Carg16436-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAGTTTCTCAGTTCCGGCTAGGAAGCCTCTTATCAACGAAGAAGAAGAAGAAGCTTTCAATCGAGAAAAATGGTGGCTTCTAATGTGAAATCGGAGACCATTGGTCTGATGGAGAAGAGGAGCGCTATTGAGGCACAGATGGATGCCATCATTTCCCGCCTTTCTCAGCCTGGCGGTCCTGGACTCTCTGGAAATCTCGTCGACTCTGAGGTGATTGCGAATTGCAAATTGCAATGAAGTCATTTCCCTCAATTTCCGTGAATGAATGAAATTTTGATTGAAATTTATTATAATTCCTATGCTTTCCTGTTTTGCTGATTAGGTTTAAGTGATTTTTCTATTTTGAGCTTGAAAAGAGATTTTGTGGAGTTGCTAATAGCACACAATTGCGTTTTATTCTCAATTCATTTGCTATTGCTAAGTTGTGCTTAAAAGCATCGGAATATTGAGCATGATTGACTTCGAAAGTTGCTTGGATTAGGAGTATATTATCAATGTGTTGTTTAGAACTTACCTTGTTCCCTAAATTTTTGCAGGGGTTTCCTCGATCAGATATTGACATTCCAGTTATTCTGTCCGAGAGGCGTCGGCTTAGTGGTAGAGTGTTCTAATCTTTTCATTATAGACATAGTTTTAGTTATGGTGTGCCAAAGTGCATTTTAAATTAACAGAGTAATAATTGATAGTAATACATTTTATGAAGTAGGTACGAAATCCCCGCGACGGTATCTTTAATCTTAAGAGTGATAGGATACCATAATCCATGTAAGTTTTGGATCATCCTAAGTTGGGGATGTGTTCTTCTCTTTTTGCTGCTTAGGTGTATAAGGGTTTGAATCAAATGGAATTTATATTTCTTTCCGTTGTTTTTCCATAGTGAGGTATTACTTCTGAATGCCTTTGTAATTCCATTTGGGTTCACAAATACACCTTTGACCTTTCAAGCACGGGGGAATTGAATTTTCCGGCCATTTCAGAACATCCATCTTGGAATTTTTTATGATATTCTAGTCTATATTTCTTCTTGTGATGAACACCTCTATGCAGCGAATTGAGGAAAAGGCCAGTTCACAAAGATAGAATTGAAACCTTGGCCATTGGGTATTAGGAAATGGGGTCGGAGCTGATCAAGTAAAGATCTGAGTTATGATTGAGTGGTTGGCTCCATGAAACATACGTACATTACACAGATTCTTGGAGCTGACCAAGTACTAACGAAGATTCGTTATGAATTATGGAATAGTCACTCCATTATCCCAATTGCTTAAATAGAGAGCCTTTGAATGGTCTCAACAAGCTACTGAGGCCTTTGAGCAATTGAAACGTGTATGGTCACATTGCCAGTGTTGGTATTATCTGATTCAACTAGTTGTTTGTGGTGGAGACCGATGTATCTGACACAGGCTTGGGAGCAATACTATATGAGAAGAAACACCCTATTTGCTTTCTTTAGTCACAATTTATCAGCCAAACTGCAAGCTAAATCAATTTATAAGCGTGAATGAATGGCCATAGTTTTAGTGTTTGAGTAATGACAACCCTATCTCCTTGGTCAAAAGTTCATCGTGAAAACGAATTAGAAGGCTTCGATGTTTTTGCTCAAGTAGAGAGTGTTGCAACCGTAGTATCAACAATGGATAAGCTCTTGGGATACAATTTCAAGGTATGATATAAACCAGGTTCTGAAAGTAAGGTGGTTGATTCTCCTTTACATCTGCCACCAACAGTTCATTTAGCTGACTTATTGGTACCTGTCATTCTTGACGTTGATGTGGTAAAAAAAAGGAAAGAGGTACTTGATGATCCCAAACTCAGTATGATTATCCAATAGTTATTGGAAGATGAGGAGTGTGCCAAGGTATTGGTTATCCCAAGGCTGACTATTATACAAAGCGAGGTTAGTCCTAGCCTCAAACTCTTCGCTTCTTCCTACAGTTTTACAAACTTTTCATGAATTTGGGTTGGGAGGTCATTCAAGGTTTCTAAGAACTTATAAACGGTTGACTAGTGAACTCTATTGGGATGGAATGAAAGGGACATCCAAGAAATATGTGGAAGAATGTTTGATTTGTCAGAAGAACAAATCCATGACCACTTCTCCAACTAGTCTACTTTTGCCTCTTGAGATTGTAGATATCTCGATGGACCTCACCGGTATGAATGTGATCGTAGTGGTTGATGTATTAAGCAAAGAAGCCCATTTTATTGCCATGAAGCACCCGTATACAGTCAATTCAGTGGCTGAAGTTTTTATAAGATAAGTGGTGAGATTCCATGGTTATCCTCATTCAATGGTTTCTGAGCCATGATAAAATCTGATCAGCCACTTCTGGACAGAATTGCTCCAATTGCAAGGTACTAAGCTTTGCCGAAGTACTTCCTATCATCCATGGCCGGACAACCAAACTGAAATTGTGAATAAGTGTGTTGAAACATATTTGTGTTGCTTCTGTGGGGGAAAGCCCGTAACAGTGGGTCACATGGTTAAGTTGGGCGGGGTTTGGTACAATACGACATTCCATATCTCTACCGAAATCACATTGTTTCAGGATGTGTAGTTGGGGAGTGATGTTAGGCTCCTAATTACGAAGTGTTATTTTAGGAGGGGGAAGAGGGTCAATACATCTCTAACCAGTTAGTTAGGGAATGTTTGTTATTTGCAGGGACCACCTGAAGGGTGAGGAATGTTGGAGGGATGAGAGGTGTCTAACAATATTTCGGCTGGGAGTATTGTATTGCCAAGGAGCAAATGTTTTCCTCTGAATATAAATGTATTTTAAGGGGATATCTTACACATTTCCGACATAATTATTATACATCGAAGTGTTGACTTGTTATTCTATTATTTGTAGAGCTGAGGAATGACCACACGGAGATCACAGAAAAGATCAATCAGAACATTCAAATTTTGCATTCTGCGAAGCCTGCTTCCAGCTTGTCACTTTCTAGGGATGCAGGTAACTGTGAGGTAGATGTTATGCTTCTGAATGACAGATGTCGTTTATCTTTACGAGTTACATGCCTCGGTATGTTTTTTTTAACAAGAAGCAAAGTACATGTCTCAATTGCAGCTACACTAGAATTTCTGTCCCATAGTTAACTAATTCAGGGAGAGGTCAACACTTGTACAACTTTGATTCTGCTTTGTTTTACAAAGGTGTTAGAATGGATCTTCGTATGTAATTCGTTCCGTTGACTAATTTCCTTACGTAATTATATGTTTATGTTAACAAGCCGCACCAAACCCTAAATATGTGGGGTGAGGTGTTGTGAGGATTATATGAAGTTAATTCTCAGAAATTTGGAAATTAGCTTTATTTTCCAACTGTTGAAAATGTTGCGAAGGTTCTATCTTTGTCATATGCAACAGAATGAGATGCTATTGAATGAACATGTGATTTCTTCTTTGTTACTCCTATAAAAAATTTTGATGCTATAAAAAGGGGAAAGTATAGTTTGGAGAATTTAGAGAGGAAGAGGAGACTATAAGGAAAACAAGGAGTGGCCAGGAAGGGTAAAGAGGATCTTTAAGGAGAAAAGAGGGCTCAGGTTTATGTAGTAAGTAATCGATGATAATATCTAGGGACTACAATAGTATTTGTGGAGATTTTAAAAATACCCTAATATATACCGGGAAATTCACCATTATGCCACTAAATGATTAGGTGAAAACTAATAGTTCTTCTTCTTGGTATTTAGGGATTTGACGAAGGTTCTTGAATTTTTGAGATAGGTGTAGAGTGAGATGTAGCAAGATTCTTAGTGTCTAATTGTTGTGTCCTCCCTAACATTTTTTTCTGACTATTTTCTGTGAGATCCCACGTCCGTCAGGGAGGAGAACGAAGCAGTAAGGGTGTGGAAACCTCTCTCTAGTAGACACATTTTAAAAACCTTGAGGGAAAACCCATAAAGAAAAGTCTAAAGAGGACAATATCTGCTAGCGGTGAACTTGGGTCGTTACAAATGGTATCAGAGCCAAACACCGGGCAATATGCCAACGATGAGGTTGAGCCCTTAAGGGGGGTGGACACAAGGTGGGGTGCCAACAAGGACGCTGGTCCCTTAAGGGGGTGGATTGGGGGGTTCCACATCGATTGGAGAAGGGAACGAGTGCCAGCGAGGATGCTAGGTCCCGAAGGGTGTAGACTGTGAGATCCCACATCGATCGGAGAGGAGAACGAAGCATTCTTTGTAAGAGTGTAGAAACTTCTCCCTAATAGACGCGTTTTAAAAACCTTGAGGGAAAGCCTGACAGGGAAAACCCAAAAAGGACAATATCTGCTAGCGGTGGGCTTGGGCCGTTACATTTTCCTTCCTTGATTCTTGCCAATTGTAGTACCCCTGTGATGGCTACTTGGCTATGGCCTTCTAGGAGATTTTTTTATCTTTCCCCACGTTCATTGTTTTCTTTTTCAAGAAATTTGTTCCTTTTAAAACAAAGAAATGACAATAGGGAAAACTAAAATATTAAATCCATCACATATGCCTGCCGATTTCACCTATATTAAGTATATATCCTGTACTATAATCACTCTAAGATCTCAAGGTTTTGAAAATTGTCTTAAGATGTATGTGCTGTTTGAATAATCATCTTATTTCATTCAACTATTAGAGAATACAGAGGGTTCAAATGTCACTGTTGCATCCCCAGCCTCAAATGGTATTTCTCAGAGCAACTCTTCCACTACCATGGACATAGATGCGAATGTTAGTATACCTTTTGCCCTGGTTGATGAAATAGCGGATGCATCGCCAGCAGCAGACGATGGATTACAACTCGGTGATCAAGTTCTGAAATTCGGGAACGTCGAGGCTGGTGATGATCTGTTGCATAAGCTTGCCTTTGAAGCCCAGAGTAATCAAGGTCGTCCAATACCTGTTGTAGTTCTGAGGCATGGTACTACACTCAATTTGACTGTGACGCCCAGATCATGGCAAGGCCGAGGCCTTCTTGGGTATGTGCATTGCTTGGCCTTTTTACACTTGCTTAATTCTCAATCAAATTAGCAACATTATTCTTGAGGTAAAAAATGGTTTCTGAGACTCTGAAGAAATTGCCCTTTGACAACGGACACAAAGTTAGTAAACTATGCTATTTAGCCTCCTATTACGGTTTACCATACGTACCATATTTGACTTTTTAGGCAAATATCTTGTATCCATTTATTGCTAAATAGAGTATTTCACCACCATTTAGGTGCGATAGTTTTAGTAAATATTTTCACCATATACTTATTCTTCATCTTTTCTTCTTTTGTTTCCATTTATTTCTAAAGAATTACAAATGTTTACTGCAACCCATTAAGAAACTGCTACTTGTTCTTGTGGGCTTTAGGAATTTAGTAGTTCCCTTTGGAATGATCTGTTGGCTTGACCACGAATTCATTGTCACTGTTACTGCTTGCAGATGCCATTTTCGGATGTTGTAGCTGTCTCTGGCCACAATCTCTGCCTGTCCTTACGGTTGTTGATAAAACGGTACTCACTTCTTCTTTGCTGTTCTACAGGTCCCATGTGATGCATGTTTGACAAATTTATCTTAATGTGTCTGGATTTACAATCCACCCTTCCCCTTTTGTTGTCATTTTGCCTGGAAACTCTATAGATTGAATGAATAGGATAAGTTGAACTTTATGCCACCTTTGGATGCTAAAATATTAGTCAAATTACAACTTTGGGTTAGAATTTACTCATGTTTTAAATATTAGGATTAGTTCCTATGATTTGAGAAACTTTAAAATATAGTTTTTACCGTAGGAGCTATTTATGAGGATTATTCCGAGCCATAGGATCTATTTATGAGGTTTTATCCAATCACAAGAACTATTTATGAGGCTTTATCGAGTCATAACTATGAAGTTTTATGGACAAAATTATAACTTTTAAAATTATAGGGACCCTAAATTTGGCCATAAAGTTCTTAGATTTTTACTTTTACTTTCCATAGCTTGTTTACGTAGGTTAGCTATCTAAATCTGAAACCAACCGATTTCGTTTTACAGATAATATGGGAGAGGAAAGGTCGAGTTGAGGAAGATTATAACGAGTTTTTAATGGGTTGTTTAAGACAATGTGTAAAGTTATTAAGTTCAAAGTTATTTTTTAACCATTCGATCTTTTAAACATGGCTTTGGCCATTATTATATATATATATATCTA