Carg14081-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg14081-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ribosomal RNA small subunit methyltransferase G
Location	Cucurbita_argyrosperma_scaffold_097 : 723388 .. 725682 (-)
Sequence length	1220

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTACCCCTCTCTTCCATCTCAATTCCAATTCCAATTCCAATTCCAATTCCATTTCCAATTCTCTTTTCCCATCCATTTCTCTTTCTTCTTCTTTGTCCTTTGCCTCTTCACCCACTTTCTCATTTTTTCTTCTTCCCCCACCTCCTCATCTTTCTTCTTCATTACCCATCTCTTTCCCACATCTAACTTTCCTTTCTTTCCGCCTCTTTCCCCTTCTGGGTTTCTCATTTTTCTTCCTTACCATCTATGAAGAAGATGAAAGGGGCTGCCTCCCAACACCCTTCTGTGTTTGACGATTCCAAGATCAGATTCAAGCATCAGACTCTCCTCCAAGATTATCACGAATTGGAGAAGGTAATTTTTGTTTTCTGCTTCTGCGGATTTCCGGATTTCTTTGTTGTTTCTACCAGATCTTCCTTTTATTTTATTCATATGGGGTTTGATTGTGTTCTTCAGATCTTTTTCTCTGAAATTGATTTGGTTTCTTTCTGTTTTGAATGGAATTTCTGGTCTGGAAGAGGGGAATATGGTTTGATCTAGGAGTTATCAATCGTGAAAATACTAGTTTTTTTTTTCTTTTTTTCTTTTTGGTTTTCTGGGCTAGGCTAATTCATCCTTGTGTCTGAACTGGCTATTTCCTTTGGTTAAAACTCTCGATTTGGTTGCTCAAACAATAATATGAGATAAAAGTTCTGTCGATTCTTTGTGTTGAATTTTAAAATACCTATCTCTAGGCTAAAAGAGGGAAGTTCGTCTATAATTTTCTTCCTATCTGGAAAATTGATGCTTTAGGTTTGCTTCCATTTGTTTATTTTCTTGGTTCTGAGAGATTGATACCCTTAAAACTGCCATGACCTCCTCTAGTGATATCATCTTTAAGTAATTACCAATCAATGAACTTTGGATCATTCTAAACCTACCATTGATTTCCTTGAAGAGTCGAGTCTAGTAGTTTCCTCACTACTTTACAAGTACATGTTCTTGAACACCTGATCTTATTTGTGCGGTGTTCTATTTTGGTTTTGTTTCACGTAAGTCTAATACTTGGACTAGTTGTTGTCTTCACTTTTGTGAAATTTCAAGAGAAATTTGATTCTGGTTATGTAAAATTTGCCACCCCATGTTCTGAGTTTGTGCTGGATAGATCAGTTTAAGACTCGGGAATGTTATGGATGAACAAACAATTGAAAGTACTTCTTGTGTTCTTCCAGGAAACAGAAACTGCTAAGAGGAAATTACAGATGATGAAGCAAAAGAAGATGACCCTGATGGCAGAAGTCCGGTATAATCTTTACATAATTACGTTGTATTTGTGTGGATCTTCATCAGGAGTAACTGAATTGTCCAGAACTAACTATGAGTCTACGTTTCTATTGAAGGTTCTTGAAGAAGAGATACGAGTACCTAATGAAGAACCAGTTGCCAAACGACCATTCAAATGGAAATCCAGTACAGCAGAAGCAACTTAACAAACAAGTGGCTAACAATACTAAGAAGGGGAAGAATGGTTCGAGAAGAAGACCTGCGTTGCACCCCCTCCCGACGATCTCTGATATAAACCAAAAGGAAAGAATCAACCGACGAATTGATATTCCTCCACAGAGTTCTACTCCGATTCCTGTCCTTGACTTGAACCAGAAGGCAAAGACTAGGAAGAAAGCCAATCAACAGAATTCAACACCAGTTTTTGACTTGAACCAGAAGGAAAGAATGTACAGTGGGAGAGATGCTAGCGAGCGAACCATCACTCCATTTTTCGACTTGAACCAAATTTCGGTAATTGACTAGGACTTATTTGACCAACAATTTTATGATATAGCTGAACCCTGCAAACGTAATTTTTACTACAATTTCACCTCTCCTCCTCCCTAACAATCTCTACATTATTTTGGCTCAGATGGAGGAAGAGGAATTGCAGACCCATTACGATACACTGAGAGCTGATGAGCTGAAGAAAAGCCTTCTTCGAGGTGGGAACGATGAGCAGCAAAATGATATCAAGATTTCGGCGTGCAGGACTGTTGGGGATGGTCCAAGTCGAGCTGGTAAAAGAAAGATTTCATGGCAAGACCAGGTGGCTTTAAGGGTTTGAGCTCATTTTTATCTCTAGTGTCACTTAGAACTACAATTTGGAAGAAGGGCTTCAGGCATCCTAGAAGCCACAGTTAATTGTAATTCCTTCTTTGATTCTGTATTCTTCTATTGTGAAGGGAAAGTAGTATTTGTACATGTTAATACATTTAAAAAAGAATGGTGATGAGATATCGAGAAGAATCAAAGTTGCAAATCCTTC

