Carg13963-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGACCTCCATCCACCACCACCACCCTCCTCCCCACCACCACCACCACCTCTCCAAATCCACCTCCGCCGTCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCGCCACCACTCAAGCCTGCGCCGCCTGCAAGTACCAACGCCGCAAGTGCGTTCCCGACTGCATCCTAGCCCCCTACTTCCCTCACCATCGCCAACGCCAATTCCTCAACGCTCACAAACTCTTTGGCGTTAGCAACATCACCAAAATCATCAAAAACCTCGATCCCTTCCAAAAGGAAGAGGCAATGCGCACCATTATATTCCAATCCGACGTCCGATCCCTCGATCCGGTCGGCGGATGTTACCGCATCATTCGCGACCTTCAGCGCCAGATCCAGTACAGCAAAGCCGAGCTCGAGATCGTGCTTCATCAATTGGCGATCTGTAAGCACCAGGCTGCTGCCTCTGTTTCTGCCGCTGCGATTCTGGACGCGGATCATCCTATGAGTGGAGGATACGCCGGAATCGAGCACCAATTTGTGGAGGAAGGATTCGTAATTGGGGAAAATGAAAATGCGGAGAGTTTAGACGACGAAGCGGCGGAGGTTTGGGGGATTCAGGCTTCCCAAATCTCGCCCTGTTCTTCCTTCAAATCCTCTGTTCATGATTTTGATCATGTCGATATTCATTATCATCATCAACAATTTGTTAGGTTTCATCCGGATCATCATCAGTTTCTTCCTAAGAGGTCAGTTTCTTCTCTTTTTCATTTTTATTCTAATTTATAATTTTAATGTTACAAATTATATATATAAATTGATTGATTCATCATATTTGGCGCCAACCTACGTTCTGGAATTTATTTTTATATTTTATTCCAAATAACTTGCTTCAAGCCTGGCCCATAACCATAGTCCATAAATAACCTAATAAGCTCCAAACGCCCAATTTTGGAAACCTAGAGGTCCAATGCCCGATTTTGCAGACTTTTACAAATAAAATTAACTTAACAAATGGTTCCAAGAAGGAGCAGATTAGAACGATGAATAACTTTTAGGTACAATTTGGAATCTATGTGGCCACTCTTAGATTGCAAAACGACTCACTCCACAATTAACTTGATCATGACTCATCCACTGAATCAAAGTCAATGGACTTTAACCTCAAACCCAAAGAAAGGTTCGAAAGAAAGAATCATAACAAAACACAACGTTTTTTTTTATTCCACGTATAAATTACCCATAGAAGGTTCTAAATACAAATTTAAGAAAAGAAGGATAAATAGTTTTAATTGGTAGTTTGAAAGACAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTCTAATCACCTTCAAACCACATTGGTGTTTACGGTAACTAGATTATTCTATTGATTTAATATGCTATATAAAGATTTTTGGGCCTCACTGAATGGAAGAGTATTCCTTCATTATAAACTCATGATCATTCCCTAAGTTAGCCGAAGTGGTTAGCCAATGTGAGATTTTCATCGTCAACGGTTTGAACTTGTAAATTTGCTAGATTTGAAGATATAATATATAAGTATCTTGAATCTTCTTTACTTTCGATACATCAATTTTGACGAGTGATTGGATTCATATCATAACCCAATGGATCAGGCCTTTTCAGTATTTTTAATATATTAAAATTTTGTAATTATTAATTTTCATAAGCAAAAGAATATAGCTTTAAAAATTTAAATTAAATTGTGCAGTGAGGAAGAAGCAGGCATGGTGGAAATAGATAATGTGATATTGAAAGAAGATTCAGAGCCATTGCAAAATGACCAAGATGGAGAGGTTAAAGGTGCAGTAAATAATTTATTTACCTTCCCAACCACCCTCTGATACTTACCTTCTTCTTTACTTTTTTACTTTTAAAATTTTTTTTTTTTTATTTAGTCCTAA ATGACCTCCATCCACCACCACCACCCTCCTCCCCACCACCACCACCACCTCTCCAAATCCACCTCCGCCGTCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCGCCACCACTCAAGCCTGCGCCGCCTGCAAGTACCAACGCCGCAAGTGCGTTCCCGACTGCATCCTAGCCCCCTACTTCCCTCACCATCGCCAACGCCAATTCCTCAACGCTCACAAACTCTTTGGCGTTAGCAACATCACCAAAATCATCAAAAACCTCGATCCCTTCCAAAAGGAAGAGGCAATGCGCACCATTATATTCCAATCCGACGTCCGATCCCTCGATCCGGTCGGCGGATGTTACCGCATCATTCGCGACCTTCAGCGCCAGATCCAGTACAGCAAAGCCGAGCTCGAGATCGTGCTTCATCAATTGGCGATCTGTAAGCACCAGGCTGCTGCCTCTGTTTCTGCCGCTGCGATTCTGGACGCGGATCATCCTATGAGTGGAGGATACGCCGGAATCGAGCACCAATTTGTGGAGGAAGGATTCGTAATTGGGGAAAATGAAAATGCGGAGAGTTTAGACGACGAAGCGGCGGAGGTTTGGGGGATTCAGGCTTCCCAAATCTCGCCCTGTTCTTCCTTCAAATCCTCTGTTCATGATTTTGATCATGTCGATATTCATTATCATCATCAACAATTTGTTAGGTTTCATCCGGATCATCATCAGTTTCTTCCTAAGAGTGAGGAAGAAGCAGGCATGGTGGAAATAGATAATGTGATATTGAAAGAAGATTCAGAGCCATTGCAAAATGACCAAGATGGAGAGTCCTAA