Carg13704-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGATTTTGTTTTCTATCGTAGCTGGACTTGTTGCCCTTGTTGTTGGGAGAGATGTCTTACTTGTTAGTGGTGCTGTATATCAGAGAGCCAATAGCTTGGGTTGGAAGGTGAAAAAATTGAATATTGTTACACTCTAAAAGCCCCTGCAATGCCATCAAATTTTCTTGATGGGATGCTCTGGTTTCTCCGGAACTAGCTTCCGCGCTAATGTTGTTTGAAATTTTTTCAGTGGAGAAGCTGGCATGACTTTTTCAATCTTGACGGTTCCTCTCCCCAAAAGGTTGAGCCTCTGTTTATTAGCAAGGTAATTATAACTTCCAATTGTACAATTACGCTATCAGAAAAGGCTGGATTCAAGCATTTTACTTGGCAAGGATGATGATTGTGTTAGGTCAATACTGTTTTTCAATTGGTATTGGTCTCTGCTGCGCTTCTGCAACCTGAGTTTGGAACACAGGAGACTGAGCTCTATGTCACGCTCTTGAGGTATGTCAGCTACTAGCTTTTTGAGTTTATAATCTCTAGATAACATATCGAAAAACTTACCGGTCTTTCGATCGGGTTGCAGCTGGCTAGTGGCGTCAACAACAGTGGCCTCAACAGCAGCATATGGAGCACAGTTCACGAAGAAGAGTTCTGGGTTGATTGCTGGAAAA ATGGTGATTTTGTTTTCTATCGTAGCTGGACTTGTTGCCCTTGTTGTTGGGAGAGATGTCTTACTTGTTAGTGGTGCTGTATATCAGAGAGCCAATAGCTTGGGTTGGAAGTGGAGAAGCTGGCATGACTTTTTCAATCTTGACGGTTCCTCTCCCCAAAAGGTTGAGCCTCTGTTTATTAGCAAGGTCAATACTGTTTTTCAATTGGTATTGGTCTCTGCTGCGCTTCTGCAACCTGAGTTTGGAACACAGGAGACTGAGCTCTATGTCACGCTCTTGAGCTGGCTAGTGGCGTCAACAACAGTGGCCTCAACAGCAGCATATGGAGCACAGTTCACGAAGAAGAGTTCTGGGTTGATTGCTGGAAAA ATGGTGATTTTGTTTTCTATCGTAGCTGGACTTGTTGCCCTTGTTGTTGGGAGAGATGTCTTACTTGTTAGTGGTGCTGTATATCAGAGAGCCAATAGCTTGGGTTGGAAGTGGAGAAGCTGGCATGACTTTTTCAATCTTGACGGTTCCTCTCCCCAAAAGGTTGAGCCTCTGTTTATTAGCAAGGTCAATACTGTTTTTCAATTGGTATTGGTCTCTGCTGCGCTTCTGCAACCTGAGTTTGGAACACAGGAGACTGAGCTCTATGTCACGCTCTTGAGCTGGCTAGTGGCGTCAACAACAGTGGCCTCAACAGCAGCATATGGAGCACAGTTCACGAAGAAGAGTTCTGGGTTGATTGCTGGAAAA MVILFSIVAGLVALVVGRDVLLVSGAVYQRANSLGWKWRSWHDFFNLDGSSPQKVEPLFISKVNTVFQLVLVSAALLQPEFGTQETELYVTLLSWLVASTTVASTAAYGAQFTKKSSGLIAGK
BLAST of Carg13704-RA vs. NCBI nr
Match: XP_022950203.1 (cardiolipin synthase (CMP-forming), mitochondrial [Cucurbita moschata]) HSP 1 Score: 218.0 bits (554), Expect = 1.8e-53 Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 0
BLAST of Carg13704-RA vs. NCBI nr
Match: XP_023544055.1 (cardiolipin synthase (CMP-forming), mitochondrial [Cucurbita pepo subsp. pepo]) HSP 1 Score: 218.0 bits (554), Expect = 1.8e-53 Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 0
BLAST of Carg13704-RA vs. NCBI nr
Match: XP_022977724.1 (cardiolipin synthase (CMP-forming), mitochondrial [Cucurbita maxima]) HSP 1 Score: 211.8 bits (538), Expect = 1.3e-51 Identity = 109/114 (95.61%), Postives = 111/114 (97.37%), Query Frame = 0
BLAST of Carg13704-RA vs. NCBI nr
Match: XP_004134756.1 (PREDICTED: cardiolipin synthase (CMP-forming), mitochondrial [Cucumis sativus] >KGN49121.1 hypothetical protein Csa_6G514820 [Cucumis sativus]) HSP 1 Score: 207.2 bits (526), Expect = 3.1e-50 Identity = 107/114 (93.86%), Postives = 109/114 (95.61%), Query Frame = 0
BLAST of Carg13704-RA vs. NCBI nr
Match: XP_022142090.1 (cardiolipin synthase (CMP-forming), mitochondrial [Momordica charantia]) HSP 1 Score: 205.7 bits (522), Expect = 9.1e-50 Identity = 106/114 (92.98%), Postives = 108/114 (94.74%), Query Frame = 0
BLAST of Carg13704-RA vs. TAIR10