mRNA sequence

CCCTACCCCTCTCTTCCATCTCAATTCCAATTCCAATTCCAATTCCAATTCCATTTCCAATTCTCTTTTCCCATCCATTTCTCTTTCTTCTTCTTTGTCCTTTGCCTCTTCACCCACTTTCTCATTTTTTCTTCTTCCCCCACCTCCTCATCTTTCTTCTTCATTACCCATCTCTTTCCCACATCTAACTTTCCTTTCTTTCCGCCTCTTTCCCCTTCTGGGTTTCTCATTTTTCTTCCTTACCATCTATGAAGAAGATGAAAGGGGCTGCCTCCCAACACCCTTCTGTGTTTGACGATTCCAAGATCAGATTCAAGCATCAGACTCTCCTCCAAGATTATCACGAATTGGAGAAGGAAACAGAAACTGCTAAGAGGAAATTACAGATGATGAAGCAAAAGAAGATGACCCTGATGGCAGAAGTCCGGTTCTTGAAGAAGAGATACGAGTACCTAATGAAGAACCAGTTGCCAAACGACCATTCAAATGGAAATCCAGTACAGCAGAAGCAACTTAACAAACAAGTGGCTAACAATACTAAGAAGGGGAAGAATGGTTCGAGAAGAAGACCTGCGTTGCACCCCCTCCCGACGATCTCTGATATAAACCAAAAGGAAAGAATCAACCGACGAATTGATATTCCTCCACAGAGTTCTACTCCGATTCCTGTCCTTGACTTGAACCAGAAGGCAAAGACTAGGAAGAAAGCCAATCAACAGAATTCAACACCAGTTTTTGACTTGAACCAGAAGGAAAGAATGTACAGTGGGAGAGATGCTAGCGAGCGAACCATCACTCCATTTTTCGACTTGAACCAAATTTCGATGGAGGAAGAGGAATTGCAGACCCATTACGATACACTGAGAGCTGATGAGCTGAAGAAAAGCCTTCTTCGAGGTGGGAACGATGAGCAGCAAAATGATATCAAGATTTCGGCGTGCAGGACTGTTGGGGATGGTCCAAGTCGAGCTGGTAAAAGAAAGATTTCATGGCAAGACCAGGTGGCTTTAAGGGTTTGAGCTCATTTTTATCTCTAGTGTCACTTAGAACTACAATTTGGAAGAAGGGCTTCAGGCATCCTAGAAGCCACAGTTAATTGTAATTCCTTCTTTGATTCTGTATTCTTCTATTGTGAAGGGAAAGTAGTATTTGTACATGTTAATACATTTAAAAAAGAATGGTGATGAGATATCGAGAAGAATCAAAGTTGCAAATCCTTC

Coding sequence (CDS)

ATGAAGAAGATGAAAGGGGCTGCCTCCCAACACCCTTCTGTGTTTGACGATTCCAAGATCAGATTCAAGCATCAGACTCTCCTCCAAGATTATCACGAATTGGAGAAGGAAACAGAAACTGCTAAGAGGAAATTACAGATGATGAAGCAAAAGAAGATGACCCTGATGGCAGAAGTCCGGTTCTTGAAGAAGAGATACGAGTACCTAATGAAGAACCAGTTGCCAAACGACCATTCAAATGGAAATCCAGTACAGCAGAAGCAACTTAACAAACAAGTGGCTAACAATACTAAGAAGGGGAAGAATGGTTCGAGAAGAAGACCTGCGTTGCACCCCCTCCCGACGATCTCTGATATAAACCAAAAGGAAAGAATCAACCGACGAATTGATATTCCTCCACAGAGTTCTACTCCGATTCCTGTCCTTGACTTGAACCAGAAGGCAAAGACTAGGAAGAAAGCCAATCAACAGAATTCAACACCAGTTTTTGACTTGAACCAGAAGGAAAGAATGTACAGTGGGAGAGATGCTAGCGAGCGAACCATCACTCCATTTTTCGACTTGAACCAAATTTCGATGGAGGAAGAGGAATTGCAGACCCATTACGATACACTGAGAGCTGATGAGCTGAAGAAAAGCCTTCTTCGAGGTGGGAACGATGAGCAGCAAAATGATATCAAGATTTCGGCGTGCAGGACTGTTGGGGATGGTCCAAGTCGAGCTGGTAAAAGAAAGATTTCATGGCAAGACCAGGTGGCTTTAAGGGTTTGA

