Carg13896-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13896-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	K+-H+ exchange-like protein
Location	Cucurbita_argyrosperma_scaffold_042 : 622994 .. 625966 (-)
Sequence length	1566

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGCAATTCTCGCAACCGCACGTTCAACTTTCATTTCGTTCAGTTCTCTCGATAGTTTCCTCATTCGGATCAGAGTAATCAGGTTTCTTTCGGATTTACTCAGGGATTAGGGTTTATGTGAGAGAGGGAATTCGTGTGCGAACCAAGCATTTTCTCCATTGGAATTTTGTGACGATGAGAGCCAGATTGGTGGTGTTTCCAATCAGAGGAAGAAATTGGTGTTTCAGCAGATCCGTCGACCCTGCCGCCTCGGATTCTGCTTCTACTCAGACTCCTTCCACTTTGAAAGATCTCTGGACCAAAATATCCTCGCCTTCTTCCTCCAAATCCGACGCTCTCTCCAGCAGTACCAGTAGTAGCAATGCGGAAATCGTTACCGATTTTATCTCTTTCAAGGTCCTTCATGCTCTTTTCAGTTTCGTCTTGTTTTGTTTTTTTTTTCTTCTGGTATTTGTTTTGATCCTGTCGAACATGGCGTTGACAATGACGTTCCGTTTATCAGATGAATAAAGCTTGGACTGCTCTGGAGAAGGCTCCTGATGGCTCGTTTAAGAATAAACTTCACGGGTGAAGTCTCGCCAATGCGATTTTATTCGTTTATGGCACATTTCTAGTGAAATTAACTAATATGCTCTTGATTTTCTTCCTGTAGGATCGGATTGAAGCTCTTATCTCGAGTTAAGCCGTCTGAGATATTCTTGAAGTCAATAACTAAAGATGTTACGAGCGTTGAAATAGCATATCCATCCAGGTTTCATCTCTTTCGCTTTGTTATTTTTAAAATCGTCGATATAACAATTTCGCGCTTCCGCCTGCTTCTTCTTCTTTGGCTACTTGAATCCAAACCTAGTAGGGTTTTTTTTTCCCCTTACCATATTACAATTTGTTATGCTATTTCACTGATTTCTTGCGACATTACAGTTTGAATCCACGGCTCGTTCGTAGGAGGTTAAGGCATATTGCCCTCAGGTGCATTTTCCCTTTTCCATCTGGCGAATTGAAGCTAACTAGCGATTCTCTCATTTTATTCTTTTTTCTTTGAAGCAATGTTCAACATTACACTTAGAATCCATGATTATTGTTCTTTCAAGTCGTGAATCACAGTCCTAATAGGACCTTATCAGCTCAGCGTCCAATACTACTACTCTGTGGTTCCATGATAGAAAGCTTATATCATCTCAAGTCCTTTTTGTTTCCAGGAAGCTTTTCTTGTTGCAAAAGTTTGAACTATGCCCCTTATTGATGTGAACTTTCTGTATCTCATGACCAGGGGAACTGCCATCCACAAGAAGCACTTCTATGGTTCAGTTTCGTTGCTTCCATTAGCAAGTGCATTTACTGTATGTTTGTGTCTATTTTTGAATATCAGCCATACTTTTTTCTTGCATTGTTTGTACCATGTTGATGTTATGCTTTTGACACAACATGTACTGCAACATTTCAAGTTCCTTTTTACTTAATAAGTACATTTATATGTCTTCTCTTGACTTCTATCCTGGTTTGTCTTACGTAGATTTTGCCTCTGCCAAATATTCCATTCTTTTGGGTTTTGTTTCGCACATATTCTCATTGGCGAGCCCTAAAGGTACTTCTATACTGGATTTTGTCAGTGGCTTTTGGACATCGTTTTTTTAGTAGTTGTTACTTGACCCTGGGGTTTTATAATTAGTTGTATAAGAGTTTTACATGTATCTAATGTTTCTGCACCTTTTTTTTCCTTCTTCTAAATGTATGCAAATATACACGCTTTTAGGGAAGTGAAATACTTCTTCAGTTGGTCTCTGATAGATCTTATTCGTGCAACTCATCCACTGATGGTAACATAACTGTGAACACAGTCCAACGACATCCAGGTTCAACCTTGGTAAGTATGAAGTATTTTTATGTTTTCAGGTACTAGTAGATCTACACCTATATTCTTGATTGGAATTGGAAAAAGATATTTTTGGTAACCCGATAATTTTCCATATAACATATCTTTTTACCGATCAGTGGTGTGCCTGTTGCATAGATAGGGCTTCGGTAATGAAATGGTAATTCATTTTGCATCTTGGTCATCCCGAGCTGTAACTTTATGAAGGAAAAGATTGACTATTACTCTGAGTGGAGTTAGATACTCTTTCCCTCATTTGCGTGTCACCCCATGTTTAAATATTGGTCGATGTCTATTTTTCTTTTCAGTTCAATCCTTGTATTTCTGCTTTTAATAGACTATGCATAGCATAAAACTGCGGTCGCTCTTACTTGGATTATGTTAATGGTGTCTAGGATCTGCAGCCATCAAAGGAACTCGACAAATTTCTGAGCCAGATGGAGGGATCTGATGATATAACTACTACAATTAAAGATATCTGCAAGATCTTTGATTTAAACATGAATAATGTTTTGAAGTACAAGGATAAAATGTGATGAGCGAGACCCCATCCATTTTCAGATGGGGGAAAAGAAGGTGCAACATTAAAACAAAGGAGATGGTCTTTGATTGATATTCATGGGATGAGAGATTGATTTATGGAAGAAAATCACGAAAGATGAAATAAGCTTGAGCCAACATATGCTTGGACTAGTGGTGGTATGTTATGCGTCTTAGAATTTACATTGTTCTTCCATTATAAAAGGAGGGGAGGGAGGAAGTGCACAGCCTGATTCCCAGTTTGGTGGCCTTTAATGTGTTGGGGCTAGTGTCATCTTATCCATCCCCAAGAACAAAGAATCGGATCCGTCTTAGTAAGAAATTCGAACAAACAAACGAACGAACGAACAACACAAGTTCGTGTTCTCTTCTTTATGCAAATCAAATGTGGTTGGCACCAGATCCCACACTGGTTAGTAGCTTTTTTCTTTTTTGGTTAATCTTAGCTCTCATCTTTGCGCCATATCTTATTATTGTTCATCTGTTTTGAAATGTTAAACAGACTATTTTGATCTAACATTTATATTTTAGGGAAAACAAATGTTGAGGTTACTATGAA

