Carg13662-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATATTCACAAACACCAAATCAATCATATTCTTATTCATGGTTGATTTAACCTGTTCAATGATATTCAAATAATGATGCTTTTGTTATGTTTTTCCTTAATAGGATTGTTACGGTGTGGAAAAAGTTGTCGCTTAAGATGGATCAATTACCTTCGACCCGATGTGAAGCGAGGAAACTTTACACAAGATGAAGAGGAGACCATAATCAAGCTGCATAAAACTTGGGGAAACAAGTATGATTCTTATTTACTTCATCTTTATCTTCTTAGAGTAAATGATGAATTAGGAGTTTTTAATACTAATTAAAATCGTGATCAATATCTTTGATTCACTCCTAGTCTACTTAACTACTAACATGTACGTTTAGGTTAATTAAATCATATAAAGTTATATCTTTTGCTTTTTATGTATTTTAAAAAGTTTATAATATGAGAGATCCTTACCATTGGTAAATTTGTGTGAGATTCTTTTACTAATAAAATAAAATTCGTTCCTGGGTTTAATAGAATTGAGAATATGCATATTATTGCAGGTGGTCTAAAATTGCATCTCGATTGCCTGGGAGAACAGATAATGAGATAAAGAACGTTTGGAATACACATTTAAAGAAGAGATTACTGCCAACGAGCAAAGTTTCGGACAGCTCCGAAGACGAACCAAAAGAATCTCGAACAACTTCATCTTCGTCCTCCTCCAGCGTACTCTTCTCCAATGAAAATCAAAATTTAGAGACAGAACCACTGAACAAGTGCAACCCCATTAACGACAACCTAGTTTGCTCGAAACAACAAACCACCAGTACTTCCATTTCATCCAACTCAATTTCAAGTAGCCAAGTTGAGGGATGTTGGCCCCAAAACCGCGTTGATTTTGGAGAGGAAGTGAAAGAGAAGAAAGAGAATGATGATGATGAGGAGGAAATGGGATCGAAGTCCAACAACATGGGAATCAAAATCCCATTGGAATCCGACATAGAATTTTGGGACATGTTAGATTTAGACAACATACATTTATTCGAATCGGACGAGGTGGATCAGAGTTTTTGTGAAGGTTCAAACTTCGTCGTACAAAAGAACCAGGAATTCGAAAACGACAAGTGGTTTAAGTATCTAGAGAATGAGTTGGGACTGAACCGGCCACCAGAAGCCGATGATATAACGGCCACGGAGAGGTTTTCAGTGGACGTGGACCCTTGCATGGCTTATTTTGCAGAAGGGTTCACACGACAACTTTAG ATGAATATTCACAAACACCAAATCAATCATATTCTTATTCATGGATTGTTACGGTGTGGAAAAAGTTGTCGCTTAAGATGGATCAATTACCTTCGACCCGATGTGAAGCGAGGAAACTTTACACAAGATGAAGAGGAGACCATAATCAAGCTGCATAAAACTTGGGGAAACAAGTGGTCTAAAATTGCATCTCGATTGCCTGGGAGAACAGATAATGAGATAAAGAACGTTTGGAATACACATTTAAAGAAGAGATTACTGCCAACGAGCAAAGTTTCGGACAGCTCCGAAGACGAACCAAAAGAATCTCGAACAACTTCATCTTCGTCCTCCTCCAGCGTACTCTTCTCCAATGAAAATCAAAATTTAGAGACAGAACCACTGAACAAGTGCAACCCCATTAACGACAACCTAGTTTGCTCGAAACAACAAACCACCAGTACTTCCATTTCATCCAACTCAATTTCAAGTAGCCAAGTTGAGGGATGTTGGCCCCAAAACCGCGTTGATTTTGGAGAGGAAGTGAAAGAGAAGAAAGAGAATGATGATGATGAGGAGGAAATGGGATCGAAGTCCAACAACATGGGAATCAAAATCCCATTGGAATCCGACATAGAATTTTGGGACATGTTAGATTTAGACAACATACATTTATTCGAATCGGACGAGGTGGATCAGAGTTTTTGTGAAGGTTCAAACTTCGTCGTACAAAAGAACCAGGAATTCGAAAACGACAAGTGGTTTAAGTATCTAGAGAATGAGTTGGGACTGAACCGGCCACCAGAAGCCGATGATATAACGGCCACGGAGAGGTTTTCAGTGGACGTGGACCCTTGCATGGCTTATTTTGCAGAAGGGTTCACACGACAACTTTAG ATGAATATTCACAAACACCAAATCAATCATATTCTTATTCATGGATTGTTACGGTGTGGAAAAAGTTGTCGCTTAAGATGGATCAATTACCTTCGACCCGATGTGAAGCGAGGAAACTTTACACAAGATGAAGAGGAGACCATAATCAAGCTGCATAAAACTTGGGGAAACAAGTGGTCTAAAATTGCATCTCGATTGCCTGGGAGAACAGATAATGAGATAAAGAACGTTTGGAATACACATTTAAAGAAGAGATTACTGCCAACGAGCAAAGTTTCGGACAGCTCCGAAGACGAACCAAAAGAATCTCGAACAACTTCATCTTCGTCCTCCTCCAGCGTACTCTTCTCCAATGAAAATCAAAATTTAGAGACAGAACCACTGAACAAGTGCAACCCCATTAACGACAACCTAGTTTGCTCGAAACAACAAACCACCAGTACTTCCATTTCATCCAACTCAATTTCAAGTAGCCAAGTTGAGGGATGTTGGCCCCAAAACCGCGTTGATTTTGGAGAGGAAGTGAAAGAGAAGAAAGAGAATGATGATGATGAGGAGGAAATGGGATCGAAGTCCAACAACATGGGAATCAAAATCCCATTGGAATCCGACATAGAATTTTGGGACATGTTAGATTTAGACAACATACATTTATTCGAATCGGACGAGGTGGATCAGAGTTTTTGTGAAGGTTCAAACTTCGTCGTACAAAAGAACCAGGAATTCGAAAACGACAAGTGGTTTAAGTATCTAGAGAATGAGTTGGGACTGAACCGGCCACCAGAAGCCGATGATATAACGGCCACGGAGAGGTTTTCAGTGGACGTGGACCCTTGCATGGCTTATTTTGCAGAAGGGTTCACACGACAACTTTAG