Carg15655-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGAACAGAATTATATTCTGCGCTGCAATCTGCCTGGCCATCCTAGCTGTTATTCTCTTGGCCTTGCTCTCGCCGGTATCCCACAGAAAACAGGCCAAGCACGACAGGAAACCTCCATGGGCGGACCTGTCCCTTTACATTCAACAGCCAAATTCTAAAGCAAATTCCAGATCTAACAATATGCAGCTTGTACCAAGTCCAGATTCTGGGATTTTTGTCTTCCGACGAATGCTTACAAAGGGACTCGAGAACACTTCCCAGATCGTCGGAAACGCTCAAGGTTTCATCATTCCTAATGAACAGTTTGCTCGTTCGTCGTTCAATATCATCTATCTGAGTTTCGACACACCGGAATATTCGGGCAGCTTGAGCGTCCATGCCAAACATATAGGGCATGAGAACAGAGAAGAAATGACAGTGGTTGGGGGGACAGGGTCTTTTGCTTTTGCACAAGGGATAGCTATTTTTCTTCAGACAGAGAGGCAAGCATCTGTTACGGATACATGTTATCATTTAAAGCTTCAACTTCAATTCCCCAAATGA ATGAAGAACAGAATTATATTCTGCGCTGCAATCTGCCTGGCCATCCTAGCTGTTATTCTCTTGGCCTTGCTCTCGCCGGTATCCCACAGAAAACAGGCCAAGCACGACAGGAAACCTCCATGGGCGGACCTGTCCCTTTACATTCAACAGCCAAATTCTAAAGCAAATTCCAGATCTAACAATATGCAGCTTGTACCAAGTCCAGATTCTGGGATTTTTGTCTTCCGACGAATGCTTACAAAGGGACTCGAGAACACTTCCCAGATCGTCGGAAACGCTCAAGGTTTCATCATTCCTAATGAACAGTTTGCTCGTTCGTCGTTCAATATCATCTATCTGAGTTTCGACACACCGGAATATTCGGGCAGCTTGAGCGTCCATGCCAAACATATAGGGCATGAGAACAGAGAAGAAATGACAGTGGTTGGGGGGACAGGGTCTTTTGCTTTTGCACAAGGGATAGCTATTTTTCTTCAGACAGAGAGGCAAGCATCTGTTACGGATACATGTTATCATTTAAAGCTTCAACTTCAATTCCCCAAATGA ATGAAGAACAGAATTATATTCTGCGCTGCAATCTGCCTGGCCATCCTAGCTGTTATTCTCTTGGCCTTGCTCTCGCCGGTATCCCACAGAAAACAGGCCAAGCACGACAGGAAACCTCCATGGGCGGACCTGTCCCTTTACATTCAACAGCCAAATTCTAAAGCAAATTCCAGATCTAACAATATGCAGCTTGTACCAAGTCCAGATTCTGGGATTTTTGTCTTCCGACGAATGCTTACAAAGGGACTCGAGAACACTTCCCAGATCGTCGGAAACGCTCAAGGTTTCATCATTCCTAATGAACAGTTTGCTCGTTCGTCGTTCAATATCATCTATCTGAGTTTCGACACACCGGAATATTCGGGCAGCTTGAGCGTCCATGCCAAACATATAGGGCATGAGAACAGAGAAGAAATGACAGTGGTTGGGGGGACAGGGTCTTTTGCTTTTGCACAAGGGATAGCTATTTTTCTTCAGACAGAGAGGCAAGCATCTGTTACGGATACATGTTATCATTTAAAGCTTCAACTTCAATTCCCCAAATGA MKNRIIFCAAICLAILAVILLALLSPVSHRKQAKHDRKPPWADLSLYIQQPNSKANSRSNNMQLVPSPDSGIFVFRRMLTKGLENTSQIVGNAQGFIIPNEQFARSSFNIIYLSFDTPEYSGSLSVHAKHIGHENREEMTVVGGTGSFAFAQGIAIFLQTERQASVTDTCYHLKLQLQFPK
BLAST of Carg15655-RA vs. NCBI nr
Match: XP_022952599.1 (uncharacterized protein LOC111455239 [Cucurbita moschata]) HSP 1 Score: 350.5 bits (898), Expect = 3.4e-93 Identity = 177/181 (97.79%), Postives = 178/181 (98.34%), Query Frame = 0
BLAST of Carg15655-RA vs. NCBI nr
Match: XP_023511732.1 (uncharacterized protein LOC111776503 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 350.5 bits (898), Expect = 3.4e-93 Identity = 178/181 (98.34%), Postives = 179/181 (98.90%), Query Frame = 0
BLAST of Carg15655-RA vs. NCBI nr
Match: XP_022969428.1 (dirigent protein 8 [Cucurbita maxima]) HSP 1 Score: 349.7 bits (896), Expect = 5.8e-93 Identity = 177/181 (97.79%), Postives = 179/181 (98.90%), Query Frame = 0
BLAST of Carg15655-RA vs. NCBI nr
Match: XP_004139895.1 (PREDICTED: dirigent protein 6 [Cucumis sativus]) HSP 1 Score: 320.1 bits (819), Expect = 4.9e-84 Identity = 159/181 (87.85%), Postives = 170/181 (93.92%), Query Frame = 0
BLAST of Carg15655-RA vs. NCBI nr
Match: XP_008447099.1 (PREDICTED: dirigent protein 1 [Cucumis melo]) HSP 1 Score: 315.1 bits (806), Expect = 1.6e-82 Identity = 158/181 (87.29%), Postives = 165/181 (91.16%), Query Frame = 0
BLAST of Carg15655-RA vs. TAIR10
Match: AT5G42655.1 (Disease resistance-responsive (dirigent-like protein) family protein) HSP 1 Score: 127.5 bits (319), Expect = 8.4e-30 Identity = 59/110 (53.64%), Postives = 82/110 (74.55%), Query Frame = 0
BLAST of Carg15655-RA vs. TAIR10
