Carg15019-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15019-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Agamous-like mads-box protein agl62
Location	Cucurbita_argyrosperma_scaffold_071 : 643800 .. 644537 (-)
Sequence length	738

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGACGGCAGCACCAAAATTAAGCAAACAAAGGGCCGACAAAAGATCGAGATGAAGAAGATTGAAAACGAAGACGACCGCCTCATCACCTTCTCCAAGCGCCGCTCCGGCATCTACAAAAAGGCCAGCGAATTAGCCACCTTGTGCGGCGCTGAAGTCGGCGTGGTCGTGTTTTCCCCAGCTGGAAAGCCCTTTTCCTTTGCTCATCCATGCATCGAATCTGTGGCTAACAAATTCCTTGATGAAAACCCTCAGCCAAACGACAACACTCACCCGCTTGTCGAAGCTCATCGACGCCTCAGAATCAACGAGCTGAACCAACAACACAATCAACTTCTGAGCCAGCTGGATGCCGAGAAGGAGAAAGGTAAGGCGCTTGAGAAACTGAAGAAGGTGAGAGGCAATAACGGGCGTGGTTGGTGGGAGTCTCCAACTGAAGAACTGGGAATTGAGGAATTGCAACAAGTTGATGGATCGCTGGGAGAATTGTACCAAAATGTTTGTCATGAACTCAAAGAGCGCGGCGTTCTTGGATCTTCTTCATACTCAGCTTCAAACACTTTGGGCTTTGATCATGCCGGCCGTGAAGAAACAATTCCTTTCAATATCTTAGCAACTGGAGCTGCTGCTGCTGCTGGTCCTTCTTCCGCTACTTATCTTCCTGATCCTAATCCCTTCGATTATGGACAACAACCACAACCACATCTCCCTCATCACCACCACCACCATCCATGA

mRNA sequence

ATGGCCGACGGCAGCACCAAAATTAAGCAAACAAAGGGCCGACAAAAGATCGAGATGAAGAAGATTGAAAACGAAGACGACCGCCTCATCACCTTCTCCAAGCGCCGCTCCGGCATCTACAAAAAGGCCAGCGAATTAGCCACCTTGTGCGGCGCTGAAGTCGGCGTGGTCGTGTTTTCCCCAGCTGGAAAGCCCTTTTCCTTTGCTCATCCATGCATCGAATCTGTGGCTAACAAATTCCTTGATGAAAACCCTCAGCCAAACGACAACACTCACCCGCTTGTCGAAGCTCATCGACGCCTCAGAATCAACGAGCTGAACCAACAACACAATCAACTTCTGAGCCAGCTGGATGCCGAGAAGGAGAAAGGTAAGGCGCTTGAGAAACTGAAGAAGGTGAGAGGCAATAACGGGCGTGGTTGGTGGGAGTCTCCAACTGAAGAACTGGGAATTGAGGAATTGCAACAAGTTGATGGATCGCTGGGAGAATTGTACCAAAATGTTTGTCATGAACTCAAAGAGCGCGGCGTTCTTGGATCTTCTTCATACTCAGCTTCAAACACTTTGGGCTTTGATCATGCCGGCCGTGAAGAAACAATTCCTTTCAATATCTTAGCAACTGGAGCTGCTGCTGCTGCTGGTCCTTCTTCCGCTACTTATCTTCCTGATCCTAATCCCTTCGATTATGGACAACAACCACAACCACATCTCCCTCATCACCACCACCACCATCCATGA

Coding sequence (CDS)

ATGGCCGACGGCAGCACCAAAATTAAGCAAACAAAGGGCCGACAAAAGATCGAGATGAAGAAGATTGAAAACGAAGACGACCGCCTCATCACCTTCTCCAAGCGCCGCTCCGGCATCTACAAAAAGGCCAGCGAATTAGCCACCTTGTGCGGCGCTGAAGTCGGCGTGGTCGTGTTTTCCCCAGCTGGAAAGCCCTTTTCCTTTGCTCATCCATGCATCGAATCTGTGGCTAACAAATTCCTTGATGAAAACCCTCAGCCAAACGACAACACTCACCCGCTTGTCGAAGCTCATCGACGCCTCAGAATCAACGAGCTGAACCAACAACACAATCAACTTCTGAGCCAGCTGGATGCCGAGAAGGAGAAAGGTAAGGCGCTTGAGAAACTGAAGAAGGTGAGAGGCAATAACGGGCGTGGTTGGTGGGAGTCTCCAACTGAAGAACTGGGAATTGAGGAATTGCAACAAGTTGATGGATCGCTGGGAGAATTGTACCAAAATGTTTGTCATGAACTCAAAGAGCGCGGCGTTCTTGGATCTTCTTCATACTCAGCTTCAAACACTTTGGGCTTTGATCATGCCGGCCGTGAAGAAACAATTCCTTTCAATATCTTAGCAACTGGAGCTGCTGCTGCTGCTGGTCCTTCTTCCGCTACTTATCTTCCTGATCCTAATCCCTTCGATTATGGACAACAACCACAACCACATCTCCCTCATCACCACCACCACCATCCATGA