Match: AT4G04870.1 (cardiolipin synthase) HSP 1 Score: 157.1 bits (396), Expect = 6.8e-39 Identity = 77/106 (72.64%), Postives = 90/106 (84.91%), Query Frame = 0
BLAST of Carg13704-RA vs. Swiss-Prot
Match: sp|Q93YW7|CLS_ARATH (Cardiolipin synthase (CMP-forming), mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CLS PE=1 SV=1) HSP 1 Score: 157.1 bits (396), Expect = 1.2e-37 Identity = 77/106 (72.64%), Postives = 90/106 (84.91%), Query Frame = 0
BLAST of Carg13704-RA vs. Swiss-Prot
Match: sp|Q5N9A1|PGPS1_ORYSJ (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0789100 PE=2 SV=1) HSP 1 Score: 153.3 bits (386), Expect = 1.8e-36 Identity = 75/103 (72.82%), Postives = 89/103 (86.41%), Query Frame = 0
BLAST of Carg13704-RA vs. Swiss-Prot
Match: sp|Q80ZM8|CRLS1_MOUSE (Cardiolipin synthase (CMP-forming) OS=Mus musculus OX=10090 GN=Crls1 PE=1 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 3.2e-06 Identity = 39/113 (34.51%), Postives = 65/113 (57.52%), Query Frame = 0
BLAST of Carg13704-RA vs. Swiss-Prot
Match: sp|Q5U2V5|CRLS1_RAT (Cardiolipin synthase (CMP-forming) OS=Rattus norvegicus OX=10116 GN=Crls1 PE=2 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 3.2e-06 Identity = 39/113 (34.51%), Postives = 65/113 (57.52%), Query Frame = 0
BLAST of Carg13704-RA vs. Swiss-Prot
Match: sp|Q9UJA2|CRLS1_HUMAN (Cardiolipin synthase (CMP-forming) OS=Homo sapiens OX=9606 GN=CRLS1 PE=1 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 5.5e-06 Identity = 35/98 (35.71%), Postives = 57/98 (58.16%), Query Frame = 0
BLAST of Carg13704-RA vs. TrEMBL
Match: tr|A0A0A0KN19|A0A0A0KN19_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514820 PE=3 SV=1) HSP 1 Score: 207.2 bits (526), Expect = 2.1e-50 Identity = 107/114 (93.86%), Postives = 109/114 (95.61%), Query Frame = 0
BLAST of Carg13704-RA vs. TrEMBL
Match: tr|A0A1S3B012|A0A1S3B012_CUCME (cardiolipin synthase (CMP-forming), mitochondrial OS=Cucumis melo OX=3656 GN=LOC103484603 PE=3 SV=1) HSP 1 Score: 199.5 bits (506), Expect = 4.3e-48 Identity = 105/114 (92.11%), Postives = 108/114 (94.74%), Query Frame = 0
BLAST of Carg13704-RA vs. TrEMBL
Match: tr|W9RFF5|W9RFF5_9ROSA (Cardiolipin synthase OS=Morus notabilis OX=981085 GN=L484_012871 PE=3 SV=1) HSP 1 Score: 178.3 bits (451), Expect = 1.0e-41 Identity = 87/114 (76.32%), Postives = 101/114 (88.60%), Query Frame = 0
BLAST of Carg13704-RA vs. TrEMBL
Match: tr|A0A2P5APM2|A0A2P5APM2_PARAD (CDP-alcohol phosphatidyltransferase OS=Parasponia andersonii OX=3476 GN=PanWU01x14_312810 PE=3 SV=1) HSP 1 Score: 175.6 bits (444), Expect = 6.7e-41 Identity = 87/114 (76.32%), Postives = 98/114 (85.96%), Query Frame = 0
BLAST of Carg13704-RA vs. TrEMBL
Match: tr|A0A2N9IRH4|A0A2N9IRH4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55314 PE=3 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 1.1e-40 Identity = 88/114 (77.19%), Postives = 99/114 (86.84%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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