Carg16417-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCACGTGGTTATAGTAATAAATATAAAAATGGTATAAGAATGAATGTCATCATGGGAAATGTATTATTTTTTTAATAAATGAGTCCTTAATTAGTAAAAAAAAATCAGGTAATTATTTCCATTTAATTTCAAATAAGCTAATTAATTATCTTTTTAACTAAATTAATTTAATTTCAAATATATTCAAATAAATACATTACCTTTAAATAAAAAAACAATATCTTACCCAATATTGAGACAAAATTCAAGCTTTGTGTTCTTTTTTGCCTCTTGCCTTTTGAAATGTTAAAGATTTCTCTACCTTTGTGCCTTGTGTTCCTTCTTTTGCTAGTAATAAGTAAGTGCATGGATTAATATTTTCTCTTTCGTTGAGTTATCTATGAATTTGGATGTGAGATTCTACATTCGTTCGGGAGGAGAATGAAACACTCTTTATGAGGGTGTGAAAACCTCTTCTAGTAGACGCGTTTTAAAAACATTGAGGGGAAGCATGAAAGGGAAAGCTCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGGGTTGTTACAAATGGTATTAGAGTTAGATACCGGGAGATGTTCTAGCGAGGAGGCTGAGCCCTGAAGTGGGTGGACACGAAATGGTGTGTCAACAAGGACATTGGGCCTTGAAGGGGGTGGATTGGGGGGCCTACTTCGATTGGAGAAGGAAACGAGTGTCAGTGAGGATGCTGGGCCCTGAAAGGAGGTGGATTGTGAGATCCCACATCGGTTGGGGAAGAAAATGAAACACCAGATAAGAGTGAGGAAATCTCTCCTCGGGGCGGATTGTAAGATCCCACCTCGATTGAGGAGGAAAATGAAACACCCTTTATAAGGGCATGGAAATCTCTCCTCTGGGTAGGTTGTGAGATCTTACATCGGTTGGGGAGGAAAACGAAACACCCTTTACAAGGGTGTGAAAATCTCTCCTCGGGGCGGATTGTGAGATCCCACATCGATTGGGGAGGAAAATGAAACCCTGAAAATCTCTCCTCGAGAGGATTGAGAGATCCCATATCGGTTGGGGAGGAAAATGAAATCTTGATATAAAATGAAAATCTCTCCCAACACGTTTTAAAAATCTTTATAGAAAACCCAAAAGGGAAAGCCCAAATAGGACAATATCGCTAGCGTTGGGCTTGGGCTCTTACATTAGAAGGGTCGAATCTTCCATCTGAAGGAAAGAAATAGGTGTCTATTCTACGTAACTCTGCTTAAATCGAATTCTTGATCTAAGCAAATCTTCTTTCCATCTCTAAAGACATAATTTTTTTCCTAAAACTTTCCAAATTTTAGTTTTTTTTAGTTAACCGTAACATGATTATATTGTTATTCTCGTTGAGATTTCATAACCTAACAACATTTCAAATTTGATGTTGACGGGATAGACAAGAAGCCAGAAGTAAAGAGCGACGACTTATGTGCCGAAGGGCTAGGAGAGTGCGGAAGCGACTGCGACCAAAGGTGCAAAGCCAGGCACATCCCAGCCGAGAACCCGCAAGGCCGCTGCAACCGCCTCGGCAACGAGGCGTTGTGCGAGTGTCTTTATAGTTGTCGTATGACACCACCACCGGGAAAGGTTTGCCAAGATGGCCTAGGGCAGTGCAGCGCCAAATGCAACAACGATTGCTGTAGTGCTAAATGTGCGTCTAAGCACAATGGAGGACAGGGCTACTGCGACACCAACGTTGGCATTCGTTTGTGCCAATGCAGCTATCCTTGCTGA ATGCCACGTGACAAGAAGCCAGAAGTAAAGAGCGACGACTTATGTGCCGAAGGGCTAGGAGAGTGCGGAAGCGACTGCGACCAAAGGTGCAAAGCCAGGCACATCCCAGCCGAGAACCCGCAAGGCCGCTGCAACCGCCTCGGCAACGAGGCGTTGTGCGAGTGTCTTTATAGTTGTCGTATGACACCACCACCGGGAAAGGTTTGCCAAGATGGCCTAGGGCAGTGCAGCGCCAAATGCAACAACGATTGCTGTAGTGCTAAATGTGCGTCTAAGCACAATGGAGGACAGGGCTACTGCGACACCAACGTTGGCATTCGTTTGTGCCAATGCAGCTATCCTTGCTGA ATGCCACGTGACAAGAAGCCAGAAGTAAAGAGCGACGACTTATGTGCCGAAGGGCTAGGAGAGTGCGGAAGCGACTGCGACCAAAGGTGCAAAGCCAGGCACATCCCAGCCGAGAACCCGCAAGGCCGCTGCAACCGCCTCGGCAACGAGGCGTTGTGCGAGTGTCTTTATAGTTGTCGTATGACACCACCACCGGGAAAGGTTTGCCAAGATGGCCTAGGGCAGTGCAGCGCCAAATGCAACAACGATTGCTGTAGTGCTAAATGTGCGTCTAAGCACAATGGAGGACAGGGCTACTGCGACACCAACGTTGGCATTCGTTTGTGCCAATGCAGCTATCCTTGCTGA MPRDKKPEVKSDDLCAEGLGECGSDCDQRCKARHIPAENPQGRCNRLGNEALCECLYSCRMTPPPGKVCQDGLGQCSAKCNNDCCSAKCASKHNGGQGYCDTNVGIRLCQCSYPC
BLAST of Carg16417-RA vs. NCBI nr
Match: KGN61166.1 (hypothetical protein Csa_2G060470 [Cucumis sativus]) HSP 1 Score: 151.0 bits (380), Expect = 2.5e-33 Identity = 65/113 (57.52%), Postives = 85/113 (75.22%), Query Frame = 0
BLAST of Carg16417-RA vs. NCBI nr
Match: XP_004148336.2 (PREDICTED: defensin-like protein 182 [Cucumis sativus]) HSP 1 Score: 151.0 bits (380), Expect = 2.5e-33 Identity = 65/113 (57.52%), Postives = 85/113 (75.22%), Query Frame = 0
BLAST of Carg16417-RA vs. NCBI nr
Match: XP_021893125.1 (defensin-like protein 182 [Carica papaya]) HSP 1 Score: 126.7 bits (317), Expect = 5.0e-26 Identity = 53/103 (51.46%), Postives = 66/103 (64.08%), Query Frame = 0