Protein sequence

MADGSTKIKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSFAHPCIESVANKFLDENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAEKEKGKALEKLKKVRGNNGRGWWESPTEELGIEELQQVDGSLGELYQNVCHELKERGVLGSSSYSASNTLGFDHAGREETIPFNILATGAAAAAGPSSATYLPDPNPFDYGQQPQPHLPHHHHHHP

Homology

[Close]

BLAST of Carg15019-RA vs. NCBI nr
Match: XP_022926768.1 (agamous-like MADS-box protein AGL61 [Cucurbita moschata])

HSP 1 Score: 416.0 bits (1068), Expect = 8.9e-113
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MADGSTKIKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFS 60
           MADGSTKIKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFS
Sbjct: 44  MADGSTKIKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFS 103

Query: 61  PAGKPFSFAHPCIESVANKFLDENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAE 120
           PAGKPFSFAHPCIESVANKFLDENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAE
Sbjct: 104 PAGKPFSFAHPCIESVANKFLDENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAE 163

Query: 121 KEKGKALEKLKKVRGNNGRGWWESPTEELGIEELQQVDGSLGELYQNVCHELKERGVLGS 180
           KEKGKALEKLKKVRGNNGRGWWESPTEELGIEELQQVDGSLGELYQNVCHELKERGVLGS
Sbjct: 164 KEKGKALEKLKKVRGNNGRGWWESPTEELGIEELQQVDGSLGELYQNVCHELKERGVLGS 223

Query: 181 SSYSASNTLGFDHAGREETIPFNILATGA 210
           SSYSASNTLGFDHAGREETIPFNILATGA
Sbjct: 224 SSYSASNTLGFDHAGREETIPFNILATGA 252

[Close]

BLAST of Carg15019-RA vs. NCBI nr
Match: XP_023003356.1 (agamous-like MADS-box protein AGL62 [Cucurbita maxima])

HSP 1 Score: 415.2 bits (1066), Expect = 1.5e-112
Identity = 209/210 (99.52%), Postives = 209/210 (99.52%), Query Frame = 0


Query: 1   MADGSTKIKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFS 60
           MADGSTKIKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFS
Sbjct: 1   MADGSTKIKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFS 60

Query: 61  PAGKPFSFAHPCIESVANKFLDENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAE 120
           PAGKPFSFAHPCIESVANKFLDENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAE
Sbjct: 61  PAGKPFSFAHPCIESVANKFLDENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAE 120

Query: 121 KEKGKALEKLKKVRGNNGRGWWESPTEELGIEELQQVDGSLGELYQNVCHELKERGVLGS 180
           KEKGKALEKLKKVRGNNGRGWWESPTEEL IEELQQVDGSLGELYQNVCHELKERGVLGS
Sbjct: 121 KEKGKALEKLKKVRGNNGRGWWESPTEELAIEELQQVDGSLGELYQNVCHELKERGVLGS 180

Query: 181 SSYSASNTLGFDHAGREETIPFNILATGAA 211
           SSYSASNTLGFDHAGREETIPFNILATGAA
Sbjct: 181 SSYSASNTLGFDHAGREETIPFNILATGAA 210

[Close]

BLAST of Carg15019-RA vs. NCBI nr
Match: XP_023518350.1 (agamous-like MADS-box protein AGL62 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 414.8 bits (1065), Expect = 2.0e-112
Identity = 208/209 (99.52%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MADGSTKIKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFS 60
           MADGSTKIKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFS
Sbjct: 1   MADGSTKIKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFS 60

Query: 61  PAGKPFSFAHPCIESVANKFLDENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAE 120
           PAGKPFSFAHPCIESVANKFLDENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAE
Sbjct: 61  PAGKPFSFAHPCIESVANKFLDENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAE 120