Protein sequence

MKKMKGAASQHPSVFDDSKIRFKHQTLLQDYHELEKETETAKRKLQMMKQKKMTLMAEVRFLKKRYEYLMKNQLPNDHSNGNPVQQKQLNKQVANNTKKGKNGSRRRPALHPLPTISDINQKERINRRIDIPPQSSTPIPVLDLNQKAKTRKKANQQNSTPVFDLNQKERMYSGRDASERTITPFFDLNQISMEEEELQTHYDTLRADELKKSLLRGGNDEQQNDIKISACRTVGDGPSRAGKRKISWQDQVALRV

Homology

[Close]

BLAST of Carg14081-RA vs. NCBI nr
Match: XP_022932147.1 (uncharacterized protein LOC111438466 [Cucurbita moschata])

HSP 1 Score: 388.3 bits (996), Expect = 2.1e-104
Identity = 253/256 (98.83%), Postives = 253/256 (98.83%), Query Frame = 0


Query: 1   MKKMKGAASQHPSVFDDSKIRFKHQTLLQDYHELEKETETAKRKLQMMKQKKMTLMAEVR 60
           MKKMKGAASQHPSVFDDSKIRFKHQTLLQDYHELEKETETAKRKLQMMKQKKMTLMAEVR
Sbjct: 1   MKKMKGAASQHPSVFDDSKIRFKHQTLLQDYHELEKETETAKRKLQMMKQKKMTLMAEVR 60

Query: 61  FLKKRYEYLMKNQLPNDHSNGNPVQQKQLNKQVANNTKKGKNGSRRRPALHPLPTISDIN 120
           FLKKRYEYLMKNQLPNDHSNGNPVQQKQLNKQVANNTKKGKNGSRRRPAL PLPTISDIN
Sbjct: 61  FLKKRYEYLMKNQLPNDHSNGNPVQQKQLNKQVANNTKKGKNGSRRRPALQPLPTISDIN 120

Query: 121 QKERINRRIDIPPQSSTPIPVLDLNQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           QKERINRRIDIPPQSSTPIPVLDLN  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 QKERINRRIDIPPQSSTPIPVLDLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXSMEEEELQTHYDTLRADELKKSLLRGGNDEQQNDIKISACRTVGDGPSR 240
           XXXXXXXXXXXSMEEEELQTHYDTLRADELKKSLLRGGNDEQQNDIKISACRTVGDGPSR
Sbjct: 181 XXXXXXXXXXXSMEEEELQTHYDTLRADELKKSLLRGGNDEQQNDIKISACRTVGDGPSR 240

Query: 241 AGKRKISWQDQVALRV 257
           AGKRKISWQDQVALRV
Sbjct: 241 AGKRKISWQDQVALRV 256

[Close]

BLAST of Carg14081-RA vs. NCBI nr
Match: XP_023531576.1 (uncharacterized protein LOC111793773 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 379.0 bits (972), Expect = 1.3e-101
Identity = 248/257 (96.50%), Postives = 251/257 (97.67%), Query Frame = 0


Query: 1   MKKMKGAASQHP-SVFDDSKIRFKHQTLLQDYHELEKETETAKRKLQMMKQKKMTLMAEV 60
           MKKMKGAASQHP SVFDDSKIRFKHQTLLQDYHELEKETETAKRKLQMMKQKKMTL+AEV
Sbjct: 1   MKKMKGAASQHPSSVFDDSKIRFKHQTLLQDYHELEKETETAKRKLQMMKQKKMTLIAEV 60

Query: 61  RFLKKRYEYLMKNQLPNDHSNGNPVQQKQLNKQVANNTKKGKNGSRRRPALHPLPTISDI 120
           RFL+KRYEYLMKNQLPNDHSNGNPVQQKQLNKQVANNTKKGKNGSRRRPAL PLPTISDI
Sbjct: 61  RFLRKRYEYLMKNQLPNDHSNGNPVQQKQLNKQVANNTKKGKNGSRRRPALQPLPTISDI 120

Query: 121 NQKERINRRIDIPPQSSTPIPVLDLNQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           NQKERINRRIDIPPQSST IPVLDLNQK   XXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 NQKERINRRIDIPPQSSTLIPVLDLNQKAKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXSMEEEELQTHYDTLRADELKKSLLRGGNDEQQNDIKISACRTVGDGPS 240
           XXXXXXXXXXXXSMEEEELQT+YDTLRADELKKSLLRGGNDEQQNDIKISACRTVGDGPS
Sbjct: 181 XXXXXXXXXXXXSMEEEELQTNYDTLRADELKKSLLRGGNDEQQNDIKISACRTVGDGPS 240