mRNA sequence

TTTGCAATTCTCGCAACCGCACGTTCAACTTTCATTTCGTTCAGTTCTCTCGATAGTTTCCTCATTCGGATCAGAGTAATCAGGTTTCTTTCGGATTTACTCAGGGATTAGGGTTTATGTGAGAGAGGGAATTCGTGTGCGAACCAAGCATTTTCTCCATTGGAATTTTGTGACGATGAGAGCCAGATTGGTGGTGTTTCCAATCAGAGGAAGAAATTGGTGTTTCAGCAGATCCGTCGACCCTGCCGCCTCGGATTCTGCTTCTACTCAGACTCCTTCCACTTTGAAAGATCTCTGGACCAAAATATCCTCGCCTTCTTCCTCCAAATCCGACGCTCTCTCCAGCAGTACCAGTAGTAGCAATGCGGAAATCGTTACCGATTTTATCTCTTTCAAGATGAATAAAGCTTGGACTGCTCTGGAGAAGGCTCCTGATGGCTCGTTTAAGAATAAACTTCACGGGATCGGATTGAAGCTCTTATCTCGAGTTAAGCCGTCTGAGATATTCTTGAAGTCAATAACTAAAGATGTTACGAGCGTTGAAATAGCATATCCATCCAGTTTGAATCCACGGCTCGTTCGTAGGAGGTTAAGGCATATTGCCCTCAGGGGAACTGCCATCCACAAGAAGCACTTCTATGGTTCAGTTTCGTTGCTTCCATTAGCAAGTGCATTTACTATTTTGCCTCTGCCAAATATTCCATTCTTTTGGGTTTTGTTTCGCACATATTCTCATTGGCGAGCCCTAAAGGGAAGTGAAATACTTCTTCAGTTGGTCTCTGATAGATCTTATTCGTGCAACTCATCCACTGATGGTAACATAACTGTGAACACAGTCCAACGACATCCAGGTTCAACCTTGGATCTGCAGCCATCAAAGGAACTCGACAAATTTCTGAGCCAGATGGAGGGATCTGATGATATAACTACTACAATTAAAGATATCTGCAAGATCTTTGATTTAAACATGAATAATGTTTTGAAGTACAAGGATAAAATGTGATGAGCGAGACCCCATCCATTTTCAGATGGGGGAAAAGAAGGTGCAACATTAAAACAAAGGAGATGGTCTTTGATTGATATTCATGGGATGAGAGATTGATTTATGGAAGAAAATCACGAAAGATGAAATAAGCTTGAGCCAACATATGCTTGGACTAGTGGTGGTATGTTATGCGTCTTAGAATTTACATTGTTCTTCCATTATAAAAGGAGGGGAGGGAGGAAGTGCACAGCCTGATTCCCAGTTTGGTGGCCTTTAATGTGTTGGGGCTAGTGTCATCTTATCCATCCCCAAGAACAAAGAATCGGATCCGTCTTAGTAAGAAATTCGAACAAACAAACGAACGAACGAACAACACAAGTTCGTGTTCTCTTCTTTATGCAAATCAAATGTGGTTGGCACCAGATCCCACACTGGTTAGTAGCTTTTTTCTTTTTTGGTTAATCTTAGCTCTCATCTTTGCGCCATATCTTATTATTGTTCATCTGTTTTGAAATGTTAAACAGACTATTTTGATCTAACATTTATATTTTAGGGAAAACAAATGTTGAGGTTACTATGAA

Coding sequence (CDS)

ATGAGAGCCAGATTGGTGGTGTTTCCAATCAGAGGAAGAAATTGGTGTTTCAGCAGATCCGTCGACCCTGCCGCCTCGGATTCTGCTTCTACTCAGACTCCTTCCACTTTGAAAGATCTCTGGACCAAAATATCCTCGCCTTCTTCCTCCAAATCCGACGCTCTCTCCAGCAGTACCAGTAGTAGCAATGCGGAAATCGTTACCGATTTTATCTCTTTCAAGATGAATAAAGCTTGGACTGCTCTGGAGAAGGCTCCTGATGGCTCGTTTAAGAATAAACTTCACGGGATCGGATTGAAGCTCTTATCTCGAGTTAAGCCGTCTGAGATATTCTTGAAGTCAATAACTAAAGATGTTACGAGCGTTGAAATAGCATATCCATCCAGTTTGAATCCACGGCTCGTTCGTAGGAGGTTAAGGCATATTGCCCTCAGGGGAACTGCCATCCACAAGAAGCACTTCTATGGTTCAGTTTCGTTGCTTCCATTAGCAAGTGCATTTACTATTTTGCCTCTGCCAAATATTCCATTCTTTTGGGTTTTGTTTCGCACATATTCTCATTGGCGAGCCCTAAAGGGAAGTGAAATACTTCTTCAGTTGGTCTCTGATAGATCTTATTCGTGCAACTCATCCACTGATGGTAACATAACTGTGAACACAGTCCAACGACATCCAGGTTCAACCTTGGATCTGCAGCCATCAAAGGAACTCGACAAATTTCTGAGCCAGATGGAGGGATCTGATGATATAACTACTACAATTAAAGATATCTGCAAGATCTTTGATTTAAACATGAATAATGTTTTGAAGTACAAGGATAAAATGTGA

