Carg14706-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTTTATAAAAAAAAACTTAAAAAAGAAAAACAATTAATTCAAAAAGTGGACACGAATAAACTCGGAGAAAGAGCATGAAGGACAGCGGTTGTCAACGAACAGAGAAACGGACCTCCTCCAGTTTGCGATGAGATCCGTCGGAAACAGAGCAAACCCTTCATCAACCTCCAATCCCTTCACTTTTCTAATTTCCCAACCCTAATTCCCTCATTCAATTTGATTCTTCTCTTTTTGCTTTCAATTTTCCCCTTTTTATCTGTTTTTTCGTTCTTCTCCCTGGTAATTGCAGGTTAAATCCCGATGGGAAAGTTCTCTTCTCGCAAGAAGGGGCGTTCCAAGACTTCTTCATCCCAGGTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACGGGTAATGTTCTAAGATTATGCTGTAGTTTGGCTTATGAATTCACGAACATATCTGGGAAATCTTTGCTTGGTCGATTTGTATGCTTGAATTTTGAGTTTTTGTGTATGAGTTTCTTCTTCGTCTTTCACTTTTTTAGTTCTGCTTTCCGCTGGCAATTGGTAAATGTGATATTGGTATTGTGGTTGCGGTTTAACATATGAATGTTTGCTCCATCTCTTGCCTCTCTTACCTCATATACGTTTGTTTTGATGCCGATGTGAATTTGTTTTGCGTCCTTTTCACCTTTTTGGCTCAAACCATGAAGAGAAGTAGGAGAAAGAGTAGGAGTAGTAGGAAACTGAAGTCCAAGAAGCTGCGTTATCGCCATGATTCTCCCTCTGGCTCTGACAATGATTCTGAAACCTCAACTTCATTGTCTTCTTCTAGCACGGAGGATGACGAAAAAGTGGGAAGATCTCGATCCAAGATGCGTAAGAATGCTAAAAAGAGAGCCAAGAAGCGATCTCATGACCGTCAAAGAAGGGATTACTCCCCTCATCCCAGAAAGAGGAAGCATTCAAAGAGAGACGAGTGTTGTGAGATGAAGAAGAGCAATAAAAAGAAGCGTAAACGAGATGCCAGTGTTCGTGCCACAAGTAGTGACTCTTTGTGCTGCTCGACTTGTGGAGATGGGAGTACAACCAGCAATGAGAGGGAAATCGATAGGCGTAAGGGCAGATCTAGAAAGAGGAAAGAAAATATGGGGAAGATTGAAAGGAGTCAGTATCGGTCAAACAGTCATTCGCCATGCTCTTTATGTAGTGAAGGTAGTGATCATCAGAATGAGGTTGAGGATGTCTGTTATGTTGAAAATAACTTTAGACGACTAAGATCAGTAATCGTTGTAGTTGGAGAGGAAGATAAATTAGAGACGTTTGATGGGAATGAACTACAAGAAAATGTGACGCATCAACCTGATCATGACCACCCTTCTTTTGGGGATATAAACAGAAATGATGGGATGAGTAATAGAGAATTAGATAATCTTATATCTGAAGAGGCACCAGTGATTATAACTGACAATAGAAACTCTATAGTTGTGAAAGAGGATGGAGTTCAAAATGAAGGAAGCAACAATAACCATGGAGGATCAACTCATGACCATCCTTTATATGAAAGAAAGAATGGTTGTTCTGGAAACACCAACGACACAAACTGTATCGACTTAGAGTCGATTTTAAGACAGAGGGCTTTGGAAAACCTAAGAAAGTACAAACGAGTGCTCCCAAGGAATGTGGAAACTCCTTCTAATTGCGAAGTTGACAATAGTAATGATGCGAAGCAACTGGACTCCCCTGTCTCTAAGTCGGCTCACGTGACTTCCCCTAGGGATGAGGCTGGGATAGATGGTAACAGGTTCTCTAGACAAGGTGGAGGGAACGCTGTAAATTCAATGATAATTGAAAATGGTGTTAAATCTACCGATGAAATGGACTCGGCCGTTGCATCTACATATGATCCTGTCTATTCTTCACAGCGCTTGGGTAAGATTTCCAATGGAAGCAATGATATGAATGAACTGAAGAAGCATATTTCGTCAGTAGACCAGGAGGTTGTAAATGATAGTATTTGCCATATGGCAGATGCAGATATTTGTCCAACAACTAACAGAAGCAATTTGGTTATTGCAGCTTTGAAGCCCGAGTCGAATGTTGATTCTCTTACCGAGCAGGCATCTGCCTCTCAGGAATCTATCCAAACAAAGCCATCTAAATCCGACATGGGCGATGATGAAACCGCTCAAACTCAGACCCAGATGAGGAACAATGATGTTCAAAACATTGGTGATGGTTTTGGATCATCAGCTCACAAGCCATCATCTTCTTCTTCCCTTAATTCTATTTCAGGAGAAAATCTCTTGAATGAGTCCAGACACGAGAGTGGTGAAGGCTCACAGTTCGAACAGAAAACGATGTCGGTAAAGCGAGGTGGTGAAATGGTGCAGGTGAGAATATTGAGTACTGACTAAATTTATATATTCAGCAGGGAGTATAATTGTACTAGTTTTGTTAAGAACTTGGAACGGATCTGCAAATATTCATTTCAGGTTAACTACAAGGTGTACATTCCAAAGAGAGCTCCTGGTTTGAGTAGGAGGCAACTCAAGCGGTGACTTAAGATCCATGATTTTGCAGCCTTGTAGGATGCTCCTGTTGCTTGCCATTCCAAAGATTGTGAAGTTTTGGATTAGAATTTTCCATTCGCTTTCTGTGCGAAGGATCTATATAGCCTTGAAATATGAACAATAATTAGTGCAGCCAATTGGTAGCATTTGTCTGTTAACTTTTCCACGAGAATGATCAATATGACCATTTGATCAAACGAGAAAACTTGGTGATGTTCGGAGCCAGTGATGATTCACACAGCTTGACAAATCTATCCTGAAATTTTGAAATGATATCGACAATGCTTTTTTT TTTTTATAAAAAAAAACTTAAAAAAGAAAAACAATTAATTCAAAAAGTGGACACGAATAAACTCGGAGAAAGAGCATGAAGGACAGCGGTTGTCAACGAACAGAGAAACGGACCTCCTCCAGTTTGCGATGAGATCCGTCGGAAACAGAGCAAACCCTTCATCAACCTCCAATCCCTTCACTTTTCTAATTTCCCAACCCTAATTCCCTCATTCAATTTGATTCTTCTCTTTTTGCTTTCAATTTTCCCCTTTTTATCTGTTTTTTCGTTCTTCTCCCTGGTAATTGCAGGTTAAATCCCGATGGGAAAGTTCTCTTCTCGCAAGAAGGGGCGTTCCAAGACTTCTTCATCCCAGAGAAGTAGGAGAAAGAGTAGGAGTAGTAGGAAACTGAAGTCCAAGAAGCTGCGTTATCGCCATGATTCTCCCTCTGGCTCTGACAATGATTCTGAAACCTCAACTTCATTGTCTTCTTCTAGCACGGAGGATGACGAAAAAGTGGGAAGATCTCGATCCAAGATGCGTAAGAATGCTAAAAAGAGAGCCAAGAAGCGATCTCATGACCGTCAAAGAAGGGATTACTCCCCTCATCCCAGAAAGAGGAAGCATTCAAAGAGAGACGAGTGTTGTGAGATGAAGAAGAGCAATAAAAAGAAGCGTAAACGAGATGCCAGTGTTCGTGCCACAAGTAGTGACTCTTTGTGCTGCTCGACTTGTGGAGATGGGAGTACAACCAGCAATGAGAGGGAAATCGATAGGCGTAAGGGCAGATCTAGAAAGAGGAAAGAAAATATGGGGAAGATTGAAAGGAGTCAGTATCGGTCAAACAGTCATTCGCCATGCTCTTTATGTAGTGAAGGTAGTGATCATCAGAATGAGGTTGAGGATGTCTGTTATGTTGAAAATAACTTTAGACGACTAAGATCAGTAATCGTTGTAGTTGGAGAGGAAGATAAATTAGAGACGTTTGATGGGAATGAACTACAAGAAAATGTGACGCATCAACCTGATCATGACCACCCTTCTTTTGGGGATATAAACAGAAATGATGGGATGAGTAATAGAGAATTAGATAATCTTATATCTGAAGAGGCACCAGTGATTATAACTGACAATAGAAACTCTATAGTTGTGAAAGAGGATGGAGTTCAAAATGAAGGAAGCAACAATAACCATGGAGGATCAACTCATGACCATCCTTTATATGAAAGAAAGAATGGTTGTTCTGGAAACACCAACGACACAAACTGTATCGACTTAGAGTCGATTTTAAGACAGAGGGCTTTGGAAAACCTAAGAAAGTACAAACGAGTGCTCCCAAGGAATGTGGAAACTCCTTCTAATTGCGAAGTTGACAATAGTAATGATGCGAAGCAACTGGACTCCCCTGTCTCTAAGTCGGCTCACGTGACTTCCCCTAGGGATGAGGCTGGGATAGATGGTAACAGGTTCTCTAGACAAGGTGGAGGGAACGCTGTAAATTCAATGATAATTGAAAATGGTGTTAAATCTACCGATGAAATGGACTCGGCCGTTGCATCTACATATGATCCTGTCTATTCTTCACAGCGCTTGGGTAAGATTTCCAATGGAAGCAATGATATGAATGAACTGAAGAAGCATATTTCGTCAGTAGACCAGGAGGTTGTAAATGATAGTATTTGCCATATGGCAGATGCAGATATTTGTCCAACAACTAACAGAAGCAATTTGGTTATTGCAGCTTTGAAGCCCGAGTCGAATGTTGATTCTCTTACCGAGCAGGCATCTGCCTCTCAGGAATCTATCCAAACAAAGCCATCTAAATCCGACATGGGCGATGATGAAACCGCTCAAACTCAGACCCAGATGAGGAACAATGATGTTCAAAACATTGGTGATGGTTTTGGATCATCAGCTCACAAGCCATCATCTTCTTCTTCCCTTAATTCTATTTCAGGAGAAAATCTCTTGAATGAGTCCAGACACGAGAGTGGTGAAGGCTCACAGTTCGAACAGAAAACGATGTCGGTAAAGCGAGGTGGTGAAATGGTGCAGGTTAACTACAAGGTGTACATTCCAAAGAGAGCTCCTGGTTTGAGTAGGAGGCAACTCAAGCGGTGACTTAAGATCCATGATTTTGCAGCCTTGTAGGATGCTCCTGTTGCTTGCCATTCCAAAGATTGTGAAGTTTTGGATTAGAATTTTCCATTCGCTTTCTGTGCGAAGGATCTATATAGCCTTGAAATATGAACAATAATTAGTGCAGCCAATTGGTAGCATTTGTCTGTTAACTTTTCCACGAGAATGATCAATATGACCATTTGATCAAACGAGAAAACTTGGTGATGTTCGGAGCCAGTGATGATTCACACAGCTTGACAAATCTATCCTGAAATTTTGAAATGATATCGACAATGCTTTTTTT ATGGGAAAGTTCTCTTCTCGCAAGAAGGGGCGTTCCAAGACTTCTTCATCCCAGAGAAGTAGGAGAAAGAGTAGGAGTAGTAGGAAACTGAAGTCCAAGAAGCTGCGTTATCGCCATGATTCTCCCTCTGGCTCTGACAATGATTCTGAAACCTCAACTTCATTGTCTTCTTCTAGCACGGAGGATGACGAAAAAGTGGGAAGATCTCGATCCAAGATGCGTAAGAATGCTAAAAAGAGAGCCAAGAAGCGATCTCATGACCGTCAAAGAAGGGATTACTCCCCTCATCCCAGAAAGAGGAAGCATTCAAAGAGAGACGAGTGTTGTGAGATGAAGAAGAGCAATAAAAAGAAGCGTAAACGAGATGCCAGTGTTCGTGCCACAAGTAGTGACTCTTTGTGCTGCTCGACTTGTGGAGATGGGAGTACAACCAGCAATGAGAGGGAAATCGATAGGCGTAAGGGCAGATCTAGAAAGAGGAAAGAAAATATGGGGAAGATTGAAAGGAGTCAGTATCGGTCAAACAGTCATTCGCCATGCTCTTTATGTAGTGAAGGTAGTGATCATCAGAATGAGGTTGAGGATGTCTGTTATGTTGAAAATAACTTTAGACGACTAAGATCAGTAATCGTTGTAGTTGGAGAGGAAGATAAATTAGAGACGTTTGATGGGAATGAACTACAAGAAAATGTGACGCATCAACCTGATCATGACCACCCTTCTTTTGGGGATATAAACAGAAATGATGGGATGAGTAATAGAGAATTAGATAATCTTATATCTGAAGAGGCACCAGTGATTATAACTGACAATAGAAACTCTATAGTTGTGAAAGAGGATGGAGTTCAAAATGAAGGAAGCAACAATAACCATGGAGGATCAACTCATGACCATCCTTTATATGAAAGAAAGAATGGTTGTTCTGGAAACACCAACGACACAAACTGTATCGACTTAGAGTCGATTTTAAGACAGAGGGCTTTGGAAAACCTAAGAAAGTACAAACGAGTGCTCCCAAGGAATGTGGAAACTCCTTCTAATTGCGAAGTTGACAATAGTAATGATGCGAAGCAACTGGACTCCCCTGTCTCTAAGTCGGCTCACGTGACTTCCCCTAGGGATGAGGCTGGGATAGATGGTAACAGGTTCTCTAGACAAGGTGGAGGGAACGCTGTAAATTCAATGATAATTGAAAATGGTGTTAAATCTACCGATGAAATGGACTCGGCCGTTGCATCTACATATGATCCTGTCTATTCTTCACAGCGCTTGGGTAAGATTTCCAATGGAAGCAATGATATGAATGAACTGAAGAAGCATATTTCGTCAGTAGACCAGGAGGTTGTAAATGATAGTATTTGCCATATGGCAGATGCAGATATTTGTCCAACAACTAACAGAAGCAATTTGGTTATTGCAGCTTTGAAGCCCGAGTCGAATGTTGATTCTCTTACCGAGCAGGCATCTGCCTCTCAGGAATCTATCCAAACAAAGCCATCTAAATCCGACATGGGCGATGATGAAACCGCTCAAACTCAGACCCAGATGAGGAACAATGATGTTCAAAACATTGGTGATGGTTTTGGATCATCAGCTCACAAGCCATCATCTTCTTCTTCCCTTAATTCTATTTCAGGAGAAAATCTCTTGAATGAGTCCAGACACGAGAGTGGTGAAGGCTCACAGTTCGAACAGAAAACGATGTCGGTAAAGCGAGGTGGTGAAATGGTGCAGGTTAACTACAAGGTGTACATTCCAAAGAGAGCTCCTGGTTTGAGTAGGAGGCAACTCAAGCGGTGA MGKFSSRKKGRSKTSSSQRSRRKSRSSRKLKSKKLRYRHDSPSGSDNDSETSTSLSSSSTEDDEKVGRSRSKMRKNAKKRAKKRSHDRQRRDYSPHPRKRKHSKRDECCEMKKSNKKKRKRDASVRATSSDSLCCSTCGDGSTTSNEREIDRRKGRSRKRKENMGKIERSQYRSNSHSPCSLCSEGSDHQNEVEDVCYVENNFRRLRSVIVVVGEEDKLETFDGNELQENVTHQPDHDHPSFGDINRNDGMSNRELDNLISEEAPVIITDNRNSIVVKEDGVQNEGSNNNHGGSTHDHPLYERKNGCSGNTNDTNCIDLESILRQRALENLRKYKRVLPRNVETPSNCEVDNSNDAKQLDSPVSKSAHVTSPRDEAGIDGNRFSRQGGGNAVNSMIIENGVKSTDEMDSAVASTYDPVYSSQRLGKISNGSNDMNELKKHISSVDQEVVNDSICHMADADICPTTNRSNLVIAALKPESNVDSLTEQASASQESIQTKPSKSDMGDDETAQTQTQMRNNDVQNIGDGFGSSAHKPSSSSSLNSISGENLLNESRHESGEGSQFEQKTMSVKRGGEMVQVNYKVYIPKRAPGLSRRQLKR
BLAST of Carg14706-RA vs. NCBI nr
Match: XP_023525531.1 (uncharacterized protein LOC111789118 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 806.2 bits (2081), Expect = 7.4e-230 Identity = 417/435 (95.86%), Postives = 428/435 (98.39%), Query Frame = 0
BLAST of Carg14706-RA vs. NCBI nr
Match: XP_022941379.1 (pre-mRNA-splicing factor CWC22 homolog isoform X1 [Cucurbita moschata]) HSP 1 Score: 803.5 bits (2074), Expect = 4.8e-229 Identity = 418/437 (95.65%), Postives = 428/437 (97.94%), Query Frame = 0
BLAST of Carg14706-RA vs. NCBI nr
Match: XP_022941380.1 (pre-mRNA-splicing factor CWC22 homolog isoform X2 [Cucurbita moschata]) HSP 1 Score: 803.5 bits (2074), Expect = 4.8e-229 Identity = 418/437 (95.65%), Postives = 428/437 (97.94%), Query Frame = 0
