCAGTCAGTATTGATTGTTTTATAATGCTCCACGTTGAGCTGAGTCTTTTGGTTTTGTTTTGTAAATTTGCAATGACGTTCGCTGTGAAAGACTGGACACTACTAAAGCTAGCAGTGATCGTCAAGTGCTCTTTAACTTCGAGTTGACACTGCCTATATGTTTAAATTCGTCTACTTCATTGAGATCTCTGATCCGATCATCAGTACAATATGCAGAGATTCGTTTGTTTAGTATTTATCTAAGTACTGATTCCAATAGTTGAAGACAAAATACTGAGCAATTGCATAATCCAGACTTAAGGAAGTTTCTATTAGCGGTATTGTGAATATCAAATGTCCGTGTCGGTCCATCAATATGGAAATGTTGCGGATATTTTAAAAAATATCACGTTCATAAGAGTTTTAAACTATTCGTATTAATAAATAATCATCTATCAGTTCATCGTTGATTGTATTTATATTTTTACTGTTGTTAATTTCTAATATTTCTTGATCTTTACCACTTGTCATTGAGGTATTCGTCAGATTTAGGCGAGAAGAAAAAGATGCTTTTCTCGATGCTTAATCTTTTGATTTATAAAAATGCCAGCACGACTATTAGAAAGTTACTCCATTCTAACTATAACCTTTGACAATGGCCATTACATTCTGAAACAACTTTGAGAATCATCATCGATTTAACCTTGTGGGTTTGCTTAACTTTTTCTCTGTTTAGAAGCGCTCTTGTCCATTGTGGTGTGGTGTGACTTGGCGTCTCTCACTGGCAATAATGTTTTGGTTTAAACGTGTGTTGTTTGGCAGATAATTTTGGGATCATCTTCAGAGGCGCGTAGAAAAGTATTATCTGAGATGGGCTATGAATTCACCATTATGGTATTTTCTACGCAGATGTACTTACATGACCTGAAAACTTTCCATTCTCAGATATTGGTTTAACTATTCTATCTCAAAATGAAGTCTGCAGATATTGATGAGAAAGCCATTCGCAAAGAAAAGCCGGAAGAATTGGTCGTGGCTCTTGCAGAAGCAAAGGTCAGGTATCATCTCGCGGTTCATTCGTTCTACACCGTATTCTGTGTTTCACAACTTCAGTACTGGGTTTGGTACGGTAGTTGGTGATTTTGGCTTTATTCCTTAGCTGATAGATATTTATTGTCAGGCAGAAGCCATCTTAGGAAGACTCTCCATCGATGATTTTAAGAAGGACGCAGAGCCCACTCTATTGATTACTTCTGATCAAGTATATATTTCATGTCCTTTGACATCGGTCCGGTTTTATATGTTTTAAGTGATCTTAATCTTCGATTTCAACCGCATGGAAAAAATCACTGTACAATGTTCATTGCACGTCTCTTTCTACCTGACTCAGCAACGAGAGTAAGGGATTTGTTGCCTTCAAAATTGGCATATTGAATTTTCTTAGCATTTCTAAACTGATCAGAATCTTAGACATTTCTAATATTTTTAATTATTTGCATCTCTAAAACTGTTCTTGTCCTAAAATGAAAGAGGATTATAAAAAGTTAATTAGAATGATTTTCATGTCTGACATCAATTTCTTTCTCTTTCTTAATATTTTGTGATTTGCTAGAAACTTTCTTGAATCAATGAGCCGATAATGGCAAGTAGATGCTCAATGGCCTTTCCACAGTTTCTGTCCCCTTCACTAATAACCGAATAAGTATATTACCAATCCCATTTGAAAGACCTGCCGCCACTTGCTATGCCCTTGTTGTACTCATTTACCTTGAGATAGATATTATGGAACGGTTTGCTTATATTTTGGTTCTTAGCCCCGTTGCGTATTGTATCCTAAAAACATAAATGATCTTTTCTTGATAACCCATACCATTCCACATTTTCTTGTTCTCTTTGCAAAGTTCCTCTTAGACACGCTATCTTACTTCTATTGGTAATCAATGTGGAGGTGGTGATCTATGAAGGTGTCGTCAGAGAAAAACCTGGCAGTAAGGAGGAAGCGCGACAATTTATTAAAGGTTTGTTTATATAATAGTAATGCTTCTCTATTTTATTTACTATTTCTGGAATGTTTTAGTTCGCAATGTTTTTTGTTGCAGATTACTCAGGAGGGCATGCAGCAACACTCGGATCCTTACTTGTTACAAACCTTAAAACAGGATTTAGGAAAGGAGAATGGGATCGGGTGGAGGTATATACATACATATATATATATATATATATATATATATTTGTATTTCTTTTGATGATCTTTATATTTCTCATTTACGAGTACACGTATGTGCGCTGTGTTGTGGGACCAGCAGAATATAAGCTAAATACTGTTATTTTAAAATCGAGGGAAGGAGCTTCGTGTTCTGCTTCTATCCAATATTGATTTTCTGATTCCTAGCAACTGATAGATGGCTTCTAGAAGATTTTGATTCCTAGCACACGTTTCTTTGTTTTCTTATGTCATTCGATATTGACGCGCGCTCTTATCTTGCAGATCTATTTCCATGAAATACCTGATGAAGTCATTGACAAGCTGGTAGAGATTTCGCTTTATAACTGGTTGTTGGTCGTGTTTTCATTAGGAAGATAAACTTTTGTACCTTTTGTCACCTTGATTTTTTTTTTCCCCTATACATTTCAGATCGAGGAGGGGGATGTGCTGTATGTTGCCGGTGGGCTGTTAATCGAGAATCCTTTGATTTTACCCTATGTGAAAGAAGTGGTTAGTTTCCCTTCTTTCTATACTATTGAGTTTATTCTGTATGAACCCGAAACATATCACCAACAAATCGGTTGGGACAATCACAATTGTGTCCATCGTTTCAATTTATAGTAGAGATAAATTACGGATTTTGGGTCTCTGCAGGTAGGGACGACGGACAGTGTGATGGGACTTCCTAAGGCTCTGACTGAGAAACTTTTGAAGGAAGCCATTTTAGGTGCTATGGATAATTAATCACACATTTCACCTCTATCTTATTTTCTAATCAATGAACGATGATGTTTTGACGTACGTAGATCAAACACCTGAATTGATGAACCAATCAAATAATTAGGCAACAAGTTCAAGAAACTGGCACAAACTGTGCTAGTATTACAATGATACTACAAAGACAAGGGGATTTCAGAGCTTTAAGACACTGGTATTTTTATATATTGAGGGACAATATGCATATTTACTATTTTGCAGCGCAGTGTAGGAGGATGGGTTTCTTTCCAACACAGGCGGGGTATCAAAGAGAAACTAACAAAAACAACCTTCTTATCTGAAGGAGAACTGAATTTCTTCCAGTGTTCTTCCTTTCGTCTCGGGGA AGACAATTTTCGTCCCGCCGAGAGAAGATAGTAGAGCTATCTGCTAGAGACGCTGGTACATCGATTCGAGTTAACGCGCCATTCATCAGTAATCTGTTACGAGCTTCAGCTTTCAACTGATCGGCGATGCAGGGAGTTATGGAAGCTAATTTGTCTTCGTTTAAGATAATTTTGGGATCATCTTCAGAGGCGCGTAGAAAAGTATTATCTGAGATGGGCTATGAATTCACCATTATGTCTGCAGATATTGATGAGAAAGCCATTCGCAAAGAAAAGCCGGAAGAATTGGTCGTGGCTCTTGCAGAAGCAAAGGTCAGGTATCATCTCGCGGTTCATTCGTTCTACACCGTATTCTGTGTTTCACAACTTCAGTACTGGGCAGAAGCCATCTTAGGAAGACTCTCCATCGATGATTTTAAGAAGGACGCAGAGCCCACTCTATTGATTACTTCTGATCAAGTATATATTTCATGTCCTTTGACATCGGTCCGACACGCTATCTTACTTCTATTGGTAATCAATGTGGAGGTGGTGATCTATGAAGGTGTCGTCAGAGAAAAACCTGGCAGTAAGGAGGAAGCGCGACAATTTATTAAAGATTACTCAGGAGGGCATGCAGCAACACTCGGATCCTTACTTGTTACAAACCTTAAAACAGGATTTAGGAAAGGAGAATGGGATCGGGTGGAGATCTATTTCCATGAAATACCTGATGAAGTCATTGACAAGCTGGTAGAGATTTCGCTTTATAACTGGTTGTTGATCGAGGAGGGGGATGTGCTGTATGTTGCCGGTGGGCTGTTAATCGAGAATCCTTTGATTTTACCCTATGTGAAAGAAGTGGTAGGGACGACGGACAGTGTGATGGGACTTCCTAAGGCTCTGACTGAGAAACTTTTGAAGGAAGCCATTTTAGGTGCTATGGATAATTAATCACACATTTCACCTCTATCTTATTTTCTAATCAATGAACGATGATGTTTTGACGTACGTAGATCAAACACCTGAATTGATGAACCAATCAAATAATTAGGCAACAAGTTCAAGAAACTGGCACAAACTGTGCTAGTATTACAATGATACTACAAAGACAAGGGGATTTCAGAGCTTTAAGACACTGGTATTTTTATATATTGAGGGACAATATGCATATTTACTATTTTGCAGCGCAGTGTAGGAGGATGGGTTTCTTTCCAACACAGGCGGGGTATCAAAGAGAAACTAACAAAAACAACCTTCTTATCTGAAGGAGAACTGAATTTCTTCCAGTGTTCTTCCTTTCGTCTCGGGGA ATGCAGGGAGTTATGGAAGCTAATTTGTCTTCGTTTAAGATAATTTTGGGATCATCTTCAGAGGCGCGTAGAAAAGTATTATCTGAGATGGGCTATGAATTCACCATTATGTCTGCAGATATTGATGAGAAAGCCATTCGCAAAGAAAAGCCGGAAGAATTGGTCGTGGCTCTTGCAGAAGCAAAGGTCAGGTATCATCTCGCGGTTCATTCGTTCTACACCGTATTCTGTGTTTCACAACTTCAGTACTGGGCAGAAGCCATCTTAGGAAGACTCTCCATCGATGATTTTAAGAAGGACGCAGAGCCCACTCTATTGATTACTTCTGATCAAGTATATATTTCATGTCCTTTGACATCGGTCCGACACGCTATCTTACTTCTATTGGTAATCAATGTGGAGGTGGTGATCTATGAAGGTGTCGTCAGAGAAAAACCTGGCAGTAAGGAGGAAGCGCGACAATTTATTAAAGATTACTCAGGAGGGCATGCAGCAACACTCGGATCCTTACTTGTTACAAACCTTAAAACAGGATTTAGGAAAGGAGAATGGGATCGGGTGGAGATCTATTTCCATGAAATACCTGATGAAGTCATTGACAAGCTGGTAGAGATTTCGCTTTATAACTGGTTGTTGATCGAGGAGGGGGATGTGCTGTATGTTGCCGGTGGGCTGTTAATCGAGAATCCTTTGATTTTACCCTATGTGAAAGAAGTGGTAGGGACGACGGACAGTGTGATGGGACTTCCTAAGGCTCTGACTGAGAAACTTTTGAAGGAAGCCATTTTAGGTGCTATGGATAATTAA