Protein sequence

MRARLVVFPIRGRNWCFSRSVDPAASDSASTQTPSTLKDLWTKISSPSSSKSDALSSSTSSSNAEIVTDFISFKMNKAWTALEKAPDGSFKNKLHGIGLKLLSRVKPSEIFLKSITKDVTSVEIAYPSSLNPRLVRRRLRHIALRGTAIHKKHFYGSVSLLPLASAFTILPLPNIPFFWVLFRTYSHWRALKGSEILLQLVSDRSYSCNSSTDGNITVNTVQRHPGSTLDLQPSKELDKFLSQMEGSDDITTTIKDICKIFDLNMNNVLKYKDKM

Homology

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BLAST of Carg13896-RA vs. NCBI nr
Match: XP_022964630.1 (uncharacterized protein LOC111464584 [Cucurbita moschata])

HSP 1 Score: 521.2 bits (1341), Expect = 2.2e-144
Identity = 273/275 (99.27%), Postives = 274/275 (99.64%), Query Frame = 0


Query: 1   MRARLVVFPIRGRNWCFSRSVDPAASDSASTQTPSTLKDLWTKISSPSSSKSDAXXXXXX 60
           MRARLVVFPIRGRNWCFSRSVDPAASDSASTQTPSTLKDLWTKISSPSSSKSDAXXXXXX
Sbjct: 1   MRARLVVFPIRGRNWCFSRSVDPAASDSASTQTPSTLKDLWTKISSPSSSKSDAXXXXXX 60

Query: 61  XXNAEIVTDFISFKMNKAWTALEKAPDGSFKNKLHGIGLKLLSRVKPSEIFLKSITKDVT 120
           XXNAEIVTDFISFKMNKAWTALEKAPDGSFKNKLHGIGLKLLSRVKPSEIFLKSITKDVT
Sbjct: 61  XXNAEIVTDFISFKMNKAWTALEKAPDGSFKNKLHGIGLKLLSRVKPSEIFLKSITKDVT 120

Query: 121 SVEIAYPSSLNPRLVRRRLRHIALRGTAIHKKHFYGSVSLLPLASAFTILPLPNIPFFWV 180
           SVEIAYPSSLNPRLVRRRLRHIALRGTAIHKKHFYGSVSLLPLASAFTILPLPNIPFFWV
Sbjct: 121 SVEIAYPSSLNPRLVRRRLRHIALRGTAIHKKHFYGSVSLLPLASAFTILPLPNIPFFWV 180

Query: 181 LFRTYSHWRALKGSEILLQLVSDRSYSCNSSTDGNITVNTVQRHPGSTLDLQPSKELDKF 240
           LFRTYSHWRALKGSEILLQLVSDRSYSCNSSTDGN TVNTVQ+HPGSTLDLQPSKELDKF
Sbjct: 181 LFRTYSHWRALKGSEILLQLVSDRSYSCNSSTDGNKTVNTVQQHPGSTLDLQPSKELDKF 240

Query: 241 LSQMEGSDDITTTIKDICKIFDLNMNNVLKYKDKM 276
           LSQMEGSDDITTTIKDICKIFDLNMNNVLKYKDKM
Sbjct: 241 LSQMEGSDDITTTIKDICKIFDLNMNNVLKYKDKM 275

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BLAST of Carg13896-RA vs. NCBI nr
Match: XP_023000133.1 (uncharacterized protein LOC111494421 [Cucurbita maxima] >XP_023513567.1 uncharacterized protein LOC111778134 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 518.5 bits (1334), Expect = 1.4e-143
Identity = 272/275 (98.91%), Postives = 273/275 (99.27%), Query Frame = 0


Query: 1   MRARLVVFPIRGRNWCFSRSVDPAASDSASTQTPSTLKDLWTKISSPSSSKSDAXXXXXX 60
           MRARLVVFPIRGRNWCFSRSVDPAASDSASTQTPSTLKDLWTKISSPSSSKSDAXXXXXX
Sbjct: 1   MRARLVVFPIRGRNWCFSRSVDPAASDSASTQTPSTLKDLWTKISSPSSSKSDAXXXXXX 60

Query: 61  XXNAEIVTDFISFKMNKAWTALEKAPDGSFKNKLHGIGLKLLSRVKPSEIFLKSITKDVT 120
           XXNAEIVTDFISFKMNKAWTALEKAPDGSFKNKLHGIGLKLLSRVKPSEIFLKSITKDVT
Sbjct: 61  XXNAEIVTDFISFKMNKAWTALEKAPDGSFKNKLHGIGLKLLSRVKPSEIFLKSITKDVT 120

Query: 121 SVEIAYPSSLNPRLVRRRLRHIALRGTAIHKKHFYGSVSLLPLASAFTILPLPNIPFFWV 180
           SVEIAYPSSLNPRLVRRRLRHIALRGTAIHKKHFYGSVSLLPLASAFTILPLPNIPFFWV
Sbjct: 121 SVEIAYPSSLNPRLVRRRLRHIALRGTAIHKKHFYGSVSLLPLASAFTILPLPNIPFFWV 180