Query: 241 RAGKRKISWQDQVALRV 257
           RAGKRKISWQDQVALRV
Sbjct: 241 RAGKRKISWQDQVALRV 257

[Close]

BLAST of Carg14081-RA vs. NCBI nr
Match: XP_022965187.1 (uncharacterized protein LOC111465117 [Cucurbita maxima])

HSP 1 Score: 372.5 bits (955), Expect = 1.2e-99
Identity = 247/256 (96.48%), Postives = 250/256 (97.66%), Query Frame = 0


Query: 1   MKKMKGAASQHPSVFDDSKIRFKHQTLLQDYHELEKETETAKRKLQMMKQKKMTLMAEVR 60
           MKKMKGAASQHPSVFDDSKIRFKHQTLLQDYHELEKETETAKRKLQMMKQKKMTLMAEVR
Sbjct: 1   MKKMKGAASQHPSVFDDSKIRFKHQTLLQDYHELEKETETAKRKLQMMKQKKMTLMAEVR 60

Query: 61  FLKKRYEYLMKNQLPNDHSNGNPVQQKQLNKQVANNTKKGKNGSRRRPALHPLPTISDIN 120
           FL+KRYEYLMKNQLPNDHSNGNPVQQK  +KQVANNTKKGKNGSRRRPAL PLPTISDIN
Sbjct: 61  FLRKRYEYLMKNQLPNDHSNGNPVQQK--HKQVANNTKKGKNGSRRRPALQPLPTISDIN 120

Query: 121 QKERINRRIDIPPQSSTPIPVLDLNQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           QKERINRRIDIPPQSSTPIPVLDL   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 QKERINRRIDIPPQSSTPIPVLDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXSMEEEELQTHYDTLRADELKKSLLRGGNDEQQNDIKISACRTVGDGPSR 240
           XXXXXXXXXXXSMEEEELQTHYDTLRADELKKSLLRGGNDEQQNDIKISACRTVG+GPSR
Sbjct: 181 XXXXXXXXXXXSMEEEELQTHYDTLRADELKKSLLRGGNDEQQNDIKISACRTVGEGPSR 240

Query: 241 AGKRKISWQDQVALRV 257
           AGKRKISWQDQVALRV
Sbjct: 241 AGKRKISWQDQVALRV 254

[Close]

BLAST of Carg14081-RA vs. NCBI nr
Match: KGN65169.1 (hypothetical protein Csa_1G256780 [Cucumis sativus])

HSP 1 Score: 295.8 bits (756), Expect = 1.4e-76
Identity = 204/260 (78.46%), Postives = 218/260 (83.85%), Query Frame = 0


Query: 1   MKKMKGAASQHPSVFDDSKIRFKHQTLLQDYHELEKETETAKRKLQMMKQKKMTLMAEVR 60
           MKKMKG  SQ+P V++DSK RFKHQ+LLQDYH+LEKET T KRKLQMMKQKKMTLMAEVR
Sbjct: 1   MKKMKGVVSQYP-VYEDSKTRFKHQSLLQDYHDLEKETGTVKRKLQMMKQKKMTLMAEVR 60

Query: 61  FLKKRYEYLMKNQ--LPNDHSNGNPVQQKQLNKQVANNTKKGKNGSRRRPALHPLPTISD 120
           FL+KRYEYLMKNQ    + +SN   VQQKQ   QVANN KKGKNG RRR AL PLPTISD
Sbjct: 61  FLRKRYEYLMKNQPSTKDHYSNVETVQQKQWKNQVANNNKKGKNGGRRRTALKPLPTISD 120

Query: 121 INQKERINRRIDIPPQSSTPIPVLDLNQ--KXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           INQKE    RID+P Q+STPIPVLDLNQ  K           XXXXXXXXXXXXXXXXXX
Sbjct: 121 INQKE----RIDMPLQNSTPIPVLDLNQKAKTSSRKKASQHNXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXSMEEEELQTHYDTLRADELKKSLLRGGNDEQQNDIKISACRTVGD 240
           XXXXXXXXXXXXXX S+EEEELQTHY+ LR DELKKSLLRGGNDEQQNDIKISACR++GD
Sbjct: 181 XXXXXXXXXXXXXXISIEEEELQTHYEPLRVDELKKSLLRGGNDEQQNDIKISACRSIGD 240

Query: 241 GPSRAGKRKISWQDQVALRV 257
           GPSRAGKRKISWQDQVALRV
Sbjct: 241 GPSRAGKRKISWQDQVALRV 255

[Close]

BLAST of Carg14081-RA vs. NCBI nr
Match: XP_008443848.1 (PREDICTED: uncharacterized protein LOC103487344 [Cucumis melo])