Query: 121 KEKGKALEKLKKVRGNNGRGWWESPTEELGIEELQQVDGSLGELYQNVCHELKERGVLGS 180
           KEKGKALEKLKKVRGNNGRGWWESPTEELGI+ELQQVDGSLGELYQNVCHELKERGVLGS
Sbjct: 121 KEKGKALEKLKKVRGNNGRGWWESPTEELGIDELQQVDGSLGELYQNVCHELKERGVLGS 180

Query: 181 SSYSASNTLGFDHAGREETIPFNILATGA 210
           SSYSASNTLGFDHAGREETIPFNILATGA
Sbjct: 181 SSYSASNTLGFDHAGREETIPFNILATGA 209

[Close]

BLAST of Carg15019-RA vs. NCBI nr
Match: XP_022146674.1 (agamous-like MADS-box protein AGL61 [Momordica charantia])

HSP 1 Score: 339.7 bits (870), Expect = 8.1e-90
Identity = 177/215 (82.33%), Postives = 195/215 (90.70%), Query Frame = 0


Query: 9   KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 68
           KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF
Sbjct: 5   KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 64

Query: 69  AHPCIESVANKFLDENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAEKEKGKALE 128
           AHP IESVANKF++E PQPNDNTHPLVEAHRR+RINELNQQHNQLLSQL+AEKEKGKALE
Sbjct: 65  AHPSIESVANKFINETPQPNDNTHPLVEAHRRVRINELNQQHNQLLSQLEAEKEKGKALE 124

Query: 129 KLKKVRGN-NGRGWWESPTEELGIEELQQVDGSLGELYQNVCHELKERGVLGSSSYSASN 188
           K+KKVRGN NGRGWWE+PTEE+G+EELQQVD SLG+LY NVCH+L+ERGV+GSSS S+ +
Sbjct: 125 KMKKVRGNSNGRGWWETPTEEMGMEELQQVDASLGDLYTNVCHQLRERGVIGSSS-SSYS 184

Query: 189 TLGFDHAGREETIPFNILATGAAAAAGPSSATYLP 223
           ++ F+ AG EETIPFNILA G      P +  YLP
Sbjct: 185 SMPFNGAG-EETIPFNILANGPP----PPTNAYLP 213

[Close]

BLAST of Carg15019-RA vs. NCBI nr
Match: XP_011658286.1 (PREDICTED: agamous-like MADS-box protein AGL61 [Cucumis sativus] >KGN49381.1 hypothetical protein Csa_6G522745 [Cucumis sativus])

HSP 1 Score: 295.4 bits (755), Expect = 1.7e-76
Identity = 164/236 (69.49%), Postives = 178/236 (75.42%), Query Frame = 0


Query: 9   KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 68
           KQTKGRQKIEMKKI NEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF
Sbjct: 15  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 74

Query: 69  AHPCIESVANKFLDEN----------------------------PQPNDNTHPLVEAHRR 128
           AHPCIE++ANKFL+ N                                   HPLVEAHRR
Sbjct: 75  AHPCIETIANKFLNGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLVEAHRR 134

Query: 129 LRINELNQQHNQLLSQLDAEKEKGKALEKLKKVRGNNGRGWWESPTEELGIEELQQVDGS 188
           +RINELNQQHNQLLSQLDAEKEKGKALEKLK+VRG NGRGWWE+PTEELGIEELQ+VD S
Sbjct: 135 VRINELNQQHNQLLSQLDAEKEKGKALEKLKRVRG-NGRGWWETPTEELGIEELQEVDAS 194

Query: 189 LGELYQNVCHELKERGVLGSSSYSASN------TLGF----DHAGREETIPFNILA 207
            GE+Y NVCH+LK+RGV+G  SY+  N      ++GF    D  G EETIPFNILA
Sbjct: 195 FGEIYSNVCHQLKQRGVIGCCSYNNYNNNMNNSSMGFPLTNDQLG-EETIPFNILA 248

[Close]

BLAST of Carg15019-RA vs. TAIR10
Match: AT5G60440.1 (AGAMOUS-like 62)

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-35
Identity = 82/169 (48.52%), Postives = 111/169 (65.68%), Query Frame = 0


Query: 8   IKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFS 67
           +K++KGRQKIEM K++NE +  +TFSKRRSG++KKASEL TLCGAEV +VVFSP  K FS
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 68  FAHPCIESVANKFLDENPQP--NDNTHPLVEAHRRLRINELNQQHNQLLSQLDAEKEKGK 127
           F HP ++SV ++F++ NP P    N   L E  R   + +LN    Q+LSQL+ EK+K  
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 128 ALEKLK---KVRGNNGRGWWESPTEELGIEELQQVDGSLGELYQNVCHE 172
            L+K++   K  GN    WWE P EEL + +L+   G+L  L + V  E
Sbjct: 122 ELKKIREKTKALGN----WWEDPVEELALSQLEGFKGNLENLKKVVTVE 166