Query: 181 LFRTYSHWRALKGSEILLQLVSDRSYSCNSSTDGNITVNTVQRHPGSTLDLQPSKELDKF 240
           LFRTYSHWRALKGSEILLQLVSDRSYSCNSSTDGN TVNTVQ+HPGSTLDLQPSKELDKF
Sbjct: 181 LFRTYSHWRALKGSEILLQLVSDRSYSCNSSTDGNKTVNTVQQHPGSTLDLQPSKELDKF 240

Query: 241 LSQMEGSDDITTTIKDICKIFDLNMNNVLKYKDKM 276
           LSQMEGS DITTTIKDICKIFDLNMNNVLKYKDKM
Sbjct: 241 LSQMEGSGDITTTIKDICKIFDLNMNNVLKYKDKM 275

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BLAST of Carg13896-RA vs. NCBI nr
Match: XP_022147084.1 (uncharacterized protein LOC111016104 isoform X1 [Momordica charantia])

HSP 1 Score: 448.0 bits (1151), Expect = 2.4e-122
Identity = 236/275 (85.82%), Postives = 248/275 (90.18%), Query Frame = 0


Query: 1   MRARLVVFPIRGRNWCFSRSVDPAASDSASTQTPSTLKDLWTKISSPSSSKSDAXXXXXX 60
           MRARLVVFPIRGRNWCF RS+DPAASDSAS+QTPSTLKDLW +IS         XXXXXX
Sbjct: 1   MRARLVVFPIRGRNWCFGRSIDPAASDSASSQTPSTLKDLWIRISXXXXXXXXXXXXXXX 60

Query: 61  XXNAEIVTDFISFKMNKAWTALEKAPDGSFKNKLHGIGLKLLSRVKPSEIFLKSITKDVT 120
           XX AEIVTDFISFKMNKAWTALE AP+GSFKNKLHGIGLKLLSRVKP EIFLKSITKDVT
Sbjct: 61  XXXAEIVTDFISFKMNKAWTALENAPNGSFKNKLHGIGLKLLSRVKPDEIFLKSITKDVT 120

Query: 121 SVEIAYPSSLNPRLVRRRLRHIALRGTAIHKKHFYGSVSLLPLASAFTILPLPNIPFFWV 180
           +VEI YPSSLNPRLVRRRLRHIALRGTAIHKK+FYGSVSLLP+ SAFT+LPLPNIPFFWV
Sbjct: 121 NVEITYPSSLNPRLVRRRLRHIALRGTAIHKKYFYGSVSLLPVTSAFTVLPLPNIPFFWV 180

Query: 181 LFRTYSHWRALKGSEILLQLVSDRSYSCNSSTDGNITVNTVQRHPGSTLDLQPSKELDKF 240
           LFRTYSHWRALKGSE LLQLVSDRSYS NSSTDGN TV+ V++HPGSTLDLQPSKELDK 
Sbjct: 181 LFRTYSHWRALKGSEKLLQLVSDRSYSFNSSTDGNKTVHKVRQHPGSTLDLQPSKELDKI 240

Query: 241 LSQMEGSDDITTTIKDICKIFDLNMNNVLKYKDKM 276
           LSQMEG    TT IKDICKIFDLN NNVLKYKD+M
Sbjct: 241 LSQMEGRGGDTTAIKDICKIFDLNANNVLKYKDRM 275

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BLAST of Carg13896-RA vs. NCBI nr
Match: XP_008462234.1 (PREDICTED: uncharacterized protein LOC103500639 [Cucumis melo])

HSP 1 Score: 438.0 bits (1125), Expect = 2.4e-119
Identity = 227/276 (82.25%), Postives = 240/276 (86.96%), Query Frame = 0


Query: 1   MRARLVVFPIRGRNWCFSRSVDPAASDSASTQTPSTLKDLWTKI-SSPSSSKSDAXXXXX 60
           MRARLVVFPIRGRNWCFSRS+DP  SDSAS QTPST KDLWTKI SS SSSKS A     
Sbjct: 1   MRARLVVFPIRGRNWCFSRSIDPTVSDSASAQTPSTFKDLWTKISSSSSSSKSGALSIAN 60

Query: 61  XXXNAEIVTDFISFKMNKAWTALEKAPDGSFKNKLHGIGLKLLSRVKPSEIFLKSITKDV 120
              NAEIVTDFISFKMNKAWTALEKAPDGSFKNKLHGIGLKLLSRVKPSEIFLKSITKDV
Sbjct: 61  ASNNAEIVTDFISFKMNKAWTALEKAPDGSFKNKLHGIGLKLLSRVKPSEIFLKSITKDV 120

Query: 121 TSVEIAYPSSLNPRLVRRRLRHIALRGTAIHKKHFYGSVSLLPLASAFTILPLPNIPFFW 180
           TSVEI YPSSLNPRLVRRRLRHIA RGT IH+K+FYGSVSL PLASAFTILPLPNIPFFW
Sbjct: 121 TSVEITYPSSLNPRLVRRRLRHIAFRGTVIHRKYFYGSVSLFPLASAFTILPLPNIPFFW 180

Query: 181 VLFRTYSHWRALKGSEILLQLVSDRSYSCNSSTDGNITVNTVQRHPGSTLDLQPSKELDK 240
           VLFRTYSHWRAL+GSE LLQLVSDRSY  NSS+DG    + VQ++ G  LD+QPSKELDK
Sbjct: 181 VLFRTYSHWRALQGSEKLLQLVSDRSYPGNSSSDGKKNEDKVQQYSGPALDMQPSKELDK 240