HSP 1 Score: 294.7 bits (753), Expect = 3.1e-76
Identity = 204/260 (78.46%), Postives = 219/260 (84.23%), Query Frame = 0


Query: 1   MKKMKGAASQHPSVFDDSKIRFKHQTLLQDYHELEKETETAKRKLQMMKQKKMTLMAEVR 60
           MKKMKG  SQ+P V++DSK RFKHQ+LLQDYH+LEKET T KRKLQMMKQKKMTL+AEVR
Sbjct: 1   MKKMKGVVSQYP-VYEDSKTRFKHQSLLQDYHDLEKETGTVKRKLQMMKQKKMTLIAEVR 60

Query: 61  FLKKRYEYLMKNQ--LPNDHSNGNPVQQKQLNKQVANNTKKGKNGSRRRPALHPLPTISD 120
           FL+KRYEYLMKNQ    + +SNG  VQQKQ   QVANN KK KNG RRR AL PLPTISD
Sbjct: 61  FLRKRYEYLMKNQPSTKDHYSNGETVQQKQSKNQVANNXKKVKNGGRRRTALQPLPTISD 120

Query: 121 INQKERINRRIDIPPQSSTPIPVLDLNQ--KXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           INQKE    RID+P Q+STPIPVLDLNQ  K          XXXXXXXXXXXXXXXXXXX
Sbjct: 121 INQKE----RIDMPMQNSTPIPVLDLNQKAKTSSRKKANQHXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXSMEEEELQTHYDTLRADELKKSLLRGGNDEQQNDIKISACRTVGD 240
           XXXXXXXXXXXXXX S+EEEELQTHY+ LR DELKKSLLRGGNDEQQNDIKISACR++GD
Sbjct: 181 XXXXXXXXXXXXXXISIEEEELQTHYEPLRVDELKKSLLRGGNDEQQNDIKISACRSIGD 240

Query: 241 GPSRAGKRKISWQDQVALRV 257
           GPSRAGKRKISWQDQVALRV
Sbjct: 241 GPSRAGKRKISWQDQVALRV 255

[Close]

BLAST of Carg14081-RA vs. TAIR10
Match: AT5G57910.1 (unknown protein)

HSP 1 Score: 85.9 bits (211), Expect = 4.0e-17
Identity = 75/248 (30.24%), Postives = 118/248 (47.58%), Query Frame = 0


Query: 15  FDDSKIRFKHQTLLQDYHELEKETETAKRKLQMMKQKKMTLMAEVRFLKKRYEYLMKNQL 74
           F+D K+RF+H +L+QDY EL  ETE  +++LQ ++++K TLMAEVRFL++RY +L ++Q 
Sbjct: 16  FEDPKVRFRHHSLMQDYGELHMETEAMRKRLQAVRERKATLMAEVRFLRRRYRHLRQDQ- 75

Query: 75  PNDHSNGNPVQQKQLNKQVANNTKKGK---NGSRRRPALHPLPTISDINQKERINRRIDI 134
                   P + K++ +  +N  KK +   + S +  A     ++ D+N  E+ +     
Sbjct: 76  --------PQEIKKVRR--SNGGKKIRVEVSPSNKSEAETKHVSLPDLNHSEKAHDETKT 135

Query: 135 PPQSSTPIPVLDLNQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 194
            P+    +P+ DLNQ                                             
Sbjct: 136 SPKRR--VPLFDLNQ----------------------------------------ISGEE 195

Query: 195 SMEEEELQTHYDTLRADELK--KSLLRGGNDEQQNDIKISACRTVGDGPSRAGKRKISWQ 254
             E E +  + +  R +E    K L+    + QQ D+K S+CR  G+G   + KRKISWQ
Sbjct: 196 EQETEAVDNNQENTRVEESNSCKRLMISSIEMQQKDVKPSSCRNGGNG---SNKRKISWQ 207

Query: 255 DQV-ALRV 257
           D V ALRV
Sbjct: 256 DPVAALRV 207

[Close]

BLAST of Carg14081-RA vs. TAIR10
Match: AT4G30630.1 (unknown protein)

HSP 1 Score: 55.5 bits (132), Expect = 5.8e-08
Identity = 62/242 (25.62%), Postives = 104/242 (42.98%), Query Frame = 0


Query: 33  ELEKETETAKRKLQMMKQKKMTLMAEVRFLKKRYEYLMKNQ--------LPNDHSNGNPV 92
           ELEKE E  +++L+M+KQK++TL +EVRFL++RYE+L ++Q        L    S G  V
Sbjct: 26  ELEKELEIKRKRLEMIKQKRLTLKSEVRFLRRRYEHLKQDQTLETSPEMLRLSESGGLEV 85