MQGVMEANLSSFKIILGSSSEARRKVLSEMGYEFTIMSADIDEKAIRKEKPEELVVALAEAKVRYHLAVHSFYTVFCVSQLQYWAEAILGRLSIDDFKKDAEPTLLITSDQVYISCPLTSVRHAILLLLVINVEVVIYEGVVREKPGSKEEARQFIKDYSGGHAATLGSLLVTNLKTGFRKGEWDRVEIYFHEIPDEVIDKLVEISLYNWLLIEEGDVLYVAGGLLIENPLILPYVKEVVGTTDSVMGLPKALTEKLLKEAILGAMDN
BLAST of Carg17148-RA vs. NCBI nr
Match: XP_022940510.1 (maf-like protein DDB_G0281937 [Cucurbita moschata]) HSP 1 Score: 375.6 bits (963), Expect = 1.5e-100 Identity = 212/268 (79.10%), Postives = 213/268 (79.48%), Query Frame = 0
BLAST of Carg17148-RA vs. NCBI nr
Match: XP_023525028.1 (maf-like protein DDB_G0281937 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 347.8 bits (891), Expect = 3.2e-92 Identity = 197/258 (76.36%), Postives = 201/258 (77.91%), Query Frame = 0
BLAST of Carg17148-RA vs. NCBI nr
Match: XP_022981331.1 (maf-like protein DDB_G0281937 [Cucurbita maxima]) HSP 1 Score: 343.2 bits (879), Expect = 8.0e-91 Identity = 198/258 (76.74%), Postives = 200/258 (77.52%), Query Frame = 0
BLAST of Carg17148-RA vs. NCBI nr
Match: XP_008466562.1 (PREDICTED: maf-like protein DDB_G0281937 isoform X3 [Cucumis melo]) HSP 1 Score: 327.4 bits (838), Expect = 4.5e-86 Identity = 185/258 (71.71%), Postives = 196/258 (75.97%), Query Frame = 0
BLAST of Carg17148-RA vs. NCBI nr
Match: XP_022132611.1 (maf-like protein DDB_G0281937 isoform X3 [Momordica charantia]) HSP 1 Score: 325.9 bits (834), Expect = 1.3e-85 Identity = 185/258 (71.71%), Postives = 196/258 (75.97%), Query Frame = 0
BLAST of Carg17148-RA vs. TAIR10
Match: AT5G42770.2 (Maf-like protein) HSP 1 Score: 245.0 bits (624), Expect = 5.4e-65 Identity = 144/262 (54.96%), Postives = 175/262 (66.79%), Query Frame = 0
BLAST of Carg17148-RA vs. TAIR10
Match: AT5G66550.1 (Maf-like protein) HSP 1 Score: 218.0 bits (554), Expect = 7.0e-57 Identity = 122/253 (48.22%), Postives = 159/253 (62.85%), Query Frame = 0
BLAST of Carg17148-RA vs. TAIR10
Match: AT2G25500.1 (Inosine triphosphate pyrophosphatase family protein) HSP 1 Score: 89.0 bits (219), Expect = 4.9e-18 Identity = 56/135 (41.48%), Postives = 76/135 (56.30%), Query Frame = 0
BLAST of Carg17148-RA vs. Swiss-Prot
Match: sp|Q54TC5|MAFL2_DICDI (Maf-like protein DDB_G0281937 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0281937 PE=3 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 8.9e-25 Identity = 78/252 (30.95%), Postives = 132/252 (52.38%), Query Frame = 0
BLAST of Carg17148-RA vs. Swiss-Prot