Query: 241 FLSQMEGSDDITTTIKDICKIFDLNMNNVLKYKDKM 276
           FLSQME S DI T I+DICK+FDLN+ NVLKYKD +
Sbjct: 241 FLSQMEASGDI-TAIRDICKMFDLNIGNVLKYKDAL 275

[Close]

BLAST of Carg13896-RA vs. NCBI nr
Match: XP_022147092.1 (uncharacterized protein LOC111016104 isoform X2 [Momordica charantia])

HSP 1 Score: 437.2 bits (1123), Expect = 4.2e-119
Identity = 233/275 (84.73%), Postives = 245/275 (89.09%), Query Frame = 0


Query: 1   MRARLVVFPIRGRNWCFSRSVDPAASDSASTQTPSTLKDLWTKISSPSSSKSDAXXXXXX 60
           MRARLVVFPIRGRNWCF RS+DPAASDSAS+QTPSTLKDLW +IS         XXXXXX
Sbjct: 1   MRARLVVFPIRGRNWCFGRSIDPAASDSASSQTPSTLKDLWIRISXXXXXXXXXXXXXXX 60

Query: 61  XXNAEIVTDFISFKMNKAWTALEKAPDGSFKNKLHGIGLKLLSRVKPSEIFLKSITKDVT 120
           XX AEIVTDFISFKMNKAWTALE AP+GSFKNKLHGIGLKLLSRVKP EIFLKSITKDVT
Sbjct: 61  XXXAEIVTDFISFKMNKAWTALENAPNGSFKNKLHGIGLKLLSRVKPDEIFLKSITKDVT 120

Query: 121 SVEIAYPSSLNPRLVRRRLRHIALRGTAIHKKHFYGSVSLLPLASAFTILPLPNIPFFWV 180
           +VEI YPSSLNPRLVRRRLRHIALRGTAIHKK+FYGSVSLLP+ SAFT+LPLPNIPFFWV
Sbjct: 121 NVEITYPSSLNPRLVRRRLRHIALRGTAIHKKYFYGSVSLLPVTSAFTVLPLPNIPFFWV 180

Query: 181 LFRTYSHWRALKGSEILLQLVSDRSYSCNSSTDGNITVNTVQRHPGSTLDLQPSKELDKF 240
           LFRTYSHWRALKGSE LLQLVSDRSYS NSSTDGN TV+ V++HPGSTL   PSKELDK 
Sbjct: 181 LFRTYSHWRALKGSEKLLQLVSDRSYSFNSSTDGNKTVHKVRQHPGSTL---PSKELDKI 240

Query: 241 LSQMEGSDDITTTIKDICKIFDLNMNNVLKYKDKM 276
           LSQMEG    TT IKDICKIFDLN NNVLKYKD+M
Sbjct: 241 LSQMEGRGGDTTAIKDICKIFDLNANNVLKYKDRM 272

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BLAST of Carg13896-RA vs. TAIR10
Match: AT1G53760.1 (unknown protein)

HSP 1 Score: 297.7 bits (761), Expect = 7.2e-81
Identity = 163/281 (58.01%), Postives = 194/281 (69.04%), Query Frame = 0


Query: 1   MRARLVVFPIRGRNWCFSRSVDPAASDSASTQTPSTLKDLWTKISSPSSSKSDAXXXXXX 60
           MRARLVVFPI+G+ WCFSRSVDP A+ S S  TP+T++ LW KISS S            
Sbjct: 1   MRARLVVFPIKGKKWCFSRSVDPFAAQSPSGVTPTTVRGLWKKISSESK---------PI 60

Query: 61  XXNAEIVTDFISFKMNKAWTALEKAPDGSFKNKLHGIGLKLLSRVKPSEIFLKSITKDVT 120
             NAE++ DFIS KMNKAW  LEKAPDGS KNK+HG GLKLL+RVKPSEIFLKSI+K+VT
Sbjct: 61  NANAELLVDFISDKMNKAWVGLEKAPDGSIKNKIHGFGLKLLARVKPSEIFLKSISKEVT 120

Query: 121 SVEIAYPSSLNPRLVRRRLRHIALRGTAIHKKHFYGSVSLLPLASAFTILPLPNIPFFWV 180
           SV++ YP SL+PRLVRRRLRHIA+ GT +HKK+  GSV+LLPL SAF +LPLPNIPFFWV
Sbjct: 121 SVQVTYPPSLDPRLVRRRLRHIAMSGTILHKKYLVGSVTLLPLTSAFMVLPLPNIPFFWV 180

Query: 181 LFRTYSHWRALKGSEILLQLVSDRSYSCNSSTDGNITVNTV------QRHPGSTLDLQPS 240
           LFRTYSHWRAL+GSE LL                             Q+    T  L PS
Sbjct: 181 LFRTYSHWRALQGSEKLLXXXXXXXXXXXXXXXXXXXXXXXXXXXPEQKSQSPTCILLPS 240

Query: 241 KELDKFLSQM--EGSDDITTTIKDICKIFDLNMNNVLKYKD 274
           +EL + + +   EG D+   TI +ICK FDLN N+VLKY++
Sbjct: 241 EELYQLIREASEEGLDE--ATIIEICKSFDLNKNDVLKYRN 270

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BLAST of Carg13896-RA vs. Swiss-Prot
Match: sp|O13942|YEPC_SCHPO (Uncharacterized protein C23H3.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC23H3.12c PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.6e-05
Identity = 50/180 (27.78%), Postives = 85/180 (47.22%), Query Frame = 0


Query: 67  VTDFISFKMNKAWTALEKAPDGSFKNKLHGIGLKLLSRVKPSEIFLKSI--TKDVTSVE- 126
           + D I  ++ K W +   A     K K+  +G ++L      E FL++I   K +   E 
Sbjct: 29  IHDKIINRIYKYWDSW-SASKSYTKQKVVSLGNRILHATPYEENFLRAIAPVKKLNDTEL 88