[Close]

BLAST of Carg15019-RA vs. TAIR10
Match: AT2G24840.1 (AGAMOUS-like 61)

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-32
Identity = 74/164 (45.12%), Postives = 109/164 (66.46%), Query Frame = 0


Query: 6   TKIKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKP 65
           +K K++ GRQKI M KI+ E  R +TFSKRR+G++KKASEL TLCGAE+G++VFSPA KP
Sbjct: 56  SKKKESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKP 115

Query: 66  FSFAHPCIESVANKFLDENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAEKEKGK 125
           FSF HP +ESV ++++  N      +  L  +       ELN Q   +LS+++ EK+KG+
Sbjct: 116 FSFGHPSVESVLDRYVSRNNMSLAQSQQLQGS--PAASCELNMQLTHILSEVEEEKKKGQ 175

Query: 126 ALEKLKKVRGNNGR-GWWESPTEELGIEELQQVDGSLGELYQNV 169
           A+E+++K         WWE P EE+ + +LQ++  +L EL + V
Sbjct: 176 AMEEMRKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

[Close]

BLAST of Carg15019-RA vs. TAIR10
Match: AT3G04100.1 (AGAMOUS-like 57)

HSP 1 Score: 127.9 bits (320), Expect = 8.7e-30
Identity = 69/169 (40.83%), Postives = 111/169 (65.68%), Query Frame = 0


Query: 7   KIKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPF 66
           K ++TKG+QKIEMKK+EN  DR+ITFSKR++GI+KK +EL  +C  EV  ++FS   KP+
Sbjct: 8   KGRKTKGKQKIEMKKVENYGDRMITFSKRKTGIFKKMNELVAMCDVEVAFLIFSQPKKPY 67

Query: 67  SFAHPCIESVANKFLD---ENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAEKEK 126
           +FAHP ++ VA++  +   + P   D+T PLVEA+++ R+++L ++   L  +L  + EK
Sbjct: 68  TFAHPSMKKVADRLKNPSRQEPLERDDTRPLVEAYKKRRLHDLVKKMEALEEELAMDLEK 127

Query: 127 GKALEKLKKVRGNNGRGWWESPTEELGIEELQQVDGSLGELYQNVCHEL 173
            K L++ +  +    + WW  P+E L  +ELQQ   ++ EL  N+C  +
Sbjct: 128 LKLLKESRNEK-KLDKMWWNFPSEGLSAKELQQRYQAMLELRDNLCDNM 175

[Close]

BLAST of Carg15019-RA vs. TAIR10
Match: AT4G36590.1 (MADS-box transcription factor family protein)

HSP 1 Score: 120.2 bits (300), Expect = 1.8e-27
Identity = 70/174 (40.23%), Postives = 105/174 (60.34%), Query Frame = 0


Query: 8   IKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFS 67
           ++ TKGRQKIEMKK+ENE +  +TFSKRR G++KKASEL TL GAE+ ++VFSP GK FS
Sbjct: 2   VRSTKGRQKIEMKKMENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSPGGKVFS 61

Query: 68  FAHPCIESVANKFLDENPQPN-------DNTHPLVEAHRRLRINELNQQHNQLLSQLDAE 127
           F HP ++ + ++F   NP  N       +N   LVE      I  LN    ++L+  + E
Sbjct: 62  FGHPSVQELIHRF--SNPNHNSAIVHHQNNNLQLVETRPDRNIQYLNNILTEVLANQEKE 121

Query: 128 KEKGKALEKLKKVRGNNGRGWWESPTEELGIEELQQVDGSLGELYQNVCHELKE 175
           K+K   L+ LK+ R   G  W+E   ++L + E  Q+  +L ++ + +  E+ +
Sbjct: 122 KQKRMVLDLLKESREQVG-NWYEKDVKDLDMNETNQLISALQDVKKKLVREMSQ 172

[Close]

BLAST of Carg15019-RA vs. TAIR10
Match: AT1G29962.1 (AGAMOUS-like 64)

HSP 1 Score: 119.4 bits (298), Expect = 3.1e-27
Identity = 65/173 (37.57%), Postives = 108/173 (62.43%), Query Frame = 0