Match: sp|Q5QZ35|Y1346_IDILO (Maf-like protein IL1346 OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) OX=283942 GN=IL1346 PE=3 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 4.9e-07 Identity = 48/192 (25.00%), Postives = 81/192 (42.19%), Query Frame = 0
BLAST of Carg17148-RA vs. Swiss-Prot
Match: sp|Q97JN3|Y1240_CLOAB (Maf-like protein CA_C1240 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) OX=272562 GN=CA_C1240 PE=3 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 3.2e-06 Identity = 58/247 (23.48%), Postives = 100/247 (40.49%), Query Frame = 0
BLAST of Carg17148-RA vs. Swiss-Prot
Match: sp|A6TQH7|Y2288_ALKMQ (Maf-like protein Amet_2288 OS=Alkaliphilus metalliredigens (strain QYMF) OX=293826 GN=Amet_2288 PE=3 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 1.2e-05 Identity = 49/238 (20.59%), Postives = 98/238 (41.18%), Query Frame = 0
BLAST of Carg17148-RA vs. Swiss-Prot
Match: sp|Q47VG7|Y4557_COLP3 (Maf-like protein CPS_4557 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) OX=167879 GN=CPS_4557 PE=3 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 2.1e-05 Identity = 50/186 (26.88%), Postives = 91/186 (48.92%), Query Frame = 0
BLAST of Carg17148-RA vs. TrEMBL
Match: tr|A0A1S3CRK8|A0A1S3CRK8_CUCME (maf-like protein DDB_G0281937 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103503944 PE=4 SV=1) HSP 1 Score: 327.4 bits (838), Expect = 3.0e-86 Identity = 185/258 (71.71%), Postives = 196/258 (75.97%), Query Frame = 0
BLAST of Carg17148-RA vs. TrEMBL
Match: tr|A0A0A0LDW9|A0A0A0LDW9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G857040 PE=4 SV=1) HSP 1 Score: 325.5 bits (833), Expect = 1.1e-85 Identity = 184/258 (71.32%), Postives = 196/258 (75.97%), Query Frame = 0
BLAST of Carg17148-RA vs. TrEMBL
Match: tr|A0A1S3CRP6|A0A1S3CRP6_CUCME (maf-like protein DDB_G0281937 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503944 PE=4 SV=1) HSP 1 Score: 320.5 bits (820), Expect = 3.7e-84 Identity = 184/264 (69.70%), Postives = 196/264 (74.24%), Query Frame = 0
BLAST of Carg17148-RA vs. TrEMBL
Match: tr|A0A1S3CSV1|A0A1S3CSV1_CUCME (maf-like protein DDB_G0281937 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503944 PE=4 SV=1) HSP 1 Score: 302.8 bits (774), Expect = 7.9e-79 Identity = 174/259 (67.18%), Postives = 191/259 (73.75%), Query Frame = 0
BLAST of Carg17148-RA vs. TrEMBL
Match: tr|E0CQD4|E0CQD4_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g12540 PE=4 SV=1) HSP 1 Score: 302.0 bits (772), Expect = 1.3e-78 Identity = 164/263 (62.36%), Postives = 201/263 (76.43%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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