Query: 127 -----IAYPSSLNPRLVRRRL-RHIALRGTAIHKKHFYGSVSLLPLASAFTILPL-PNIP 186
                I +P +L    +   L R   L+ T  H  +  G++  LPL   F ++PL PNIP
Sbjct: 89  HQTLYIEHPPNLESSTILAELNRSKQLQKT--HTNYLIGNIIGLPLTIPFILIPLIPNIP 148

Query: 187 FFWVLFRTYSHWRALKGSEILLQLVSDRSYSCNSS----------TDGNIT-VNTVQRHP 226
            F++ +R Y ++RA++GS  L +++S  +     S          T+G+ T +N +  HP
Sbjct: 149 GFYLCYRAYCNFRAIQGSIQLARVMSIENIQMQESEKLEKALKLFTNGDATPLNALIGHP 205

[Close]

BLAST of Carg13896-RA vs. TrEMBL
Match: tr|A0A1S3CGF0|A0A1S3CGF0_CUCME (uncharacterized protein LOC103500639 OS=Cucumis melo OX=3656 GN=LOC103500639 PE=4 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 1.6e-119
Identity = 227/276 (82.25%), Postives = 240/276 (86.96%), Query Frame = 0


Query: 1   MRARLVVFPIRGRNWCFSRSVDPAASDSASTQTPSTLKDLWTKI-SSPSSSKSDAXXXXX 60
           MRARLVVFPIRGRNWCFSRS+DP  SDSAS QTPST KDLWTKI SS SSSKS A     
Sbjct: 1   MRARLVVFPIRGRNWCFSRSIDPTVSDSASAQTPSTFKDLWTKISSSSSSSKSGALSIAN 60

Query: 61  XXXNAEIVTDFISFKMNKAWTALEKAPDGSFKNKLHGIGLKLLSRVKPSEIFLKSITKDV 120
              NAEIVTDFISFKMNKAWTALEKAPDGSFKNKLHGIGLKLLSRVKPSEIFLKSITKDV
Sbjct: 61  ASNNAEIVTDFISFKMNKAWTALEKAPDGSFKNKLHGIGLKLLSRVKPSEIFLKSITKDV 120

Query: 121 TSVEIAYPSSLNPRLVRRRLRHIALRGTAIHKKHFYGSVSLLPLASAFTILPLPNIPFFW 180
           TSVEI YPSSLNPRLVRRRLRHIA RGT IH+K+FYGSVSL PLASAFTILPLPNIPFFW
Sbjct: 121 TSVEITYPSSLNPRLVRRRLRHIAFRGTVIHRKYFYGSVSLFPLASAFTILPLPNIPFFW 180

Query: 181 VLFRTYSHWRALKGSEILLQLVSDRSYSCNSSTDGNITVNTVQRHPGSTLDLQPSKELDK 240
           VLFRTYSHWRAL+GSE LLQLVSDRSY  NSS+DG    + VQ++ G  LD+QPSKELDK
Sbjct: 181 VLFRTYSHWRALQGSEKLLQLVSDRSYPGNSSSDGKKNEDKVQQYSGPALDMQPSKELDK 240

Query: 241 FLSQMEGSDDITTTIKDICKIFDLNMNNVLKYKDKM 276
           FLSQME S DI T I+DICK+FDLN+ NVLKYKD +
Sbjct: 241 FLSQMEASGDI-TAIRDICKMFDLNIGNVLKYKDAL 275

[Close]

BLAST of Carg13896-RA vs. TrEMBL
Match: tr|A0A0A0K9A3|A0A0A0K9A3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447960 PE=4 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 1.3e-113
Identity = 223/306 (72.88%), Postives = 239/306 (78.10%), Query Frame = 0


Query: 1   MRARLVVFPIRGRNWCFSRSV-------------------------------DPAASDSA 60
           MRARLVVFPIRGRNWCFSRS+                                P  SDS+
Sbjct: 1   MRARLVVFPIRGRNWCFSRSIKHFLHWNFGTXXXXXXXXXXXXXXXXXXXXXXPTVSDSS 60

Query: 61  STQTPSTLKDLWTKISSPSSSKSDAXXXXXXXXNAEIVTDFISFKMNKAWTALEKAPDGS 120
           S QTPST KDLWTKISS SSSKSDA        NAEIVTDFIS KMNKAWTALEKAPDGS
Sbjct: 61  SAQTPSTFKDLWTKISSSSSSKSDALSIANASNNAEIVTDFISSKMNKAWTALEKAPDGS 120

Query: 121 FKNKLHGIGLKLLSRVKPSEIFLKSITKDVTSVEIAYPSSLNPRLVRRRLRHIALRGTAI 180
           FKNKLHGIGLKLLSRVKPSEIFLKSITKDVTSVEI YPSSLNPRLVRRRLRHIA RGT I
Sbjct: 121 FKNKLHGIGLKLLSRVKPSEIFLKSITKDVTSVEITYPSSLNPRLVRRRLRHIAFRGTVI 180

Query: 181 HKKHFYGSVSLLPLASAFTILPLPNIPFFWVLFRTYSHWRALKGSEILLQLVSDRSYSCN 240
           H+K+FY SVSLLPLASAFTILPLPNIPFFWVLFRTYSHWRAL+GSE LLQLVSDRSY  N
Sbjct: 181 HRKYFYSSVSLLPLASAFTILPLPNIPFFWVLFRTYSHWRALQGSEKLLQLVSDRSYPGN 240