MNIHKHQINHILIHGLLRCGKSCRLRWINYLRPDVKRGNFTQDEEETIIKLHKTWGNKWSKIASRLPGRTDNEIKNVWNTHLKKRLLPTSKVSDSSEDEPKESRTTSSSSSSSVLFSNENQNLETEPLNKCNPINDNLVCSKQQTTSTSISSNSISSSQVEGCWPQNRVDFGEEVKEKKENDDDEEEMGSKSNNMGIKIPLESDIEFWDMLDLDNIHLFESDEVDQSFCEGSNFVVQKNQEFENDKWFKYLENELGLNRPPEADDITATERFSVDVDPCMAYFAEGFTRQL
BLAST of Carg13662-RA vs. NCBI nr
Match: XP_022947599.1 (transcription factor MYB63-like [Cucurbita moschata]) HSP 1 Score: 479.6 bits (1233), Expect = 7.7e-132 Identity = 268/277 (96.75%), Postives = 268/277 (96.75%), Query Frame = 0
BLAST of Carg13662-RA vs. NCBI nr
Match: XP_022970835.1 (transcription factor MYB63-like [Cucurbita maxima]) HSP 1 Score: 465.3 bits (1196), Expect = 1.5e-127 Identity = 239/277 (86.28%), Postives = 246/277 (88.81%), Query Frame = 0
BLAST of Carg13662-RA vs. NCBI nr
Match: XP_023532475.1 (transcription factor MYB58-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 457.6 bits (1176), Expect = 3.2e-125 Identity = 261/277 (94.22%), Postives = 266/277 (96.03%), Query Frame = 0
BLAST of Carg13662-RA vs. NCBI nr
Match: XP_023511898.1 (transcription factor MYB63-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 320.1 bits (819), Expect = 7.9e-84 Identity = 181/282 (64.18%), Postives = 206/282 (73.05%), Query Frame = 0
BLAST of Carg13662-RA vs. NCBI nr
Match: XP_022986071.1 (transcription factor MYB63-like [Cucurbita maxima]) HSP 1 Score: 319.7 bits (818), Expect = 1.0e-83 Identity = 190/279 (68.10%), Postives = 211/279 (75.63%), Query Frame = 0
BLAST of Carg13662-RA vs. TAIR10
Match: AT1G79180.1 (myb domain protein 63) HSP 1 Score: 155.2 bits (391), Expect = 6.1e-38 Identity = 98/245 (40.00%), Postives = 130/245 (53.06%), Query Frame = 0
BLAST of Carg13662-RA vs. TAIR10
Match: AT1G16490.1 (myb domain protein 58) HSP 1 Score: 153.7 bits (387), Expect = 1.8e-37 Identity = 93/243 (38.27%), Postives = 129/243 (53.09%), Query Frame = 0
BLAST of Carg13662-RA vs. TAIR10
Match: AT1G56160.1 (myb domain protein 72) HSP 1 Score: 142.1 bits (357), Expect = 5.3e-34 Identity = 69/92 (75.00%), Postives = 75/92 (81.52%), Query Frame = 0
BLAST of Carg13662-RA vs. TAIR10
Match: AT3G12820.1 (myb domain protein 10) HSP 1 Score: 139.0 bits (349), Expect = 4.5e-33 Identity = 60/73 (82.19%), Postives = 68/73 (93.15%), Query Frame = 0
BLAST of Carg13662-RA vs. TAIR10
Match: AT2G16720.1 (myb domain protein 7) HSP 1 Score: 137.1 bits (344), Expect = 1.7e-32 Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 0
