Carg17010-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TACTTATTGCTGTTCCGTGGACGAAATAATTATGAGGGAAAAGAGAGGAGAGGAGAGGAGACGAACCCAACCAAAAATTTCTGCAGATCTTCTTCAACAATCAACCATCCATTTGGTTCCGCACTATGAGCACCGTTGTTCCTCCATATTCCTTATGGCGCTCCGGCGACGCCATTTCCAGGTTCAACGCTTCTCCTCGTGGAACTTCACTTCTTAATCCCAAGTTTCTTCGCTCAAACCACCCTCGTGCGGCTCTTGTTGAGGCCAGACCTACGGCTCTGCCTGCGGTTAACGGCGATACCTCCCTGCCCACTCAACTGGTTTTGGCTGTCGATCGGACTGATGATTTGCAGGCGGAGGCCAGGGCGATGGCGCGTGCTGCTAACGCTCCTTTCTACAGTCCGGACCTTATTGCCAATACGTACGGTTCTCGCCCAATTGAGGTTTTCTTCGCCCAAATTGCTCTACCTCTACCTCTACCTCTGCCTCTACCTCCTTTAGAGTTTAATCGAATGTCTTGACCAAAATTTCCAGATATTGCGGAGGTCTCTGCAAATTTTGGTTGCGCTTAGCTCTTTTGGCATCAAATTGTGGTTGGACAAAAACAGTGGCCAACTCGATCAAAATAAAAGGCGGCGAGCTGCTGAGCTGCGACGAATTTTTACTCGATTAGGTCCTACTTTCGTGAAATTAGGTCAGGGATTGTCCACCAGGCCAGACATCTGCCCTCCCGAGTACCTTGAGGAGCTTTCTGAACTCCAAGTGTGTTATCCCCATTTCTTTTCTCCTTCCATTTCACCATCGCATGCCTACTTAATTGATCAAATATCTTTTTTCTTCTAG TACTTATTGCTGTTCCGTGGACGAAATAATTATGAGGGAAAAGAGAGGAGAGGAGAGGAGACGAACCCAACCAAAAATTTCTGCAGATCTTCTTCAACAATCAACCATCCATTTGGTTCCGCACTATGAGCACCGTTGTTCCTCCATATTCCTTATGGCGCTCCGGCGACGCCATTTCCAGGTTCAACGCTTCTCCTCGTGGAACTTCACTTCTTAATCCCAAGTTTCTTCGCTCAAACCACCCTCGTGCGGCTCTTGTTGAGGCCAGACCTACGGCTCTGCCTGCGGTTAACGGCGATACCTCCCTGCCCACTCAACTGGTTTTGGCTGTCGATCGGACTGATGATTTGCAGGCGGAGGCCAGGGCGATGGCGCGTGCTGCTAACGCTCCTTTCTACAGTCCGGACCTTATTGCCAATACGTACGGTTCTCGCCCAATTGAGATATTGCGGAGGTCTCTGCAAATTTTGGTTGCGCTTAGCTCTTTTGGCATCAAATTGTGGTTGGACAAAAACAGTGGCCAACTCGATCAAAATAAAAGGCGGCGAGCTGCTGAGCTGCGACGAATTTTTACTCGATTAGGTCCTACTTTCGTGAAATTAGGTCAGGGATTGTCCACCAGGCCAGACATCTGCCCTCCCGAGTACCTTGAGGAGCTTTCTGAACTCCAAGTGTGTTATCCCCATTTCTTTTCTCCTTCCATTTCACCATCGCATGCCTACTTAATTGATCAAATATCTTTTTTCTTCTAG ATGAGCACCGTTGTTCCTCCATATTCCTTATGGCGCTCCGGCGACGCCATTTCCAGGTTCAACGCTTCTCCTCGTGGAACTTCACTTCTTAATCCCAAGTTTCTTCGCTCAAACCACCCTCGTGCGGCTCTTGTTGAGGCCAGACCTACGGCTCTGCCTGCGGTTAACGGCGATACCTCCCTGCCCACTCAACTGGTTTTGGCTGTCGATCGGACTGATGATTTGCAGGCGGAGGCCAGGGCGATGGCGCGTGCTGCTAACGCTCCTTTCTACAGTCCGGACCTTATTGCCAATACGTACGGTTCTCGCCCAATTGAGATATTGCGGAGGTCTCTGCAAATTTTGGTTGCGCTTAGCTCTTTTGGCATCAAATTGTGGTTGGACAAAAACAGTGGCCAACTCGATCAAAATAAAAGGCGGCGAGCTGCTGAGCTGCGACGAATTTTTACTCGATTAGGTCCTACTTTCGTGAAATTAGGTCAGGGATTGTCCACCAGGCCAGACATCTGCCCTCCCGAGTACCTTGAGGAGCTTTCTGAACTCCAAGTGTGTTATCCCCATTTCTTTTCTCCTTCCATTTCACCATCGCATGCCTACTTAATTGATCAAATATCTTTTTTCTTCTAG MSTVVPPYSLWRSGDAISRFNASPRGTSLLNPKFLRSNHPRAALVEARPTALPAVNGDTSLPTQLVLAVDRTDDLQAEARAMARAANAPFYSPDLIANTYGSRPIEILRRSLQILVALSSFGIKLWLDKNSGQLDQNKRRRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQVCYPHFFSPSISPSHAYLIDQISFFF
BLAST of Carg17010-RA vs. NCBI nr
Match: XP_022931712.1 (protein ACTIVITY OF BC1 COMPLEX KINASE 3, chloroplastic [Cucurbita moschata]) HSP 1 Score: 357.5 bits (916), Expect = 3.2e-95 Identity = 182/188 (96.81%), Postives = 182/188 (96.81%), Query Frame = 0
BLAST of Carg17010-RA vs. NCBI nr
Match: XP_022969407.1 (protein ACTIVITY OF BC1 COMPLEX KINASE 3, chloroplastic [Cucurbita maxima]) HSP 1 Score: 343.2 bits (879), Expect = 6.2e-91 Identity = 174/188 (92.55%), Postives = 178/188 (94.68%), Query Frame = 0
BLAST of Carg17010-RA vs. NCBI nr
Match: XP_023530918.1 (protein ACTIVITY OF BC1 COMPLEX KINASE 3, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 343.2 bits (879), Expect = 6.2e-91 Identity = 173/188 (92.02%), Postives = 179/188 (95.21%), Query Frame = 0
BLAST of Carg17010-RA vs. NCBI nr
Match: XP_004135575.1 (PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Cucumis sativus] >KGN65997.1 hypothetical protein Csa_1G560790 [Cucumis sativus]) HSP 1 Score: 305.1 bits (780), Expect = 1.9e-79 Identity = 155/188 (82.45%), Postives = 168/188 (89.36%), Query Frame = 0
BLAST of Carg17010-RA vs. NCBI nr
Match: XP_008450502.1 (PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Cucumis melo]) HSP 1 Score: 297.0 bits (759), Expect = 5.1e-77 Identity = 154/188 (81.91%), Postives = 166/188 (88.30%), Query Frame = 0