Query: 93  QQKQLNKQVAN----------NTKKGKNGSRRRPALHPLPTISDINQKERINRRIDIPPQ 152
            +K   ++             + K        + AL       D+++K + +R  D+   
Sbjct: 86  PRKPSGERKKQSGVRASVPCFDLKLKNTICNEKEALANNVASCDLDKKRKRSRGSDV--- 145

Query: 153 SSTPIPVLDLNQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSME 212
            + P+ + DLN +                                            S E
Sbjct: 146 LTFPVSLPDLNGE---------------------------GNTSGTDKVPGFDLNQISRE 205

Query: 213 EEELQTHYDTLRADELKKSLLRGGNDEQQNDIKISACRTVGDGPSRAGKRKISWQDQVAL 257
           EEE + + + + A+ +K ++L     +   + K+  C  V    +RA KRK++WQD VAL
Sbjct: 206 EEEPEVNGEHMVAEAMKNAMLDNRISDLHVERKLPICGDVEKELNRAVKRKVTWQDPVAL 237

[Close]

BLAST of Carg14081-RA vs. TrEMBL
Match: tr|A0A0A0LW13|A0A0A0LW13_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256780 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 9.2e-77
Identity = 204/260 (78.46%), Postives = 218/260 (83.85%), Query Frame = 0


Query: 1   MKKMKGAASQHPSVFDDSKIRFKHQTLLQDYHELEKETETAKRKLQMMKQKKMTLMAEVR 60
           MKKMKG  SQ+P V++DSK RFKHQ+LLQDYH+LEKET T KRKLQMMKQKKMTLMAEVR
Sbjct: 1   MKKMKGVVSQYP-VYEDSKTRFKHQSLLQDYHDLEKETGTVKRKLQMMKQKKMTLMAEVR 60

Query: 61  FLKKRYEYLMKNQ--LPNDHSNGNPVQQKQLNKQVANNTKKGKNGSRRRPALHPLPTISD 120
           FL+KRYEYLMKNQ    + +SN   VQQKQ   QVANN KKGKNG RRR AL PLPTISD
Sbjct: 61  FLRKRYEYLMKNQPSTKDHYSNVETVQQKQWKNQVANNNKKGKNGGRRRTALKPLPTISD 120

Query: 121 INQKERINRRIDIPPQSSTPIPVLDLNQ--KXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           INQKE    RID+P Q+STPIPVLDLNQ  K           XXXXXXXXXXXXXXXXXX
Sbjct: 121 INQKE----RIDMPLQNSTPIPVLDLNQKAKTSSRKKASQHNXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXSMEEEELQTHYDTLRADELKKSLLRGGNDEQQNDIKISACRTVGD 240
           XXXXXXXXXXXXXX S+EEEELQTHY+ LR DELKKSLLRGGNDEQQNDIKISACR++GD
Sbjct: 181 XXXXXXXXXXXXXXISIEEEELQTHYEPLRVDELKKSLLRGGNDEQQNDIKISACRSIGD 240

Query: 241 GPSRAGKRKISWQDQVALRV 257
           GPSRAGKRKISWQDQVALRV
Sbjct: 241 GPSRAGKRKISWQDQVALRV 255

[Close]

BLAST of Carg14081-RA vs. TrEMBL
Match: tr|A0A1S3B8I5|A0A1S3B8I5_CUCME (uncharacterized protein LOC103487344 OS=Cucumis melo OX=3656 GN=LOC103487344 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.1e-76
Identity = 204/260 (78.46%), Postives = 219/260 (84.23%), Query Frame = 0


Query: 1   MKKMKGAASQHPSVFDDSKIRFKHQTLLQDYHELEKETETAKRKLQMMKQKKMTLMAEVR 60
           MKKMKG  SQ+P V++DSK RFKHQ+LLQDYH+LEKET T KRKLQMMKQKKMTL+AEVR
Sbjct: 1   MKKMKGVVSQYP-VYEDSKTRFKHQSLLQDYHDLEKETGTVKRKLQMMKQKKMTLIAEVR 60

Query: 61  FLKKRYEYLMKNQ--LPNDHSNGNPVQQKQLNKQVANNTKKGKNGSRRRPALHPLPTISD 120
           FL+KRYEYLMKNQ    + +SNG  VQQKQ   QVANN KK KNG RRR AL PLPTISD
Sbjct: 61  FLRKRYEYLMKNQPSTKDHYSNGETVQQKQSKNQVANNXKKVKNGGRRRTALQPLPTISD 120