ATGACCTCCATCCACCACCACCACCCTCCTCCCCACCACCACCACCACCTCTCCAAATCCACCTCCGCCGTCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCGCCACCACTCAAGCCTGCGCCGCCTGCAAGTACCAACGCCGCAAGTGCGTTCCCGACTGCATCCTAGCCCCCTACTTCCCTCACCATCGCCAACGCCAATTCCTCAACGCTCACAAACTCTTTGGCGTTAGCAACATCACCAAAATCATCAAAAACCTCGATCCCTTCCAAAAGGAAGAGGCAATGCGCACCATTATATTCCAATCCGACGTCCGATCCCTCGATCCGGTCGGCGGATGTTACCGCATCATTCGCGACCTTCAGCGCCAGATCCAGTACAGCAAAGCCGAGCTCGAGATCGTGCTTCATCAATTGGCGATCTGTAAGCACCAGGCTGCTGCCTCTGTTTCTGCCGCTGCGATTCTGGACGCGGATCATCCTATGAGTGGAGGATACGCCGGAATCGAGCACCAATTTGTGGAGGAAGGATTCGTAATTGGGGAAAATGAAAATGCGGAGAGTTTAGACGACGAAGCGGCGGAGGTTTGGGGGATTCAGGCTTCCCAAATCTCGCCCTGTTCTTCCTTCAAATCCTCTGTTCATGATTTTGATCATGTCGATATTCATTATCATCATCAACAATTTGTTAGGTTTCATCCGGATCATCATCAGTTTCTTCCTAAGAGTGAGGAAGAAGCAGGCATGGTGGAAATAGATAATGTGATATTGAAAGAAGATTCAGAGCCATTGCAAAATGACCAAGATGGAGAGTCCTAA MTSIHHHHPPPHHHHHLSKSTSAVSSSSSSSSSTATTQACAACKYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQSDVRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQLAICKHQAAASVSAAAILDADHPMSGGYAGIEHQFVEEGFVIGENENAESLDDEAAEVWGIQASQISPCSSFKSSVHDFDHVDIHYHHQQFVRFHPDHHQFLPKSEEEAGMVEIDNVILKEDSEPLQNDQDGES
BLAST of Carg13963-RA vs. NCBI nr
Match: XP_022964078.1 (protein IAL1-like, partial [Cucurbita moschata]) HSP 1 Score: 454.1 bits (1167), Expect = 3.3e-124 Identity = 225/228 (98.68%), Postives = 226/228 (99.12%), Query Frame = 0
BLAST of Carg13963-RA vs. NCBI nr
Match: XP_023000636.1 (uncharacterized protein LOC111494882 [Cucurbita maxima]) HSP 1 Score: 429.1 bits (1102), Expect = 1.1e-116 Identity = 212/228 (92.98%), Postives = 223/228 (97.81%), Query Frame = 0
BLAST of Carg13963-RA vs. NCBI nr
Match: XP_023514493.1 (LOB domain-containing protein 28-like, partial [Cucurbita pepo subsp. pepo]) HSP 1 Score: 385.6 bits (989), Expect = 1.4e-103 Identity = 198/230 (86.09%), Postives = 203/230 (88.26%), Query Frame = 0
BLAST of Carg13963-RA vs. NCBI nr
Match: KGN45524.1 (hypothetical protein Csa_7G451300 [Cucumis sativus]) HSP 1 Score: 275.4 bits (703), Expect = 2.1e-70 Identity = 157/244 (64.34%), Postives = 174/244 (71.31%), Query Frame = 0
BLAST of Carg13963-RA vs. NCBI nr
Match: XP_022991793.1 (LOB domain-containing protein 29-like [Cucurbita maxima]) HSP 1 Score: 257.7 bits (657), Expect = 4.5e-65 Identity = 155/251 (61.75%), Postives = 176/251 (70.12%), Query Frame = 0
BLAST of Carg13963-RA vs. TAIR10
Match: AT3G13850.1 (LOB domain-containing protein 22) HSP 1 Score: 154.1 bits (388), Expect = 1.3e-37 Identity = 73/103 (70.87%), Postives = 86/103 (83.50%), Query Frame = 0
BLAST of Carg13963-RA vs. TAIR10
Match: AT1G72980.1 (LOB domain-containing protein 7) HSP 1 Score: 110.9 bits (276), Expect = 1.2e-24 Identity = 50/103 (48.54%), Postives = 74/103 (71.84%), Query Frame = 0
BLAST of Carg13963-RA vs. TAIR10
Match: AT3G47870.1 (LOB domain-containing protein 27) HSP 1 Score: 103.6 bits (257), Expect = 2.0e-22 Identity = 50/98 (51.02%), Postives = 66/98 (67.35%), Query Frame = 0
BLAST of Carg13963-RA vs. TAIR10
Match: AT1G65620.1 (Lateral organ boundaries (LOB) domain family protein) HSP 1 Score: 97.4 bits (241), Expect = 1.4e-20 Identity = 43/109 (39.45%), Postives = 73/109 (66.97%), Query Frame = 0