BLAST of Carg13662-RA vs. Swiss-Prot
Match: sp|Q6R0A6|MYB63_ARATH (Transcription factor MYB63 OS=Arabidopsis thaliana OX=3702 GN=MYB63 PE=2 SV=1) HSP 1 Score: 155.2 bits (391), Expect = 1.1e-36 Identity = 98/245 (40.00%), Postives = 130/245 (53.06%), Query Frame = 0
BLAST of Carg13662-RA vs. Swiss-Prot
Match: sp|Q9SA47|MYB58_ARATH (Transcription factor MYB58 OS=Arabidopsis thaliana OX=3702 GN=MYB58 PE=2 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 3.2e-36 Identity = 93/243 (38.27%), Postives = 129/243 (53.09%), Query Frame = 0
BLAST of Carg13662-RA vs. Swiss-Prot
Match: sp|Q9SGU3|MYB72_ARATH (Transcription factor MYB72 OS=Arabidopsis thaliana OX=3702 GN=MYB72 PE=1 SV=1) HSP 1 Score: 142.1 bits (357), Expect = 9.6e-33 Identity = 69/92 (75.00%), Postives = 75/92 (81.52%), Query Frame = 0
BLAST of Carg13662-RA vs. Swiss-Prot
Match: sp|Q9LTV4|MYB10_ARATH (Transcription factor MYB10 OS=Arabidopsis thaliana OX=3702 GN=MYB10 PE=2 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 8.1e-32 Identity = 60/73 (82.19%), Postives = 68/73 (93.15%), Query Frame = 0
BLAST of Carg13662-RA vs. Swiss-Prot
Match: sp|P20024|MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays OX=4577 PE=2 SV=1) HSP 1 Score: 137.1 bits (344), Expect = 3.1e-31 Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 0
BLAST of Carg13662-RA vs. TrEMBL
Match: tr|A0A1S3C3L5|A0A1S3C3L5_CUCME (myb-related protein Myb4 OS=Cucumis melo OX=3656 GN=LOC103496292 PE=4 SV=1) HSP 1 Score: 263.5 bits (672), Expect = 5.8e-67 Identity = 186/289 (64.36%), Postives = 200/289 (69.20%), Query Frame = 0
BLAST of Carg13662-RA vs. TrEMBL
Match: tr|A0A2P4L566|A0A2P4L566_QUESU (Transcription factor myb63 OS=Quercus suber OX=58331 GN=CFP56_69596 PE=4 SV=1) HSP 1 Score: 187.2 bits (474), Expect = 5.3e-44 Identity = 132/318 (41.51%), Postives = 184/318 (57.86%), Query Frame = 0
BLAST of Carg13662-RA vs. TrEMBL
Match: tr|A0A2N9E1A5|A0A2N9E1A5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS439 PE=4 SV=1) HSP 1 Score: 186.8 bits (473), Expect = 6.9e-44 Identity = 127/292 (43.49%), Postives = 173/292 (59.25%), Query Frame = 0
BLAST of Carg13662-RA vs. TrEMBL
Match: tr|A0A0A0KD77|A0A0A0KD77_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G136580 PE=4 SV=1) HSP 1 Score: 186.4 bits (472), Expect = 9.0e-44 Identity = 132/284 (46.48%), Postives = 143/284 (50.35%), Query Frame = 0
BLAST of Carg13662-RA vs. TrEMBL
Match: tr|A0A2P5SAC3|A0A2P5SAC3_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD07030 PE=4 SV=1) HSP 1 Score: 179.1 bits (453), Expect = 1.4e-41 Identity = 119/278 (42.81%), Postives = 147/278 (52.88%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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