Carg13494-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13494-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Tubby-like protein
Location	Cucurbita_argyrosperma_scaffold_049 : 767227 .. 770811 (-)
Sequence length	1348

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATGCTCTCTTTCTTCCTCGCGTATAAATTCCAGGTTATGAATCCAGAGATAGAGACTAGACCACAAAATACCTTCCCCCATTTTCTCATTCTCTTAACTCTTCCCCTGTTCTTGTCTCAACAGACAAAAGCATGAGTGGTGACAAGAAGACGATCATTCAACGCCAAACTTCCTATAATCCTCTCTATGTTAATCCCCTTACTGACCTCCGGCACAACCGTAGCTGTAGCGACGGCGGATTCCGGCAAGGTAAGGAAAACTTGACACCCAATACGAAGGAGAAACAGAGCGATGAAAATGGAGTGCTCTGCGACAAAGAAAACGCGAATCCGAGTAATGGGTCTTGTGCTAATCCTAAGAAATTTGGGGATTTCAAGTCGTTTTCGACTGGGAAGGCGTTGAAGCCTTCGTCGCTTCATCTGTGTATGCAGATGAATGAACCAGATAAGATTTTTGGGTCTAGGTTGTGGGAGGGGACTGATTCAGAGCACTCGAGTTCGTTGAAGATTTGGGACTTTTCGGATTCTGAAGCTGCTCCAGCTTCTTCCTGGTCCACATTGCCTAACAGGTGGTTTTTCTTATTAGTTCTCTGTTTTTTGAGAACTAAATTAAGCTTACCATCTCACAACCTTTGTTGAACAAGACATTGAATACTCATTTTGATTACCATTTCAACTACTACCTCACAGCTTCTTTTGAGGATGTTAAGGATGCGATTATGTTTTGTGTTTTGTTTTTTTTTCAGGTCGTTGTTGTGTAGGCCATTGCCTGTGGATGTGGGGAGATGTACCTGTGTCATTGTGAAGGAGAAGTCACCGGATGGGCTTCGTGGTGGTGCTTTCTATTCTCTCTATACCAATGTAAGTTTGTCTCTTCTGTTAAGAATGAGAAATAGAAAAGAGGTATATTGGATCGAAAGTATGATCTTCAATCATGTTTGTACCACGCTTAAATAGGATACAAACATCAACTAATACCAAAAATAGAAAAAATTATATATCTAACTAAATCTGGTAAAATAAATAAAATATTACGGTTAATCAAATCCTATACTAACAATCCCTAAATATCTGAGATAATTGCTAACTAATTATCACCGCAAATATCCTCTTAATTACTCCCCCACAAGTTGGAGAGTGTATGTTAATCACCTCCAACTTTGTCTTAAAGTTGTCTTTACGGTAGCGCAATAACCACCCAAGTGTAAATCTTTCACTCGTTGTCTTTCCCAGTAATGAAAATATCTGTCAAAAAATAGACCGCCTTTGATTGGTTTGCATTTTTAGACTTTCAAGAAATTATTGAATTTTCAAGAAAGATGCAAGACTCAGAAGTAGGCTGCCTTTGATCGGTTTGCATTTTTAGACTTTCAAGAAATTATTGAATTTTCAAGAAAGATGCAAGACTCAGAAATAGACCGCAATGATTGACTTCAAAATTCAAATCTAGTTCTGAAAACTCGAAGCAAAATGGTTAGAAATAGTGCCCTTTTAATCGGGTTATTGTAAACATCACAAGCCTACCACTAACAGGTATTGTTTGCTTTGGCATGTTATGTATAGCTGCTAGTTTTACAGTTTTAAAACGCGTCTTTTAGGAGAGTTTTCCACACATTTATATAGAATACTTTGTTCTCCTCTCAAACCGACATAGGATCTGACAGTTAGTTTGCTTACGCCAAATCTTCATCGTTCAGTTTTAGTCTTTTTGAGGATGGTTGTGTTTATGTTTCTCTAACCTTGAGATTTTGATTATCTATCTTAAAACCAAGAGTGTTTTATGAGAAATTTAGGACTTTCCAACTCAACCCTCCAAGAAAAATAGAACAATAGAAACTCCCAACCCTGCAACTACTTACTTGTTTTTGGTGAACATCTTGGTATCAGGAAGGGAAGGGAAGGCAGGATCGGAAGTTGGCGGTGGCTCGGCATCGACGACGGAATGGGAGGTCAGAGTATAAAATAGCTCAGAGTGCAAGAGGGATATTGTGCAATGCAGATGATAGTTTTGTTGGATCCATGACTACAAACCTTGTTGGTTCGAAATATCATATATGGGATCAGGTTTAATGGAATGTTCAATTGTGTTGAATTAGAAAGAAGTTTGCAGAGTACCTATGATTATGACATGGTTTCTTTTCATGTTCGTTCTCAGGCGAGCCGACTGAAACCCATCCCGAGCCAGTCGAAATCGCTTCTTGCTGCTGTAACGTAGGCCGCCTGTTTTTTCTTATCTCTCTATTTTCTTCCTCCTCCCTATTTCTCGTTTGGAGTAACTGATTTGCCTGTTTTTTCTACAGATTCATGCCTACAATAACCACTTGGACAGGCAGTCATAGAAGCATGAAGGCTTTCATCCCCAAGCATCAAACAATTCAGCTGAAGAACACCAATCAGGTGCTTAAGAACATATGAAAATCTTTTCAACTCTTACAAGGCTTTGTGAGAATTTTGTACCAACAATGTGATATGATACACTGGACCCAATAGGGAGGTGAATTGTGAGATTTCACGTTAGTTGGAGAGAGGAACAAAACATTCTTTTACAATGGTGTGGAAACCTCTCCCTAGCAGATGCGTTTTAAAAATCTTGAGGGGAAGCCTAAAGAGGACAATATCCGCTAGCCGTGGGCTTCAACGGTTACAAAACATCAATGAAACAATAGTTCAATAAAAGTCATTGAGTTGCTATTAGTAGTTCATATCATATTGTAGGCATTTCGAATACTTCTCGATATTTTTCGAATGTTTTCAAAACTTTTAAAATAGCTGCTTGATTGTATGCTGTAGCAGGTGCAGCACATCGCAGGGCTGCCAAGGGAGTGGGAGGAAGAAAAGACCAAAGTCCACCAACTTGTTTCTAGAGTTCCTCAATACAACAAGGTGAATTGGAAATTGTAATTCAAAACTCTTCAATAGAGACTTGAAGTCTTTTGGGATATTCCTCAATGTTTCACTGCTCTTGGTTGTTCTTCAGATTTCTAAGCAATATGAGTTGGACTTCAGAGACAGAGGAAGAGCAGTTTCAGGTCTTATGATCCAAACCTCTGTGAAGAATTTTCAGTTAACTTTAGAGGTACAAATCTACATTCTAATGAGATAGAAAGAGAATGAATTTCAATTATAGAAGAGGCTGAGCTTGTTAGTGGGTCTTTGGCACAGGAAAATGGCAAGCAAACAATTCTCCAACTTGGAAGGATTGGGAAGTCCAAGTATGTGATGGATTATAGGTAAGCAGATCAATTCCTAGTCAGTTTGAAGAAAATAAAACTTGAAAAAAACCCTTCTTTGTGTTCATTGGAAATAAAACCGACCAAAACCAACTGGATGTCCTATCATTTAGTCGTTGTACTTTCATGCTACTATCTAAAAGGTCATCGACTTGTTAGAAAACGAAACACCATTAGATATAAAATTGAATTTTGTCCGGTAGAACATTAAAGTTTCAATTAGCTCATAGACTTGTGGGATGTTGATAAGAATTATGGGGTGTTTTGTGTTTTGGCAGGTATCCATTGACAGGTTACCAAGCATTTTGCATATGCCTGGCTTCCATAGATTCAAAGCTTTGTTGCTCAGTATGA