Query: 7   KIKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPF 66
           K K+TKG+Q+I +KKIE ++DRL+T SKRR+GIY K SEL+ LCGAEV  + +S +GKP+
Sbjct: 2   KPKKTKGKQRINIKKIEKDEDRLVTLSKRRNGIYTKLSELSILCGAEVAFLGYSCSGKPY 61

Query: 67  SFAHPCIESVANKFLDENPQPNDNT---HPLVEAHRRLRINELNQQHNQLLSQLDAEKEK 126
           +F  P  ++VA +FL+     + ++     ++ AH++ +I EL + +N+L+ ++  E+ K
Sbjct: 62  TFGSPSFQAVAERFLNGEASSSSSSSLQRSVMNAHQQAKIQELCKVYNRLVEEITVEEVK 121

Query: 127 GKALEKLKKVRGNNGRGWWE-SPTEELGIEELQQVDGSLGELYQNVCHELKER 176
            K    L ++   N   WW+  P +    EE++++     ELY+ +C E   R
Sbjct: 122 LKKTAALAEMMPMNEDAWWKVDPNDVKDREEVKKMMEKHQELYEKLCEEAASR 174

[Close]

BLAST of Carg15019-RA vs. Swiss-Prot
Match: sp|Q9FKK2|AGL62_ARATH (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.3e-34
Identity = 82/169 (48.52%), Postives = 111/169 (65.68%), Query Frame = 0


Query: 8   IKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFS 67
           +K++KGRQKIEM K++NE +  +TFSKRRSG++KKASEL TLCGAEV +VVFSP  K FS
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 68  FAHPCIESVANKFLDENPQP--NDNTHPLVEAHRRLRINELNQQHNQLLSQLDAEKEKGK 127
           F HP ++SV ++F++ NP P    N   L E  R   + +LN    Q+LSQL+ EK+K  
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 128 ALEKLK---KVRGNNGRGWWESPTEELGIEELQQVDGSLGELYQNVCHE 172
            L+K++   K  GN    WWE P EEL + +L+   G+L  L + V  E
Sbjct: 122 ELKKIREKTKALGN----WWEDPVEELALSQLEGFKGNLENLKKVVTVE 166

[Close]

BLAST of Carg15019-RA vs. Swiss-Prot
Match: sp|Q4PSU4|AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.0e-31
Identity = 74/164 (45.12%), Postives = 109/164 (66.46%), Query Frame = 0


Query: 6   TKIKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKP 65
           +K K++ GRQKI M KI+ E  R +TFSKRR+G++KKASEL TLCGAE+G++VFSPA KP
Sbjct: 56  SKKKESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKP 115

Query: 66  FSFAHPCIESVANKFLDENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAEKEKGK 125
           FSF HP +ESV ++++  N      +  L  +       ELN Q   +LS+++ EK+KG+
Sbjct: 116 FSFGHPSVESVLDRYVSRNNMSLAQSQQLQGS--PAASCELNMQLTHILSEVEEEKKKGQ 175

Query: 126 ALEKLKKVRGNNGR-GWWESPTEELGIEELQQVDGSLGELYQNV 169
           A+E+++K         WWE P EE+ + +LQ++  +L EL + V
Sbjct: 176 AMEEMRKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

[Close]

BLAST of Carg15019-RA vs. Swiss-Prot
Match: sp|O64703|AGL29_ARATH (Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana OX=3702 GN=AGL29 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-21
Identity = 65/175 (37.14%), Postives = 107/175 (61.14%), Query Frame = 0


Query: 13  GRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSFAHPC 72
           GR+KI+M+ +++ + R +TFSKRR+G++KKASELATLC AE+G+VVFSP GKPFS+  P 
Sbjct: 2   GRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKPN 61

Query: 73  IESVANKFLDENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAEKEKG-KALEKLK 132
           ++SVA +F+ E    +D+       + R ++  L+++ + L  +++AEKE+G K+ EKL+
Sbjct: 62  LDSVAERFMREY-DDSDSGDEEKSGNYRPKLKRLSERLDLLNQEVEAEKERGEKSQEKLE 121

Query: 133 KVRGNNGRGWWESPTEELGIEELQQ-----------VDGSLGELYQNVCHELKER 176
                 G   ++   E L ++EL +           ++G +  L  + C  L  R
Sbjct: 122 SA----GDERFKESIETLTLDELNEYKDRLQTVHGRIEGQVNHLQASSCLMLLSR 171

[Close]

BLAST of Carg15019-RA vs. Swiss-Prot
Match: sp|Q9LMM8|AGL28_ARATH (Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana OX=3702 GN=AGL28 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.3e-16
Identity = 47/101 (46.53%), Postives = 65/101 (64.36%), Query Frame = 0