CAGTTTCTCAGTTCCGGCTAGGAAGCCTCTTATCAACGAAGAAGAAGAAGAAGCTTTCAATCGAGAAAAATGGTGGCTTCTAATGTGAAATCGGAGACCATTGGTCTGATGGAGAAGAGGAGCGCTATTGAGGCACAGATGGATGCCATCATTTCCCGCCTTTCTCAGCCTGGCGGTCCTGGACTCTCTGGAAATCTCGTCGACTCTGAGGGGTTTCCTCGATCAGATATTGACATTCCAGTTATTCTGTCCGAGAGGCGTCGGCTTAGTGAGCTGAGGAATGACCACACGGAGATCACAGAAAAGATCAATCAGAACATTCAAATTTTGCATTCTGCGAAGCCTGCTTCCAGCTTGTCACTTTCTAGGGATGCAGAGAATACAGAGGGTTCAAATGTCACTGTTGCATCCCCAGCCTCAAATGGTATTTCTCAGAGCAACTCTTCCACTACCATGGACATAGATGCGAATGTTAGTATACCTTTTGCCCTGGTTGATGAAATAGCGGATGCATCGCCAGCAGCAGACGATGGATTACAACTCGGTGATCAAGTTCTGAAATTCGGGAACGTCGAGGCTGGTGATGATCTGTTGCATAAGCTTGCCTTTGAAGCCCAGAGTAATCAAGGTCGTCCAATACCTGTTGTAGTTCTGAGGCATGGTACTACACTCAATTTGACTGTGACGCCCAGATCATGGCAAGGCCGAGGCCTTCTTGGATGCCATTTTCGGATGTTGTAGCTGTCTCTGGCCACAATCTCTGCCTGTCCTTACGGTTGTTGATAAAACGATAATATGGGAGAGGAAAGGTCGAGTTGAGGAAGATTATAACGAGTTTTTAATGGGTTGTTTAAGACAATGTGTAAAGTTATTAAGTTCAAAGTTATTTTTTAACCATTCGATCTTTTAAACATGGCTTTGGCCATTATTATATATATATATATCTA ATGGTGGCTTCTAATGTGAAATCGGAGACCATTGGTCTGATGGAGAAGAGGAGCGCTATTGAGGCACAGATGGATGCCATCATTTCCCGCCTTTCTCAGCCTGGCGGTCCTGGACTCTCTGGAAATCTCGTCGACTCTGAGGGGTTTCCTCGATCAGATATTGACATTCCAGTTATTCTGTCCGAGAGGCGTCGGCTTAGTGAGCTGAGGAATGACCACACGGAGATCACAGAAAAGATCAATCAGAACATTCAAATTTTGCATTCTGCGAAGCCTGCTTCCAGCTTGTCACTTTCTAGGGATGCAGAGAATACAGAGGGTTCAAATGTCACTGTTGCATCCCCAGCCTCAAATGGTATTTCTCAGAGCAACTCTTCCACTACCATGGACATAGATGCGAATGTTAGTATACCTTTTGCCCTGGTTGATGAAATAGCGGATGCATCGCCAGCAGCAGACGATGGATTACAACTCGGTGATCAAGTTCTGAAATTCGGGAACGTCGAGGCTGGTGATGATCTGTTGCATAAGCTTGCCTTTGAAGCCCAGAGTAATCAAGGTCGTCCAATACCTGTTGTAGTTCTGAGGCATGGTACTACACTCAATTTGACTGTGACGCCCAGATCATGGCAAGGCCGAGGCCTTCTTGGATGCCATTTTCGGATGTTGTAG MVASNVKSETIGLMEKRSAIEAQMDAIISRLSQPGGPGLSGNLVDSEGFPRSDIDIPVILSERRRLSELRNDHTEITEKINQNIQILHSAKPASSLSLSRDAENTEGSNVTVASPASNGISQSNSSTTMDIDANVSIPFALVDEIADASPAADDGLQLGDQVLKFGNVEAGDDLLHKLAFEAQSNQGRPIPVVVLRHGTTLNLTVTPRSWQGRGLLGCHFRML
BLAST of Carg16436-RA vs. NCBI nr
Match: XP_022938278.1 (26S proteasome non-ATPase regulatory subunit 9 [Cucurbita moschata]) HSP 1 Score: 423.7 bits (1088), Expect = 3.9e-115 Identity = 221/223 (99.10%), Postives = 222/223 (99.55%), Query Frame = 0
BLAST of Carg16436-RA vs. NCBI nr