BLAST of Carg14706-RA vs. NCBI nr
Match: XP_023525532.1 (pre-mRNA-splicing factor CWC22 homolog isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 696.4 bits (1796), Expect = 8.3e-197 Identity = 373/435 (85.75%), Postives = 381/435 (87.59%), Query Frame = 0
BLAST of Carg14706-RA vs. NCBI nr
Match: XP_022941381.1 (pre-mRNA-splicing factor CWC22 homolog isoform X3 [Cucurbita moschata]) HSP 1 Score: 686.8 bits (1771), Expect = 6.6e-194 Identity = 370/437 (84.67%), Postives = 379/437 (86.73%), Query Frame = 0
BLAST of Carg14706-RA vs. TrEMBL
Match: tr|A0A0A0L248|A0A0A0L248_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G630530 PE=4 SV=1) HSP 1 Score: 595.1 bits (1533), Expect = 1.7e-166 Identity = 334/478 (69.87%), Postives = 389/478 (81.38%), Query Frame = 0
BLAST of Carg14706-RA vs. TrEMBL
Match: tr|A0A1S3CKB4|A0A1S3CKB4_CUCME (uncharacterized protein LOC103501777 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501777 PE=4 SV=1) HSP 1 Score: 578.9 bits (1491), Expect = 1.3e-161 Identity = 328/478 (68.62%), Postives = 380/478 (79.50%), Query Frame = 0
BLAST of Carg14706-RA vs. TrEMBL
Match: tr|A0A1S3CJV0|A0A1S3CJV0_CUCME (uncharacterized protein LOC103501777 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501777 PE=4 SV=1) HSP 1 Score: 578.9 bits (1491), Expect = 1.3e-161 Identity = 328/478 (68.62%), Postives = 380/478 (79.50%), Query Frame = 0
BLAST of Carg14706-RA vs. TrEMBL
Match: tr|A0A1S3CJV2|A0A1S3CJV2_CUCME (uncharacterized protein LOC103501777 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103501777 PE=4 SV=1) HSP 1 Score: 481.9 bits (1239), Expect = 2.1e-132 Identity = 289/478 (60.46%), Postives = 337/478 (70.50%), Query Frame = 0
BLAST of Carg14706-RA vs. TrEMBL
Match: tr|A0A1Q3BWC6|A0A1Q3BWC6_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_15812 PE=4 SV=1) HSP 1 Score: 143.7 bits (361), Expect = 1.4e-30 Identity = 163/497 (32.80%), Postives = 246/497 (49.50%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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