Query: 9   KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 68
           ++  GR+KIE+ K+ NE +  +TFSKRRSG++KK SEL TLC AE+ ++VFSP+GK +SF
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 69  AHPCIESVANKFLDEN--PQPNDNTHPLVEAHRRLRINELN 108
            HP +    NK LD +       N     E+  +LRI  LN
Sbjct: 63  GHPNV----NKLLDHSLGRVIRHNNTNFAESRTKLRIQMLN 99

[Close]

BLAST of Carg15019-RA vs. Swiss-Prot
Match: sp|O80807|AGL23_ARATH (Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.6e-15
Identity = 55/185 (29.73%), Postives = 92/185 (49.73%), Query Frame = 0


Query: 8   IKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFS 67
           +K+T GR+K+E+ K+  E +  +TFSKR++G++KKASE  TLC A++ ++VFSPAGK FS
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 68  FAHPCIESVANKFLDENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAEKEKGKAL 127
           F HP ++ + + F         N   L E++ +L +  LN+ + ++              
Sbjct: 62  FGHPNVDVLLDHF--RGCVVGHNNTNLDESYTKLHVQMLNKSYTEVXXXXXXXXXXXXXX 121

Query: 128 EKLKKVRGNNGRGWWESPTE------ELGIEELQQVDGSLGELYQNVCHELKERGVLGSS 187
                        W +SP E         I  L+ +   + E    + H+      +GSS
Sbjct: 122 XXXXXXXXXXXEWWSKSPLELNLSQSTCMIRVLKDLKKIVDEKAIQLIHQTNPNFYVGSS 181

[Close]

BLAST of Carg15019-RA vs. TrEMBL
Match: tr|A0A0A0KNT7|A0A0A0KNT7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G522745 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.2e-76
Identity = 164/236 (69.49%), Postives = 178/236 (75.42%), Query Frame = 0


Query: 9   KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 68
           KQTKGRQKIEMKKI NEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF
Sbjct: 15  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 74

Query: 69  AHPCIESVANKFLDEN----------------------------PQPNDNTHPLVEAHRR 128
           AHPCIE++ANKFL+ N                                   HPLVEAHRR
Sbjct: 75  AHPCIETIANKFLNGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLVEAHRR 134

Query: 129 LRINELNQQHNQLLSQLDAEKEKGKALEKLKKVRGNNGRGWWESPTEELGIEELQQVDGS 188
           +RINELNQQHNQLLSQLDAEKEKGKALEKLK+VRG NGRGWWE+PTEELGIEELQ+VD S
Sbjct: 135 VRINELNQQHNQLLSQLDAEKEKGKALEKLKRVRG-NGRGWWETPTEELGIEELQEVDAS 194

Query: 189 LGELYQNVCHELKERGVLGSSSYSASN------TLGF----DHAGREETIPFNILA 207
            GE+Y NVCH+LK+RGV+G  SY+  N      ++GF    D  G EETIPFNILA
Sbjct: 195 FGEIYSNVCHQLKQRGVIGCCSYNNYNNNMNNSSMGFPLTNDQLG-EETIPFNILA 248

[Close]

BLAST of Carg15019-RA vs. TrEMBL
Match: tr|A0A2P4L9V9|A0A2P4L9V9_QUESU (Agamous-like mads-box protein agl62 OS=Quercus suber OX=58331 GN=CFP56_18171 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.4e-66
Identity = 138/209 (66.03%), Postives = 166/209 (79.43%), Query Frame = 0


Query: 9   KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 68
           K+TKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASEL TLCGAEVGVV+FSPAGKPFSF
Sbjct: 4   KKTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELVTLCGAEVGVVIFSPAGKPFSF 63

Query: 69  AHPCIESVANKFLDENPQP--NDNTHPLVEAHRRLRINELNQQHNQLLSQLDAEKEKGKA 128
            HP +ESVAN+FL +NP P   DNTHPLVEAHRR+RINELNQQ+N+LLS L+AEK++GKA
Sbjct: 64  GHPSVESVANRFLRQNPLPGQGDNTHPLVEAHRRVRINELNQQYNELLSLLEAEKDQGKA 123

Query: 129 LEKLKKVRGNNGRGWWESPTEELGIEELQQVDGSLGELYQNVCHELKERGVLGSSSYSAS 188
           L+KL K RGN  +GWWE PTEELG +EL+Q++  L EL++N+C+ +KE+   G +  S+S
Sbjct: 124 LQKLTKARGN--KGWWEVPTEELGYQELKQMNAQLEELHKNLCNHMKEKAFAGGALPSSS 183