Match: XP_023537248.1 (26S proteasome non-ATPase regulatory subunit 9-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 420.2 bits (1079), Expect = 4.3e-114 Identity = 218/223 (97.76%), Postives = 221/223 (99.10%), Query Frame = 0
BLAST of Carg16436-RA vs. NCBI nr
Match: XP_022969625.1 (26S proteasome non-ATPase regulatory subunit 9-like [Cucurbita maxima]) HSP 1 Score: 406.8 bits (1044), Expect = 4.9e-110 Identity = 210/223 (94.17%), Postives = 217/223 (97.31%), Query Frame = 0
BLAST of Carg16436-RA vs. NCBI nr
Match: XP_008452876.1 (PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Cucumis melo]) HSP 1 Score: 365.2 bits (936), Expect = 1.6e-97 Identity = 194/229 (84.72%), Postives = 208/229 (90.83%), Query Frame = 0
BLAST of Carg16436-RA vs. NCBI nr
Match: XP_004144734.1 (PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Cucumis sativus] >KGN61045.1 hypothetical protein Csa_2G035450 [Cucumis sativus]) HSP 1 Score: 361.7 bits (927), Expect = 1.8e-96 Identity = 192/229 (83.84%), Postives = 207/229 (90.39%), Query Frame = 0
BLAST of Carg16436-RA vs. TAIR10
Match: AT5G57950.1 (26S proteasome regulatory subunit, putative) HSP 1 Score: 263.1 bits (671), Expect = 1.6e-70 Identity = 136/227 (59.91%), Postives = 175/227 (77.09%), Query Frame = 0
BLAST of Carg16436-RA vs. Swiss-Prot
Match: sp|O00233|PSMD9_HUMAN (26S proteasome non-ATPase regulatory subunit 9 OS=Homo sapiens OX=9606 GN=PSMD9 PE=1 SV=3) HSP 1 Score: 102.1 bits (253), Expect = 8.4e-21 Identity = 68/214 (31.78%), Postives = 108/214 (50.47%), Query Frame = 0
BLAST of Carg16436-RA vs. Swiss-Prot
Match: sp|Q9WTV5|PSMD9_RAT (26S proteasome non-ATPase regulatory subunit 9 OS=Rattus norvegicus OX=10116 GN=Psmd9 PE=1 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 1.9e-20 Identity = 66/212 (31.13%), Postives = 108/212 (50.94%), Query Frame = 0
BLAST of Carg16436-RA vs. Swiss-Prot
Match: sp|Q3SZ19|PSMD9_BOVIN (26S proteasome non-ATPase regulatory subunit 9 OS=Bos taurus OX=9913 GN=PSMD9 PE=1 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 5.5e-20 Identity = 64/213 (30.05%), Postives = 109/213 (51.17%), Query Frame = 0