mRNA sequence

TAATGCTCTCTTTCTTCCTCGCGTATAAATTCCAGGTTATGAATCCAGAGATAGAGACTAGACCACAAAATACCTTCCCCCATTTTCTCATTCTCTTAACTCTTCCCCTGTTCTTGTCTCAACAGACAAAAGCATGAGTGGTGACAAGAAGACGATCATTCAACGCCAAACTTCCTATAATCCTCTCTATGTTAATCCCCTTACTGACCTCCGGCACAACCGTAGCTGTAGCGACGGCGGATTCCGGCAAGGTAAGGAAAACTTGACACCCAATACGAAGGAGAAACAGAGCGATGAAAATGGAGTGCTCTGCGACAAAGAAAACGCGAATCCGAGTAATGGGTCTTGTGCTAATCCTAAGAAATTTGGGGATTTCAAGTCGTTTTCGACTGGGAAGGCGTTGAAGCCTTCGTCGCTTCATCTGTGTATGCAGATGAATGAACCAGATAAGATTTTTGGGTCTAGGTTGTGGGAGGGGACTGATTCAGAGCACTCGAGTTCGTTGAAGATTTGGGACTTTTCGGATTCTGAAGCTGCTCCAGCTTCTTCCTGGTCCACATTGCCTAACAGGTCGTTGTTGTGTAGGCCATTGCCTGTGGATGTGGGGAGATGTACCTGTGTCATTGTGAAGGAGAAGTCACCGGATGGGCTTCGTGGTGGTGCTTTCTATTCTCTCTATACCAATGAAGGGAAGGGAAGGCAGGATCGGAAGTTGGCGGTGGCTCGGCATCGACGACGGAATGGGAGGTCAGAGTATAAAATAGCTCAGAGTGCAAGAGGGATATTGTGCAATGCAGATGATAGTTTTGTTGGATCCATGACTACAAACCTTGTTGGTTCGAAATATCATATATGGGATCAGGCGAGCCGACTGAAACCCATCCCGAGCCAGTCGAAATCGCTTCTTGCTGCTGTAACATTCATGCCTACAATAACCACTTGGACAGGCAGTCATAGAAGCATGAAGGCTTTCATCCCCAAGCATCAAACAATTCAGCTGAAGAACACCAATCAGGTGCAGCACATCGCAGGGCTGCCAAGGGAGTGGGAGGAAGAAAAGACCAAAGTCCACCAACTTGTTTCTAGAGTTCCTCAATACAACAAGATTTCTAAGCAATATGAGTTGGACTTCAGAGACAGAGGAAGAGCAGTTTCAGGTCTTATGATCCAAACCTCTGTGAAGAATTTTCAGTTAACTTTAGAGGAAAATGGCAAGCAAACAATTCTCCAACTTGGAAGGATTGGGAAGTCCAAGTATGTGATGGATTATAGGTATCCATTGACAGGTTACCAAGCATTTTGCATATGCCTGGCTTCCATAGATTCAAAGCTTTGTTGCTCAGTATGA

Coding sequence (CDS)