Query: 189 NTLGFDHAGREETIPFNILATGAAAAAGP 216
               F     + +IPFN  A+ A     P
Sbjct: 184 TY--FPGNSSQGSIPFNPNASDADPTLHP 208

[Close]

BLAST of Carg15019-RA vs. TrEMBL
Match: tr|A0A2N9GTK8|A0A2N9GTK8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30506 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 9.2e-66
Identity = 137/212 (64.62%), Postives = 166/212 (78.30%), Query Frame = 0


Query: 9   KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 68
           K+TKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASEL TLCGAEVGVV+FSPAGKPFSF
Sbjct: 5   KKTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELVTLCGAEVGVVIFSPAGKPFSF 64

Query: 69  AHPCIESVANKFLDENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAEKEKGKALE 128
            HP +ESVAN+ L +NP   DNTHPLVEAHRR+RINELNQQ+N+L +QL+ EKE+GKAL+
Sbjct: 65  GHPSVESVANRLLKQNPPQGDNTHPLVEAHRRVRINELNQQYNELFNQLEVEKERGKALQ 124

Query: 129 KLKKVRGNNGRGWWESPTEELGIEELQQVDGSLGELYQNVCHELKERGVLGSSSYSASNT 188
           KL K RGN  +GWWE P+EEL  +ELQ+++ SL EL++N+ + +KE+ V G+SS S++  
Sbjct: 125 KLTKARGN--KGWWEVPSEELNHQELQKMNQSLEELHKNLFNRIKEKAVTGASSSSSAFL 184

Query: 189 LGFDHAGREETIPFNILATGAAAAAGPSSATY 221
           +G    G   T PF + A G      P S  Y
Sbjct: 185 IGNSTQG---TNPFVLNAGGIDPLTFPPSYGY 211

[Close]

BLAST of Carg15019-RA vs. TrEMBL
Match: tr|A0A2N9IIE1|A0A2N9IIE1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS51762 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.0e-64
Identity = 129/193 (66.84%), Postives = 157/193 (81.35%), Query Frame = 0


Query: 9   KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 68
           K+TKGRQKIEMKKIENED+RLITFSKRRSGIYKKASEL TLCGAEVGVV+FSPAGKPFSF
Sbjct: 5   KKTKGRQKIEMKKIENEDNRLITFSKRRSGIYKKASELVTLCGAEVGVVIFSPAGKPFSF 64

Query: 69  AHPCIESVANKFLDENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAEKEKGKALE 128
            HP +ESVAN+FL +NP   DNTHPLVEAHRR+RINELNQQ+N L SQL+ E E+GKAL+
Sbjct: 65  GHPSVESVANRFLKQNPPQGDNTHPLVEAHRRVRINELNQQYNDLSSQLEVENERGKALQ 124

Query: 129 KLKKVRGNNGRGWWESPTEELGIEELQQVDGSLGELYQNVCHELKERGVLGSSSYSASNT 188
           KL K RGN  +GWWE P+EEL   ELQ+++ SL EL++N+ + +KE+ + G+SS S++  
Sbjct: 125 KLTKARGN--KGWWEVPSEELNHHELQKMNQSLEELHKNLFNRIKEKVIAGASSSSSAFL 184

Query: 189 LGFDHAGREETIP 202
           +G    G    +P
Sbjct: 185 IGNSTQGTNRFVP 195

[Close]

BLAST of Carg15019-RA vs. TrEMBL
Match: tr|A0A2N9J3R9|A0A2N9J3R9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58863 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.5e-63
Identity = 130/212 (61.32%), Postives = 166/212 (78.30%), Query Frame = 0


Query: 9   KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 68
           K+TKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASE+ TLCGAEVGV++FSP+GKP+SF
Sbjct: 5   KKTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASEMVTLCGAEVGVLIFSPSGKPYSF 64

Query: 69  AHPCIESVANKFLDENPQPNDNTHPLVEAHRRLRINELNQQHNQLLSQLDAEKEKGKALE 128
            HP +ESVAN+FL +NP   DNTHPLVEAHR++RI+ELNQQ+N+L+SQL+AEKE+GK L+
Sbjct: 65  GHPSVESVANRFLKQNPPEGDNTHPLVEAHRKVRISELNQQYNELVSQLEAEKERGKELQ 124