BLAST of Carg16436-RA vs. Swiss-Prot
Match: sp|Q9CR00|PSMD9_MOUSE (26S proteasome non-ATPase regulatory subunit 9 OS=Mus musculus OX=10090 GN=Psmd9 PE=1 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 1.6e-19 Identity = 64/213 (30.05%), Postives = 107/213 (50.23%), Query Frame = 0
BLAST of Carg16436-RA vs. Swiss-Prot
Match: sp|P40555|PSMD9_YEAST (Probable 26S proteasome regulatory subunit p27 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NAS2 PE=1 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 5.1e-18 Identity = 64/213 (30.05%), Postives = 103/213 (48.36%), Query Frame = 0
BLAST of Carg16436-RA vs. TrEMBL
Match: tr|A0A1S3BUX8|A0A1S3BUX8_CUCME (26S proteasome non-ATPase regulatory subunit 9 OS=Cucumis melo OX=3656 GN=LOC103493762 PE=4 SV=1) HSP 1 Score: 365.2 bits (936), Expect = 1.1e-97 Identity = 194/229 (84.72%), Postives = 208/229 (90.83%), Query Frame = 0
BLAST of Carg16436-RA vs. TrEMBL
Match: tr|A0A0A0LGM6|A0A0A0LGM6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G035450 PE=4 SV=1) HSP 1 Score: 361.7 bits (927), Expect = 1.2e-96 Identity = 192/229 (83.84%), Postives = 207/229 (90.39%), Query Frame = 0
BLAST of Carg16436-RA vs. TrEMBL
Match: tr|V7B1D5|V7B1D5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G195100g PE=4 SV=1) HSP 1 Score: 297.0 bits (759), Expect = 3.6e-77 Identity = 150/223 (67.26%), Postives = 188/223 (84.30%), Query Frame = 0
BLAST of Carg16436-RA vs. TrEMBL
Match: tr|V7AXA1|V7AXA1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G195100g PE=4 SV=1) HSP 1 Score: 296.2 bits (757), Expect = 6.2e-77 Identity = 151/228 (66.23%), Postives = 191/228 (83.77%), Query Frame = 0
BLAST of Carg16436-RA vs. TrEMBL
Match: tr|A0A2I4DUP1|A0A2I4DUP1_9ROSI (26S proteasome non-ATPase regulatory subunit 9 OS=Juglans regia OX=51240 GN=LOC108983617 PE=4 SV=1) HSP 1 Score: 295.0 bits (754), Expect = 1.4e-76 Identity = 152/230 (66.09%), Postives = 190/230 (82.61%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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