ATGAGTGGTGACAAGAAGACGATCATTCAACGCCAAACTTCCTATAATCCTCTCTATGTTAATCCCCTTACTGACCTCCGGCACAACCGTAGCTGTAGCGACGGCGGATTCCGGCAAGGTAAGGAAAACTTGACACCCAATACGAAGGAGAAACAGAGCGATGAAAATGGAGTGCTCTGCGACAAAGAAAACGCGAATCCGAGTAATGGGTCTTGTGCTAATCCTAAGAAATTTGGGGATTTCAAGTCGTTTTCGACTGGGAAGGCGTTGAAGCCTTCGTCGCTTCATCTGTGTATGCAGATGAATGAACCAGATAAGATTTTTGGGTCTAGGTTGTGGGAGGGGACTGATTCAGAGCACTCGAGTTCGTTGAAGATTTGGGACTTTTCGGATTCTGAAGCTGCTCCAGCTTCTTCCTGGTCCACATTGCCTAACAGGTCGTTGTTGTGTAGGCCATTGCCTGTGGATGTGGGGAGATGTACCTGTGTCATTGTGAAGGAGAAGTCACCGGATGGGCTTCGTGGTGGTGCTTTCTATTCTCTCTATACCAATGAAGGGAAGGGAAGGCAGGATCGGAAGTTGGCGGTGGCTCGGCATCGACGACGGAATGGGAGGTCAGAGTATAAAATAGCTCAGAGTGCAAGAGGGATATTGTGCAATGCAGATGATAGTTTTGTTGGATCCATGACTACAAACCTTGTTGGTTCGAAATATCATATATGGGATCAGGCGAGCCGACTGAAACCCATCCCGAGCCAGTCGAAATCGCTTCTTGCTGCTGTAACATTCATGCCTACAATAACCACTTGGACAGGCAGTCATAGAAGCATGAAGGCTTTCATCCCCAAGCATCAAACAATTCAGCTGAAGAACACCAATCAGGTGCAGCACATCGCAGGGCTGCCAAGGGAGTGGGAGGAAGAAAAGACCAAAGTCCACCAACTTGTTTCTAGAGTTCCTCAATACAACAAGATTTCTAAGCAATATGAGTTGGACTTCAGAGACAGAGGAAGAGCAGTTTCAGGTCTTATGATCCAAACCTCTGTGAAGAATTTTCAGTTAACTTTAGAGGAAAATGGCAAGCAAACAATTCTCCAACTTGGAAGGATTGGGAAGTCCAAGTATGTGATGGATTATAGGTATCCATTGACAGGTTACCAAGCATTTTGCATATGCCTGGCTTCCATAGATTCAAAGCTTTGTTGCTCAGTATGA

Protein sequence

MSGDKKTIIQRQTSYNPLYVNPLTDLRHNRSCSDGGFRQGKENLTPNTKEKQSDENGVLCDKENANPSNGSCANPKKFGDFKSFSTGKALKPSSLHLCMQMNEPDKIFGSRLWEGTDSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLRGGAFYSLYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKYHIWDQASRLKPIPSQSKSLLAAVTFMPTITTWTGSHRSMKAFIPKHQTIQLKNTNQVQHIAGLPREWEEEKTKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV

Homology

[Close]

BLAST of Carg13494-RA vs. NCBI nr
Match: XP_022959736.1 (tubby-like protein 8 isoform X2 [Cucurbita moschata])

HSP 1 Score: 818.1 bits (2112), Expect = 1.3e-233
Identity = 403/404 (99.75%), Postives = 403/404 (99.75%), Query Frame = 0


Query: 1   MSGDKKTIIQRQTSYNPLYVNPLTDLRHNRSCSDGGFRQGKENLTPNTKEKQSDENGVLC 60
           MSGDKKTIIQRQTSYNPLYVNPLTDLRHNRSCSDGGFRQGKENLTPNTKEKQSDENGVLC
Sbjct: 1   MSGDKKTIIQRQTSYNPLYVNPLTDLRHNRSCSDGGFRQGKENLTPNTKEKQSDENGVLC 60

Query: 61  DKENANPSNGSCANPKKFGDFKSFSTGKALKPSSLHLCMQMNEPDKIFGSRLWEGTDSEH 120
           DKENANPSNGSCANPKKFGDFKSFSTGKALKPSSLHLCMQMNEPDKIFGSRLWEGTDSEH
Sbjct: 61  DKENANPSNGSCANPKKFGDFKSFSTGKALKPSSLHLCMQMNEPDKIFGSRLWEGTDSEH 120

Query: 121 SSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLRGGAFYS 180
           SSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLRGGAFYS
Sbjct: 121 SSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLRGGAFYS 180

Query: 181 LYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKYHI 240
           LYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKYHI
Sbjct: 181 LYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKYHI 240

Query: 241 WDQASRLKPIPSQSKSLLAAVTFMPTITTWTGSHRSMKAFIPKHQTIQLKNTNQVQHIAG 300
           WDQASRLKPI SQSKSLLAAVTFMPTITTWTGSHRSMKAFIPKHQTIQLKNTNQVQHIAG
Sbjct: 241 WDQASRLKPILSQSKSLLAAVTFMPTITTWTGSHRSMKAFIPKHQTIQLKNTNQVQHIAG 300