Query: 241 SSTDGNITVNTVQRHPGSTLDLQPSKELDKFLSQMEGSDDITTTIKDICKIFDLNMNNVL 276
           SS+DG    + +Q++ G  LD+QPS++LDKFLSQME S DI T IKDICK+FDLN+ NVL
Sbjct: 241 SSSDGKKNEDKIQQYSGPALDMQPSEKLDKFLSQMEASGDI-TAIKDICKMFDLNIANVL 300

[Close]

BLAST of Carg13896-RA vs. TrEMBL
Match: tr|A0A2N9G9M3|A0A2N9G9M3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23961 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.1e-88
Identity = 180/287 (62.72%), Postives = 217/287 (75.61%), Query Frame = 0


Query: 1   MRARLVVFPIRGRNWCFSRSV-DPAASD---SASTQTPSTLKDLWTKISSPSSSKSDAXX 60
           MRA+LVVFPI+G NWCFSRS+ D  AS    SA +QTPSTLK+LW  ISS          
Sbjct: 1   MRAKLVVFPIKGTNWCFSRSINDSIASSNLGSAFSQTPSTLKELWRNISSKPK------- 60

Query: 61  XXXXXXNAEIVTDFISFKMNKAWTALEKAPDGSFKNKLHGIGLKLLSRVKPSEIFLKSIT 120
                 NAE++ DF+S KMN+AW  LEKAP G+ KNK++ +GL LLSRVKPSE+FLKSI+
Sbjct: 61  --PFNANAELLVDFVSLKMNRAWVGLEKAPQGTVKNKIYKLGLGLLSRVKPSEMFLKSIS 120

Query: 121 KDVTSVEIAYPSSLNPRLVRRRLRHIALRGTAIHKKHFYGSVSLLPLASAFTILPLPNIP 180
           K+VT+V+I YPSSLN RLVRRRLRHIA+RGT IHKK+FYGSVSLLPL SAFT+LPLPNIP
Sbjct: 121 KEVTNVQITYPSSLNARLVRRRLRHIAMRGTIIHKKYFYGSVSLLPLTSAFTVLPLPNIP 180

Query: 181 FFWVLFRTYSHWRALKGSEILLQLVSDRSYSCNSSTDG-------NITVNTVQRHPGSTL 240
           FFWVLFRTYSHWRAL+GSE LLQLVSD S + NS+T         + ++N +    GS  
Sbjct: 181 FFWVLFRTYSHWRALQGSEKLLQLVSDSSSTLNSATGNEKETKHDDDSMNGIHNSLGSPW 240

Query: 241 DLQPSKELDKFLSQMEGSDDIT-TTIKDICKIFDLNMNNVLKYKDKM 276
           DLQPSKEL++ L +++  D ++  TI DICKIFDLN N+VLKY+D M
Sbjct: 241 DLQPSKELEELLHRVDEHDGLSKCTISDICKIFDLNTNDVLKYRDSM 278

[Close]

BLAST of Carg13896-RA vs. TrEMBL
Match: tr|A0A2R6PU20|A0A2R6PU20_ACTCH (Uncharacterized protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc22365 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 7.3e-88
Identity = 179/285 (62.81%), Postives = 215/285 (75.44%), Query Frame = 0


Query: 1   MRARLVVFPIRGRNWCFSRSVDPAASDSASTQTPSTLKDLWTKISSPSSSKSDAXXXXXX 60
           MRARLVVFPIRGRNWCF+RS+D +AS+S S+QTPST K+LW  I + +   +++      
Sbjct: 19  MRARLVVFPIRGRNWCFTRSIDRSASESQSSQTPSTFKELWNNIFNSNDKPTES------ 78

Query: 61  XXNAEIVTDFISFKMNKAWTALEKAPDGSFKNKLHGIGLKLLSRVKPSEIFLKSITKDVT 120
             NAE++ DF S KMN+AWT LEKAP GSFK+KLHG+GL+LL+RVKPSEIFLKSI+KDVT
Sbjct: 79  --NAELLIDFASNKMNRAWTGLEKAPPGSFKSKLHGLGLRLLARVKPSEIFLKSISKDVT 138

Query: 121 SVEIAYPSSLNPRLVRRRLRHIALRGTAIHKKHFYGSVSLLPLASAFTILPLPNIPFFWV 180
            VEI YPSSL  R VRRRLRHIALRGT IHK++FYGSVSLLPL +AFT+LPLPNIPFFW+
Sbjct: 139 KVEITYPSSLIARHVRRRLRHIALRGTVIHKRYFYGSVSLLPLTTAFTVLPLPNIPFFWI 198

Query: 181 LFRTYSHWRALKGSEILLQLVSDRSYSCNSSTDGNITVNT-------VQRHPGSTL--DL 240
           LFRTYSHWRALKGSE LLQLVSD S S NSS    +T N        V R+P S     L
Sbjct: 199 LFRTYSHWRALKGSERLLQLVSDSSASQNSSV-AIVTKNNSHGDSEDVMRNPSSPWVGVL 258

Query: 241 QPSKELDKFLSQMEGSDDITTTI-KDICKIFDLNMNNVLKYKDKM 276
           QPS+EL+K +   +    ++  I  DICK FDLN  +V+KY+D +
Sbjct: 259 QPSEELEKLVQHGDADHGLSKCILSDICKTFDLNTMDVVKYRDSV 294

[Close]

BLAST of Carg13896-RA vs. TrEMBL
Match: tr|A0A2C9UYI7|A0A2C9UYI7_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G011500 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.2e-87
Identity = 175/284 (61.62%), Postives = 214/284 (75.35%), Query Frame = 0


