Carg16743-RA (mRNA) Silver-seed gourd

NameCarg16743-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_087 : 244683 .. 245209 (+)
Sequence length440
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCACCTACAGCTTTGGTTGCTTGGAAGAAGGTTGCCTTCTTGGGTTTCCTTCTTATTGCTGTCAGTGTTTCTGCAAGAGAACTTGCTGGGGCTAACGTTGTCACACGCACAGCCCGTAAGTCCGTTTAAGCTTTTGAGTTAATAAGTGATTTAACTGTTCTTTTCATGAGGCTTTTATCACTTTTTGTGTTCGAGTCAACAGGTGAGATGGCGACGATGCCCAATGGTGTGATAGTAGGCAGCAGATTAATAGCTCGACAATTGGATACCGCTTGGAGAGGACATTATTCTCCTCCTCCTCCTCGTTCTCCTCCTCCTCCTCCCCATTCCTCCTAAGGGCAAGGTCTTGAGGTCTGTTAGTGTATTTTATCTTTAGTTACCCTTCTTTGCCCTTTTGGTGGGTTTGGATAATAAGGATGTCTGATCTTCAAGTTTTATGAATTTCTTTTCCTGCAAGGTTGTGGCCTTTAAAGGCGTGGTGTGTTTGTGTCGTTGGAGTTAAATTCAAGCTTAATAATCAG

mRNA sequence

ATGGCTTCACCTACAGCTTTGGTTGCTTGGAAGAAGGTTGCCTTCTTGGGTTTCCTTCTTATTGCTGTCAGTGTTTCTGCAAGAGAACTTGCTGGGGCTAACGTTGTCACACGCACAGCCCGTGAGATGGCGACGATGCCCAATGGTGTGATAGTAGGCAGCAGATTAATAGCTCGACAATTGGATACCGCTTGGAGAGGACATTATTCTCCTCCTCCTCCTCGTTCTCCTCCTCCTCCTCCCCATTCCTCCTAAGGGCAAGGTCTTGAGGTCTGTTAGTGTATTTTATCTTTAGTTACCCTTCTTTGCCCTTTTGGTGGGTTTGGATAATAAGGATGTCTGATCTTCAAGTTTTATGAATTTCTTTTCCTGCAAGGTTGTGGCCTTTAAAGGCGTGGTGTGTTTGTGTCGTTGGAGTTAAATTCAAGCTTAATAATCAG

Coding sequence (CDS)

ATGGCTTCACCTACAGCTTTGGTTGCTTGGAAGAAGGTTGCCTTCTTGGGTTTCCTTCTTATTGCTGTCAGTGTTTCTGCAAGAGAACTTGCTGGGGCTAACGTTGTCACACGCACAGCCCGTGAGATGGCGACGATGCCCAATGGTGTGATAGTAGGCAGCAGATTAATAGCTCGACAATTGGATACCGCTTGGAGAGGACATTATTCTCCTCCTCCTCCTCGTTCTCCTCCTCCTCCTCCCCATTCCTCCTAA

Protein sequence

MASPTALVAWKKVAFLGFLLIAVSVSARELAGANVVTRTAREMATMPNGVIVGSRLIARQLDTAWRGHYSPPPPRSPPPPPHSS
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg16743Carg16743gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg16743-RA.exon.1Carg16743-RA.exon.1exon
Carg16743-RA.exon.2Carg16743-RA.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg16743-RA.CDS.1Carg16743-RA.CDS.1CDS
Carg16743-RA.CDS.2Carg16743-RA.CDS.2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg16743-RA.three_prime_UTR.1Carg16743-RA.three_prime_UTR.1three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg16743-RACarg16743-RA-proteinpolypeptide


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..84