Query: 301 LPREWEEEKTKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEENG 360
           LPREWEEEKTKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEENG
Sbjct: 301 LPREWEEEKTKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEENG 360

Query: 361 KQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 405
           KQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV
Sbjct: 361 KQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 404

[Close]

BLAST of Carg13494-RA vs. NCBI nr
Match: XP_023513542.1 (tubby-like protein 8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 814.7 bits (2103), Expect = 1.4e-232
Identity = 400/404 (99.01%), Postives = 402/404 (99.50%), Query Frame = 0


Query: 1   MSGDKKTIIQRQTSYNPLYVNPLTDLRHNRSCSDGGFRQGKENLTPNTKEKQSDENGVLC 60
           MSGDKKTIIQRQTSYNPLYVNPLTDLRHNRSCSDGGFRQGKENLTPNTKEKQSDENGVLC
Sbjct: 1   MSGDKKTIIQRQTSYNPLYVNPLTDLRHNRSCSDGGFRQGKENLTPNTKEKQSDENGVLC 60

Query: 61  DKENANPSNGSCANPKKFGDFKSFSTGKALKPSSLHLCMQMNEPDKIFGSRLWEGTDSEH 120
           DKENA P NGSCANPKKFGDFKSFSTGKALKPSSLHLCMQMNEPDK+FGS+LWEGTDSEH
Sbjct: 61  DKENAIPINGSCANPKKFGDFKSFSTGKALKPSSLHLCMQMNEPDKVFGSKLWEGTDSEH 120

Query: 121 SSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLRGGAFYS 180
           SSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLRGGAFYS
Sbjct: 121 SSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLRGGAFYS 180

Query: 181 LYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKYHI 240
           LYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKYHI
Sbjct: 181 LYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKYHI 240

Query: 241 WDQASRLKPIPSQSKSLLAAVTFMPTITTWTGSHRSMKAFIPKHQTIQLKNTNQVQHIAG 300
           WDQASRLKPIPSQSKSLLAAVTFMPTITTWTGSHRSMKAFIPKHQTIQLKNTNQVQHIAG
Sbjct: 241 WDQASRLKPIPSQSKSLLAAVTFMPTITTWTGSHRSMKAFIPKHQTIQLKNTNQVQHIAG 300

Query: 301 LPREWEEEKTKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEENG 360
           LPREWEEEKTKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEENG
Sbjct: 301 LPREWEEEKTKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEENG 360

Query: 361 KQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 405
           KQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV
Sbjct: 361 KQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 404

[Close]

BLAST of Carg13494-RA vs. NCBI nr
Match: XP_022959734.1 (tubby-like protein 8 isoform X1 [Cucurbita moschata])

HSP 1 Score: 813.5 bits (2100), Expect = 3.1e-232
Identity = 403/405 (99.51%), Postives = 403/405 (99.51%), Query Frame = 0


Query: 1   MSGDKKTIIQRQTSYNPLYVNPLTDLRHNRSCSDGGFRQGKENLTPNTKEKQSDENGVLC 60
           MSGDKKTIIQRQTSYNPLYVNPLTDLRHNRSCSDGGFRQGKENLTPNTKEKQSDENGVLC
Sbjct: 1   MSGDKKTIIQRQTSYNPLYVNPLTDLRHNRSCSDGGFRQGKENLTPNTKEKQSDENGVLC 60

Query: 61  DKENANPSNGSCANPKKFGDFKSFSTGKALKPSSLHLCMQMNEPDKIFGSRLWEGTDSEH 120
           DKENANPSNGSCANPKKFGDFKSFSTGKALKPSSLHLCMQMNEPDKIFGSRLWEGTDSEH
Sbjct: 61  DKENANPSNGSCANPKKFGDFKSFSTGKALKPSSLHLCMQMNEPDKIFGSRLWEGTDSEH 120

Query: 121 SSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLRGGAFYS 180
           SSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLRGGAFYS
Sbjct: 121 SSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLRGGAFYS 180

Query: 181 LYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKYHI 240
           LYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKYHI
Sbjct: 181 LYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKYHI 240