Query: 129 KLKKVRGNNGRGWWESPTEELGIEELQQVDGSLGELYQNVCHELKERGVLGSSSYSASNT 188
           KL K R N  +GWWE P+E+L  +ELQQ++  L EL++N+C+ +KE+ + G+ S S++  
Sbjct: 125 KLTKAREN--KGWWEVPSEKLSNQELQQMNAKLEELHKNLCNRIKEKAIAGAPSSSSTYL 184

Query: 189 LGFDHAGREETIPFNILATGAAAAAGPSSATY 221
            G    G   T PF   A+G   +A P    Y
Sbjct: 185 AGNSIQG---TNPFVPNASGNDPSAFPPGYGY 211

The following BLAST results are available for this feature:

BLAST of Carg15019-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926768.1	8.9e-113	100.00	agamous-like MADS-box protein AGL61 [Cucurbita moschata]	[more]
XP_023003356.1	1.5e-112	99.52	agamous-like MADS-box protein AGL62 [Cucurbita maxima]	[more]
XP_023518350.1	2.0e-112	99.52	agamous-like MADS-box protein AGL62 [Cucurbita pepo subsp. pepo]	[more]
XP_022146674.1	8.1e-90	82.33	agamous-like MADS-box protein AGL61 [Momordica charantia]	[more]
XP_011658286.1	1.7e-76	69.49	PREDICTED: agamous-like MADS-box protein AGL61 [Cucumis sativus] >KGN49381.1 hyp...	[more]

BLAST of Carg15019-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G60440.1	1.8e-35	48.52	AGAMOUS-like 62	[more]
AT2G24840.1	1.1e-32	45.12	AGAMOUS-like 61	[more]
AT3G04100.1	8.7e-30	40.83	AGAMOUS-like 57	[more]
AT4G36590.1	1.8e-27	40.23	MADS-box transcription factor family protein	[more]
AT1G29962.1	3.1e-27	37.57	AGAMOUS-like 64	[more]

BLAST of Carg15019-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FKK2\|AGL62_ARATH	3.3e-34	48.52	Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=...	[more]
sp\|Q4PSU4\|AGL61_ARATH	2.0e-31	45.12	Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=...	[more]
sp\|O64703\|AGL29_ARATH	1.1e-21	37.14	Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana OX=3702 GN=AGL29 PE=...	[more]
sp\|Q9LMM8\|AGL28_ARATH	5.3e-16	46.53	Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana OX=3702 GN=AGL28 PE=...	[more]
sp\|O80807\|AGL23_ARATH	2.6e-15	29.73	Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=...	[more]

BLAST of Carg15019-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KNT7\|A0A0A0KNT7_CUCSA	1.2e-76	69.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G522745 PE=4 SV=1	[more]
tr\|A0A2P4L9V9\|A0A2P4L9V9_QUESU	1.4e-66	66.03	Agamous-like mads-box protein agl62 OS=Quercus suber OX=58331 GN=CFP56_18171 PE=...	[more]
tr\|A0A2N9GTK8\|A0A2N9GTK8_FAGSY	9.2e-66	64.62	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30506 PE=4 SV=1	[more]
tr\|A0A2N9IIE1\|A0A2N9IIE1_FAGSY	1.0e-64	66.84	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS51762 PE=4 SV=1	[more]
tr\|A0A2N9J3R9\|A0A2N9J3R9_FAGSY	1.5e-63	61.32	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58863 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0046983	protein dimerization activity
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0045944	positive regulation of transcription from RNA polymerase II promoter

Vocabulary: **INTERPRO**
Term	Definition
IPR033896	MADS_MEF2-like
IPR036879	TF_MADSbox_sf
IPR002100	TF_MADSbox

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription from RNA polymerase II promoter
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg15019	Carg15019	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg15019-RA.CDS.1	Carg15019-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg15019-RA.exon.1	Carg15019-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg15019-RA	Carg15019-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 103..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 214..245
None	No IPR available	PANTHER	PTHR11945:SF185	AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED	coord: 10..174
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 10..174
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 49..70 score: 43.8 coord: 34..49 score: 61.67 coord: 14..34 score: 51.0
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 12..71 e-value: 1.2E-30 score: 117.8
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 21..68 e-value: 3.5E-24 score: 83.9
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 12..72 score: 25.357
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	G3DSA:3.40.1810.10		coord: 24..104 e-value: 2.5E-23 score: 83.9
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	SSF55455	SRF-like	coord: 13..88
IPR033896	MADS MEF2-like	CDD	cd00265	MADS_MEF2_like	coord: 13..84 e-value: 3.65912E-33 score: 115.727