Query: 1   MRARLVVFPIRGRNWCFSRSVDPAASDSASTQTPSTLKDLWTKISSPSSSKSDAXXXXXX 60
           MRARLVVFP+RGRNWCFSRS DP+ ++ AS  TPSTLK+LW KISS +S+          
Sbjct: 1   MRARLVVFPVRGRNWCFSRSSDPSIAEEASAYTPSTLKELWKKISSSNSN---------- 60

Query: 61  XXNAEIVTDFISFKMNKAWTALEKAPDGSFKNKLHGIGLKLLSRVKPSEIFLKSITKDVT 120
             NAE++ DF+S KMN+AW  L+KAP+GS KNK+HG+GLKLL+RVKPSEIFLKSI+K++T
Sbjct: 61  AHNAELLIDFVSNKMNRAWMGLQKAPEGSLKNKIHGLGLKLLARVKPSEIFLKSISKEIT 120

Query: 121 SVEIAYPSSLNPRLVRRRLRHIALRGTAIHKKHFYGSVSLLPLASAFTILPLPNIPFFWV 180
            VEI YPSSLN RLVRRRLRHIA+RG A HK++FYGSVSLLPL SAFT+LPLPNIPFFWV
Sbjct: 121 DVEITYPSSLNARLVRRRLRHIAMRGAASHKRYFYGSVSLLPLTSAFTVLPLPNIPFFWV 180

Query: 181 LFRTYSHWRALKGSEILLQLVSDRSYSCNS--------STDGNITVNTVQRHPGSTLDLQ 240
           LFRTYSHWRAL+GSE LLQLVSD  ++ NS         T+   + + V +   S   LQ
Sbjct: 181 LFRTYSHWRALQGSEKLLQLVSDCPHAENSRIPNVKGCETETGGSKHHVHKMRSSLWVLQ 240

Query: 241 PSKELDKFLSQMEGSDDIT-TTIKDICKIFDLNMNNVLKYKDKM 276
           PSKEL++ L   + +D ++   I  ICK F+LNM  V+K+K KM
Sbjct: 241 PSKELEELLHNGDENDGLSKCAISKICKTFNLNMIEVIKFKHKM 274

The following BLAST results are available for this feature:

BLAST of Carg13896-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964630.1	2.2e-144	99.27	uncharacterized protein LOC111464584 [Cucurbita moschata]	[more]
XP_023000133.1	1.4e-143	98.91	uncharacterized protein LOC111494421 [Cucurbita maxima] >XP_023513567.1 uncharac...	[more]
XP_022147084.1	2.4e-122	85.82	uncharacterized protein LOC111016104 isoform X1 [Momordica charantia]	[more]
XP_008462234.1	2.4e-119	82.25	PREDICTED: uncharacterized protein LOC103500639 [Cucumis melo]	[more]
XP_022147092.1	4.2e-119	84.73	uncharacterized protein LOC111016104 isoform X2 [Momordica charantia]	[more]

BLAST of Carg13896-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G53760.1	7.2e-81	58.01	unknown protein	[more]

BLAST of Carg13896-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O13942\|YEPC_SCHPO	3.6e-05	27.78	Uncharacterized protein C23H3.12c OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]

BLAST of Carg13896-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CGF0\|A0A1S3CGF0_CUCME	1.6e-119	82.25	uncharacterized protein LOC103500639 OS=Cucumis melo OX=3656 GN=LOC103500639 PE=...	[more]
tr\|A0A0A0K9A3\|A0A0A0K9A3_CUCSA	1.3e-113	72.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447960 PE=4 SV=1	[more]
tr\|A0A2N9G9M3\|A0A2N9G9M3_FAGSY	1.1e-88	62.72	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23961 PE=4 SV=1	[more]
tr\|A0A2R6PU20\|A0A2R6PU20_ACTCH	7.3e-88	62.81	Uncharacterized protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY0...	[more]
tr\|A0A2C9UYI7\|A0A2C9UYI7_MANES	1.2e-87	61.62	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G011500 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR018786	DUF2343

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg13896	Carg13896	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13896-RA.three_prime_UTR.1	Carg13896-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13896-RA.CDS.8	Carg13896-RA.CDS.8	CDS
Carg13896-RA.CDS.7	Carg13896-RA.CDS.7	CDS
Carg13896-RA.CDS.6	Carg13896-RA.CDS.6	CDS
Carg13896-RA.CDS.5	Carg13896-RA.CDS.5	CDS
Carg13896-RA.CDS.4	Carg13896-RA.CDS.4	CDS
Carg13896-RA.CDS.3	Carg13896-RA.CDS.3	CDS
Carg13896-RA.CDS.2	Carg13896-RA.CDS.2	CDS
Carg13896-RA.CDS.1	Carg13896-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13896-RA.five_prime_UTR.1	Carg13896-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13896-RA.exon.8	Carg13896-RA.exon.8	exon
Carg13896-RA.exon.7	Carg13896-RA.exon.7	exon
Carg13896-RA.exon.6	Carg13896-RA.exon.6	exon
Carg13896-RA.exon.5	Carg13896-RA.exon.5	exon
Carg13896-RA.exon.4	Carg13896-RA.exon.4	exon
Carg13896-RA.exon.3	Carg13896-RA.exon.3	exon
Carg13896-RA.exon.2	Carg13896-RA.exon.2	exon
Carg13896-RA.exon.1	Carg13896-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg13896-RA	Carg13896-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018786	Protein of unknown function DUF2343	PFAM	PF10173	Mit_KHE1	coord: 4..201 e-value: 8.9E-42 score: 143.2
IPR018786	Protein of unknown function DUF2343	PANTHER	PTHR28062	FAMILY NOT NAMED	coord: 1..274