BLAST of Carg16417-RA vs. NCBI nr
Match: KCW80873.1 (hypothetical protein EUGRSUZ_C02232 [Eucalyptus grandis]) HSP 1 Score: 114.0 bits (284), Expect = 3.4e-22 Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 0
BLAST of Carg16417-RA vs. NCBI nr
Match: OWM86961.1 (hypothetical protein CDL15_Pgr015997 [Punica granatum]) HSP 1 Score: 113.6 bits (283), Expect = 4.4e-22 Identity = 50/102 (49.02%), Postives = 59/102 (57.84%), Query Frame = 0
BLAST of Carg16417-RA vs. TAIR10
Match: AT4G30070.1 (low-molecular-weight cysteine-rich 59) HSP 1 Score: 99.8 bits (247), Expect = 1.2e-21 Identity = 45/106 (42.45%), Postives = 58/106 (54.72%), Query Frame = 0
BLAST of Carg16417-RA vs. TAIR10
Match: AT5G38330.1 (low-molecular-weight cysteine-rich 80) HSP 1 Score: 98.2 bits (243), Expect = 3.5e-21 Identity = 45/102 (44.12%), Postives = 56/102 (54.90%), Query Frame = 0
BLAST of Carg16417-RA vs. TAIR10
Match: AT4G30074.1 (low-molecular-weight cysteine-rich 19) HSP 1 Score: 92.8 bits (229), Expect = 1.5e-19 Identity = 46/103 (44.66%), Postives = 56/103 (54.37%), Query Frame = 0
BLAST of Carg16417-RA vs. Swiss-Prot
Match: sp|P82773|DF182_ARATH (Defensin-like protein 182 OS=Arabidopsis thaliana OX=3702 GN=PDF3.2 PE=2 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 2.2e-20 Identity = 45/106 (42.45%), Postives = 58/106 (54.72%), Query Frame = 0
BLAST of Carg16417-RA vs. Swiss-Prot
Match: sp|P82789|DF181_ARATH (Defensin-like protein 181 OS=Arabidopsis thaliana OX=3702 GN=PDF3.1 PE=2 SV=2) HSP 1 Score: 98.2 bits (243), Expect = 6.3e-20 Identity = 45/102 (44.12%), Postives = 56/102 (54.90%), Query Frame = 0
BLAST of Carg16417-RA vs. Swiss-Prot
Match: sp|P82733|DF183_ARATH (Defensin-like protein 183 OS=Arabidopsis thaliana OX=3702 GN=LCR19 PE=2 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 2.6e-18 Identity = 46/103 (44.66%), Postives = 56/103 (54.37%), Query Frame = 0
BLAST of Carg16417-RA vs. TrEMBL
Match: tr|A0A0A0LMG4|A0A0A0LMG4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060470 PE=4 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 1.7e-33 Identity = 65/113 (57.52%), Postives = 85/113 (75.22%), Query Frame = 0
BLAST of Carg16417-RA vs. TrEMBL
Match: tr|A0A059CQY4|A0A059CQY4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C02232 PE=4 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 2.2e-22 Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 0
BLAST of Carg16417-RA vs. TrEMBL
Match: tr|A0A2I0JK99|A0A2I0JK99_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_022939 PE=4 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 2.9e-22 Identity = 50/102 (49.02%), Postives = 59/102 (57.84%), Query Frame = 0
BLAST of Carg16417-RA vs. TrEMBL
Match: tr|A0A218XR16|A0A218XR16_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr015997 PE=4 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 2.9e-22 Identity = 50/102 (49.02%), Postives = 59/102 (57.84%), Query Frame = 0
BLAST of Carg16417-RA vs. TrEMBL
Match: tr|A0A059CR59|A0A059CR59_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C02226 PE=4 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 8.5e-22 Identity = 49/108 (45.37%), Postives = 67/108 (62.04%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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