Match: AT4G23690.1 (Disease resistance-responsive (dirigent-like protein) family protein) HSP 1 Score: 52.0 bits (123), Expect = 4.5e-07 Identity = 45/156 (28.85%), Postives = 74/156 (47.44%), Query Frame = 0
BLAST of Carg15655-RA vs. TAIR10
Match: AT2G21110.1 (Disease resistance-responsive (dirigent-like protein) family protein) HSP 1 Score: 50.1 bits (118), Expect = 1.7e-06 Identity = 27/91 (29.67%), Postives = 49/91 (53.85%), Query Frame = 0
BLAST of Carg15655-RA vs. TAIR10
Match: AT5G49040.1 (Disease resistance-responsive (dirigent-like protein) family protein) HSP 1 Score: 48.5 bits (114), Expect = 5.0e-06 Identity = 43/153 (28.10%), Postives = 66/153 (43.14%), Query Frame = 0
BLAST of Carg15655-RA vs. TAIR10
Match: AT3G13650.1 (Disease resistance-responsive (dirigent-like protein) family protein) HSP 1 Score: 47.8 bits (112), Expect = 8.5e-06 Identity = 33/108 (30.56%), Postives = 52/108 (48.15%), Query Frame = 0
BLAST of Carg15655-RA vs. Swiss-Prot
Match: sp|Q9SUQ8|DIR6_ARATH (Dirigent protein 6 OS=Arabidopsis thaliana OX=3702 GN=DIR6 PE=1 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 8.1e-06 Identity = 45/156 (28.85%), Postives = 74/156 (47.44%), Query Frame = 0
BLAST of Carg15655-RA vs. Swiss-Prot
Match: sp|Q9SKQ2|DIR4_ARATH (Dirigent protein 4 OS=Arabidopsis thaliana OX=3702 GN=DIR4 PE=2 SV=1) HSP 1 Score: 50.1 bits (118), Expect = 3.1e-05 Identity = 27/91 (29.67%), Postives = 49/91 (53.85%), Query Frame = 0
BLAST of Carg15655-RA vs. Swiss-Prot
Match: sp|Q9FI66|DIR3_ARATH (Dirigent protein 3 OS=Arabidopsis thaliana OX=3702 GN=DIR3 PE=3 SV=1) HSP 1 Score: 48.5 bits (114), Expect = 9.0e-05 Identity = 43/153 (28.10%), Postives = 66/153 (43.14%), Query Frame = 0
BLAST of Carg15655-RA vs. Swiss-Prot
Match: sp|Q9LID5|DIR7_ARATH (Dirigent protein 7 OS=Arabidopsis thaliana OX=3702 GN=DIR7 PE=2 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 1.5e-04 Identity = 33/108 (30.56%), Postives = 52/108 (48.15%), Query Frame = 0
BLAST of Carg15655-RA vs. TrEMBL
Match: tr|A0A1S3BGM4|A0A1S3BGM4_CUCME (Dirigent protein OS=Cucumis melo OX=3656 GN=LOC103489634 PE=3 SV=1) HSP 1 Score: 315.1 bits (806), Expect = 1.0e-82 Identity = 158/181 (87.29%), Postives = 165/181 (91.16%), Query Frame = 0
BLAST of Carg15655-RA vs. TrEMBL
Match: tr|A0A0A0K911|A0A0A0K911_CUCSA (Dirigent protein OS=Cucumis sativus OX=3659 GN=Csa_7G238990 PE=3 SV=1) HSP 1 Score: 214.9 bits (546), Expect = 1.5e-52 Identity = 106/120 (88.33%), Postives = 111/120 (92.50%), Query Frame = 0
BLAST of Carg15655-RA vs. TrEMBL
Match: tr|A0A2P6PWW6|A0A2P6PWW6_ROSCH (Dirigent protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0294451 PE=3 SV=1) HSP 1 Score: 211.8 bits (538), Expect = 1.2e-51 Identity = 111/180 (61.67%), Postives = 138/180 (76.67%), Query Frame = 0
BLAST of Carg15655-RA vs. TrEMBL
Match: tr|A0A2N9G0K6|A0A2N9G0K6_FAGSY (Dirigent protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20827 PE=3 SV=1) HSP 1 Score: 211.5 bits (537), Expect = 1.6e-51 Identity = 108/177 (61.02%), Postives = 138/177 (77.97%), Query Frame = 0
BLAST of Carg15655-RA vs. TrEMBL
Match: tr|F6H030|F6H030_VITVI (Dirigent protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g11720 PE=3 SV=1) HSP 1 Score: 209.5 bits (532), Expect = 6.2e-51 Identity = 107/180 (59.44%), Postives = 133/180 (73.89%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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