Query: 121 INQKERINRRIDIPPQSSTPIPVLDLNQ--KXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           INQKE    RID+P Q+STPIPVLDLNQ  K          XXXXXXXXXXXXXXXXXXX
Sbjct: 121 INQKE----RIDMPMQNSTPIPVLDLNQKAKTSSRKKANQHXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXSMEEEELQTHYDTLRADELKKSLLRGGNDEQQNDIKISACRTVGD 240
           XXXXXXXXXXXXXX S+EEEELQTHY+ LR DELKKSLLRGGNDEQQNDIKISACR++GD
Sbjct: 181 XXXXXXXXXXXXXXISIEEEELQTHYEPLRVDELKKSLLRGGNDEQQNDIKISACRSIGD 240

Query: 241 GPSRAGKRKISWQDQVALRV 257
           GPSRAGKRKISWQDQVALRV
Sbjct: 241 GPSRAGKRKISWQDQVALRV 255

[Close]

BLAST of Carg14081-RA vs. TrEMBL
Match: tr|A0A2N9FY82|A0A2N9FY82_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19616 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 5.1e-35
Identity = 146/256 (57.03%), Postives = 178/256 (69.53%), Query Frame = 0


Query: 4   MKGAASQHPSVF---DDSKIRFKHQTLLQDYHELEKETETAKRKLQMMKQKKMTLMAEVR 63
           MKG  +   S++   +D + RF+HQ+LLQD+ EL+KE+E  K+ LQMMKQKK+TL AEVR
Sbjct: 1   MKGVVAMDASLYAVSEDPRTRFRHQSLLQDFEELQKESEVMKKNLQMMKQKKLTLSAEVR 60

Query: 64  FLKKRYEYLMKNQLPNDHSNGNPVQQKQLNKQVANNTKKGKNGSRRRPALHPLPTISDIN 123
           FL+KRY+YL+ NQ P      + +Q ++ + +    T KGK  S++  AL  L   SD+N
Sbjct: 61  FLRKRYKYLITNQSPKPQPKQDFLQPQKFDTRNTGAT-KGKKYSKKEAALRHLVLASDLN 120

Query: 124 QKERINRRIDIPPQSSTPIPVLDLNQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 183
           +                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 184 XXXXXXXXXXXSMEEEELQTHYDTLRADELKKSLLRGGNDEQQNDIKISACRTVGDGPSR 243
           XXXXXXXXXXXS EEEELQ   + LR+DE KKSLLRGG+DEQ ND+K+S CR +G G +R
Sbjct: 181 XXXXXXXXXXXSTEEEELQADCEPLRSDESKKSLLRGGSDEQHNDMKLSICRNIGSGSNR 240

Query: 244 AGKRKISWQDQVALRV 257
           AGKRKISWQDQVALRV
Sbjct: 241 AGKRKISWQDQVALRV 255

[Close]

BLAST of Carg14081-RA vs. TrEMBL
Match: tr|A0A067KUR5|A0A067KUR5_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04046 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 6.3e-33
Identity = 149/266 (56.02%), Postives = 181/266 (68.05%), Query Frame = 0


Query: 1   MKKMKGAA-------SQHPSVFDDSKIRFKHQTLLQDYHELEKETETAKRKLQMMKQKKM 60
           MK+MKG A       S + ++++D + R +HQ+L+QDY EL KETE  K+KLQ MKQKK+
Sbjct: 1   MKRMKGVAAAMESSPSPYSTMYEDRRTRLRHQSLMQDYMELFKETEDQKKKLQTMKQKKL 60

Query: 61  TLMAEVRFLKKRYEYLMKNQLPNDHSNGNPVQQKQLNKQVANNT---KKGKNGSRRRPAL 120
            LMAEVRFL++RY+YLM+NQ  N       VQ++ L    AN T   +K +N +    A+
Sbjct: 61  NLMAEVRFLRQRYKYLMQNQSQNPAPEPKHVQRQSL----ANGTRAVRKDRNYTGNDAAI 120

Query: 121 HPLPTISDINQKERINRRIDIPPQSSTPIPVLDLNQKXXXXXXXXXXXXXXXXXXXXXXX 180
                  D+N                           XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 QRGGPRFDLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXSMEEEELQTHYDTLRADELKKSLLRGGNDEQQNDIKISA 240
           XXXXXXXXXXXXXXXXXXXXXSMEEEELQ + DT+R +E K  L+RGG+D+Q ND+K+SA
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXSMEEEELQANGDTMRIEEPKICLMRGGSDDQHNDMKLSA 240

Query: 241 CRTVGDGPSRAGKRKISWQDQVALRV 257
           CRTVG+G SRAGKRKISWQDQVALRV
Sbjct: 241 CRTVGNGSSRAGKRKISWQDQVALRV 262

[Close]

BLAST of Carg14081-RA vs. TrEMBL
Match: tr|A0A2C9VPY1|A0A2C9VPY1_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G035500 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.1e-32
Identity = 147/268 (54.85%), Postives = 189/268 (70.52%), Query Frame = 0