BLAST of Carg13963-RA vs. TAIR10
Match: AT5G63090.2 (Lateral organ boundaries (LOB) domain family protein) HSP 1 Score: 95.9 bits (237), Expect = 4.1e-20 Identity = 46/111 (41.44%), Postives = 68/111 (61.26%), Query Frame = 0
BLAST of Carg13963-RA vs. Swiss-Prot
Match: sp|Q9LRW1|LBD22_ARATH (LOB domain-containing protein 22 OS=Arabidopsis thaliana OX=3702 GN=LBD22 PE=2 SV=1) HSP 1 Score: 154.1 bits (388), Expect = 2.3e-36 Identity = 73/103 (70.87%), Postives = 86/103 (83.50%), Query Frame = 0
BLAST of Carg13963-RA vs. Swiss-Prot
Match: sp|Q9SSM9|LBD7_ARATH (LOB domain-containing protein 7 OS=Arabidopsis thaliana OX=3702 GN=LBD7 PE=2 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 2.2e-23 Identity = 50/103 (48.54%), Postives = 74/103 (71.84%), Query Frame = 0
BLAST of Carg13963-RA vs. Swiss-Prot
Match: sp|Q9STS6|LBD27_ARATH (LOB domain-containing protein 27 OS=Arabidopsis thaliana OX=3702 GN=LBD27 PE=1 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 3.5e-21 Identity = 50/98 (51.02%), Postives = 66/98 (67.35%), Query Frame = 0
BLAST of Carg13963-RA vs. Swiss-Prot
Match: sp|Q32SG3|LBD6_MAIZE (LOB domain-containing protein 6 OS=Zea mays OX=4577 GN=LBD6 PE=1 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 6.0e-21 Identity = 45/108 (41.67%), Postives = 75/108 (69.44%), Query Frame = 0
BLAST of Carg13963-RA vs. Swiss-Prot
Match: sp|A1YKY7|IAL1_MAIZE (Protein IAL1 OS=Zea mays OX=4577 PE=2 SV=1) HSP 1 Score: 100.1 bits (248), Expect = 3.9e-20 Identity = 50/139 (35.97%), Postives = 81/139 (58.27%), Query Frame = 0
BLAST of Carg13963-RA vs. TrEMBL
Match: tr|A0A0A0K9M3|A0A0A0K9M3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G451300 PE=4 SV=1) HSP 1 Score: 275.4 bits (703), Expect = 1.4e-70 Identity = 157/244 (64.34%), Postives = 174/244 (71.31%), Query Frame = 0
BLAST of Carg13963-RA vs. TrEMBL
Match: tr|A0A1S4E3M5|A0A1S4E3M5_CUCME (LOB domain-containing protein 22 OS=Cucumis melo OX=3656 GN=LOC103500724 PE=4 SV=1) HSP 1 Score: 245.7 bits (626), Expect = 1.2e-61 Identity = 129/173 (74.57%), Postives = 138/173 (79.77%), Query Frame = 0
BLAST of Carg13963-RA vs. TrEMBL
Match: tr|A0A2P5QCU5|A0A2P5QCU5_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA33538 PE=4 SV=1) HSP 1 Score: 190.7 bits (483), Expect = 4.4e-45 Identity = 102/190 (53.68%), Postives = 128/190 (67.37%), Query Frame = 0
BLAST of Carg13963-RA vs. TrEMBL
Match: tr|A0A0D2VJ03|A0A0D2VJ03_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G064500 PE=4 SV=1) HSP 1 Score: 190.7 bits (483), Expect = 4.4e-45 Identity = 102/190 (53.68%), Postives = 128/190 (67.37%), Query Frame = 0
BLAST of Carg13963-RA vs. TrEMBL
Match: tr|A0A1U8KIZ9|A0A1U8KIZ9_GOSHI (LOB domain-containing protein 22-like OS=Gossypium hirsutum OX=3635 GN=LOC107916012 PE=4 SV=1) HSP 1 Score: 190.3 bits (482), Expect = 5.8e-45 Identity = 102/190 (53.68%), Postives = 128/190 (67.37%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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