BLAST of Carg17010-RA vs. TAIR10
Match: AT1G79600.1 (Protein kinase superfamily protein) HSP 1 Score: 169.1 bits (427), Expect = 2.9e-42 Identity = 97/182 (53.30%), Postives = 121/182 (66.48%), Query Frame = 0
BLAST of Carg17010-RA vs. TAIR10
Match: AT1G71810.1 (Protein kinase superfamily protein) HSP 1 Score: 71.6 bits (174), Expect = 6.3e-13 Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 0
BLAST of Carg17010-RA vs. TAIR10
Match: AT3G24190.1 (Protein kinase superfamily protein) HSP 1 Score: 70.5 bits (171), Expect = 1.4e-12 Identity = 36/91 (39.56%), Postives = 53/91 (58.24%), Query Frame = 0
BLAST of Carg17010-RA vs. TAIR10
Match: AT5G64940.1 (ABC2 homolog 13) HSP 1 Score: 58.2 bits (139), Expect = 7.2e-09 Identity = 36/90 (40.00%), Postives = 51/90 (56.67%), Query Frame = 0
BLAST of Carg17010-RA vs. TAIR10
Match: AT5G24970.2 (Protein kinase superfamily protein) HSP 1 Score: 57.8 bits (138), Expect = 9.4e-09 Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 0
BLAST of Carg17010-RA vs. Swiss-Prot
Match: sp|Q9MA15|AB1K3_ARATH (Protein ACTIVITY OF BC1 COMPLEX KINASE 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ABC1K3 PE=1 SV=1) HSP 1 Score: 169.1 bits (427), Expect = 5.2e-41 Identity = 97/182 (53.30%), Postives = 121/182 (66.48%), Query Frame = 0
BLAST of Carg17010-RA vs. Swiss-Prot
Match: sp|Q55680|Y005_SYNY3 (Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll0005 PE=3 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 8.1e-18 Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = 0
BLAST of Carg17010-RA vs. Swiss-Prot
Match: sp|P73121|Y1919_SYNY3 (Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1919 PE=3 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 2.6e-16 Identity = 44/98 (44.90%), Postives = 66/98 (67.35%), Query Frame = 0
BLAST of Carg17010-RA vs. Swiss-Prot
Match: sp|Q94BU1|Y1181_ARATH (Uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g71810 PE=1 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 1.1e-11 Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 0
BLAST of Carg17010-RA vs. Swiss-Prot
Match: sp|Q46189|YHG1_CLOPA (Uncharacterized protein in hydrogenase 1 5'region (Fragment) OS=Clostridium pasteurianum OX=1501 PE=3 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 1.0e-07 Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 0
BLAST of Carg17010-RA vs. TrEMBL
Match: tr|A0A0A0LYV6|A0A0A0LYV6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560790 PE=4 SV=1) HSP 1 Score: 305.1 bits (780), Expect = 1.2e-79 Identity = 155/188 (82.45%), Postives = 168/188 (89.36%), Query Frame = 0
BLAST of Carg17010-RA vs. TrEMBL
Match: tr|A0A1S3BPB5|A0A1S3BPB5_CUCME (uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492088 PE=4 SV=1) HSP 1 Score: 297.0 bits (759), Expect = 3.4e-77 Identity = 154/188 (81.91%), Postives = 166/188 (88.30%), Query Frame = 0
BLAST of Carg17010-RA vs. TrEMBL
Match: tr|V4U411|V4U411_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10004461mg PE=4 SV=1) HSP 1 Score: 209.5 bits (532), Expect = 7.1e-51 Identity = 109/149 (73.15%), Postives = 124/149 (83.22%), Query Frame = 0
BLAST of Carg17010-RA vs. TrEMBL
Match: tr|V4S563|V4S563_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10004461mg PE=4 SV=1) HSP 1 Score: 209.5 bits (532), Expect = 7.1e-51 Identity = 109/149 (73.15%), Postives = 124/149 (83.22%), Query Frame = 0
BLAST of Carg17010-RA vs. TrEMBL
Match: tr|A0A2H5P8D9|A0A2H5P8D9_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_113120 PE=4 SV=1) HSP 1 Score: 209.5 bits (532), Expect = 7.1e-51 Identity = 109/149 (73.15%), Postives = 124/149 (83.22%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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