Query: 1   MKKMKGAA-------SQHPSVFDDSKIRFKHQTLLQDYHELEKETETAKRKLQMMKQKKM 60
           +K+MKG A       S + +VF+D + R KHQ+LLQDY EL KETE+ KRKL+MMK KK+
Sbjct: 2   LKRMKGVAAAMESSPSPYATVFEDQRARLKHQSLLQDYEELYKETESQKRKLEMMKHKKL 61

Query: 61  TLMAEVRFLKKRYEYLMKNQLPNDHSNGNPVQQKQLNKQVANNT----KKGKNGSRRRPA 120
           TL++EVRFL++RY++LM+NQ      + NP + K + +Q   NT    +K ++ +    A
Sbjct: 62  TLLSEVRFLRQRYKFLMQNQ------SQNPPEPKYIRRQNLVNTSRTVRKERDSTGNDAA 121

Query: 121 LHPLPTISDINQK-ERINRRIDIPPQSSTPIPVLDLNQKXXXXXXXXXXXXXXXXXXXXX 180
           +       D+N+K +++    +   Q+  P         XXXXXXXXXXXXXXXXXXXXX
Sbjct: 122 VQRQAPRFDLNRKGKKVYGEREAVLQTPGPTFXXXXXXXXXXXXXXXXXXXXXXXXXXXX 181

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXSMEEEELQTHYDTLRADELKKSLLRGGNDEQQNDIKI 240
           XXXXXXXXXXXXXXXXXXXXXXX  EEEELQ + + +R DE K SL+RGG+DE   D+K+
Sbjct: 182 XXXXXXXXXXXXXXXXXXXXXXXXREEEELQANGEMMRIDEPKISLMRGGSDEHHTDMKL 241

Query: 241 SACRTVGDGPSRAGKRKISWQDQVALRV 257
           SACR+VG+G SRAGKRKISWQDQVALRV
Sbjct: 242 SACRSVGNGASRAGKRKISWQDQVALRV 263

The following BLAST results are available for this feature:

BLAST of Carg14081-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932147.1	2.1e-104	98.83	uncharacterized protein LOC111438466 [Cucurbita moschata]	[more]
XP_023531576.1	1.3e-101	96.50	uncharacterized protein LOC111793773 [Cucurbita pepo subsp. pepo]	[more]
XP_022965187.1	1.2e-99	96.48	uncharacterized protein LOC111465117 [Cucurbita maxima]	[more]
KGN65169.1	1.4e-76	78.46	hypothetical protein Csa_1G256780 [Cucumis sativus]	[more]
XP_008443848.1	3.1e-76	78.46	PREDICTED: uncharacterized protein LOC103487344 [Cucumis melo]	[more]

BLAST of Carg14081-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57910.1	4.0e-17	30.24	unknown protein	[more]
AT4G30630.1	5.8e-08	25.62	unknown protein	[more]

BLAST of Carg14081-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg14081-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LW13\|A0A0A0LW13_CUCSA	9.2e-77	78.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256780 PE=4 SV=1	[more]
tr\|A0A1S3B8I5\|A0A1S3B8I5_CUCME	2.1e-76	78.46	uncharacterized protein LOC103487344 OS=Cucumis melo OX=3656 GN=LOC103487344 PE=...	[more]
tr\|A0A2N9FY82\|A0A2N9FY82_FAGSY	5.1e-35	57.03	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19616 PE=4 SV=1	[more]
tr\|A0A067KUR5\|A0A067KUR5_JATCU	6.3e-33	56.02	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04046 PE=4 SV=1	[more]
tr\|A0A2C9VPY1\|A0A2C9VPY1_MANES	1.1e-32	54.85	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G035500 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg14081	Carg14081	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg14081-RA	Carg14081-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg14081-RA.three_prime_UTR.1	Carg14081-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg14081-RA.CDS.4	Carg14081-RA.CDS.4	CDS
Carg14081-RA.CDS.3	Carg14081-RA.CDS.3	CDS
Carg14081-RA.CDS.2	Carg14081-RA.CDS.2	CDS
Carg14081-RA.CDS.1	Carg14081-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg14081-RA.five_prime_UTR.1	Carg14081-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg14081-RA.exon.4	Carg14081-RA.exon.4	exon
Carg14081-RA.exon.3	Carg14081-RA.exon.3	exon
Carg14081-RA.exon.2	Carg14081-RA.exon.2	exon
Carg14081-RA.exon.1	Carg14081-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 24..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..113
None	No IPR available	PANTHER	PTHR34807	FAMILY NOT NAMED	coord: 1..256
None	No IPR available	PANTHER	PTHR34807:SF3	SUBFAMILY NOT NAMED	coord: 1..256