Query: 241 WDQASRLKPIPSQSKSLLAAVTFMPTITTWTGSHRSMKAFIPKHQTIQLKNTN-QVQHIA 300
           WDQASRLKPI SQSKSLLAAVTFMPTITTWTGSHRSMKAFIPKHQTIQLKNTN QVQHIA
Sbjct: 241 WDQASRLKPILSQSKSLLAAVTFMPTITTWTGSHRSMKAFIPKHQTIQLKNTNQQVQHIA 300

Query: 301 GLPREWEEEKTKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEEN 360
           GLPREWEEEKTKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEEN
Sbjct: 301 GLPREWEEEKTKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEEN 360

Query: 361 GKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 405
           GKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV
Sbjct: 361 GKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 405

[Close]

BLAST of Carg13494-RA vs. NCBI nr
Match: XP_023004740.1 (tubby-like protein 8 isoform X2 [Cucurbita maxima])

HSP 1 Score: 812.8 bits (2098), Expect = 5.4e-232
Identity = 399/404 (98.76%), Postives = 401/404 (99.26%), Query Frame = 0


Query: 1   MSGDKKTIIQRQTSYNPLYVNPLTDLRHNRSCSDGGFRQGKENLTPNTKEKQSDENGVLC 60
           MSGDKKTII RQTSYNPLYVNPLTDLRHNRSCSDGGFRQ KENLTPNTKEKQSDENGVLC
Sbjct: 1   MSGDKKTIIHRQTSYNPLYVNPLTDLRHNRSCSDGGFRQSKENLTPNTKEKQSDENGVLC 60

Query: 61  DKENANPSNGSCANPKKFGDFKSFSTGKALKPSSLHLCMQMNEPDKIFGSRLWEGTDSEH 120
           DKENANPSNGSCANPKKFGDFKSFSTGKALKPSSLHLCMQMNEPDKIFGS+LWEGTDSEH
Sbjct: 61  DKENANPSNGSCANPKKFGDFKSFSTGKALKPSSLHLCMQMNEPDKIFGSKLWEGTDSEH 120

Query: 121 SSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLRGGAFYS 180
           SSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLRGGAFYS
Sbjct: 121 SSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLRGGAFYS 180

Query: 181 LYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKYHI 240
           LYTNEGKGRQDRKLAVARHRR+NGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKYHI
Sbjct: 181 LYTNEGKGRQDRKLAVARHRRQNGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKYHI 240

Query: 241 WDQASRLKPIPSQSKSLLAAVTFMPTITTWTGSHRSMKAFIPKHQTIQLKNTNQVQHIAG 300
           WDQASRLKPIPSQSKSLLAAVTFMPTITTWTGSHRSMKAFIPKHQTIQLKNTNQVQHIAG
Sbjct: 241 WDQASRLKPIPSQSKSLLAAVTFMPTITTWTGSHRSMKAFIPKHQTIQLKNTNQVQHIAG 300

Query: 301 LPREWEEEKTKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEENG 360
           LPREWEEEKTKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGL IQTSVKNFQLTLEENG
Sbjct: 301 LPREWEEEKTKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGLTIQTSVKNFQLTLEENG 360

Query: 361 KQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 405
           KQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV
Sbjct: 361 KQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 404

[Close]

BLAST of Carg13494-RA vs. NCBI nr
Match: XP_023004738.1 (tubby-like protein 8 isoform X1 [Cucurbita maxima])

HSP 1 Score: 808.1 bits (2086), Expect = 1.3e-230
Identity = 399/405 (98.52%), Postives = 401/405 (99.01%), Query Frame = 0


Query: 1   MSGDKKTIIQRQTSYNPLYVNPLTDLRHNRSCSDGGFRQGKENLTPNTKEKQSDENGVLC 60
           MSGDKKTII RQTSYNPLYVNPLTDLRHNRSCSDGGFRQ KENLTPNTKEKQSDENGVLC
Sbjct: 1   MSGDKKTIIHRQTSYNPLYVNPLTDLRHNRSCSDGGFRQSKENLTPNTKEKQSDENGVLC 60

Query: 61  DKENANPSNGSCANPKKFGDFKSFSTGKALKPSSLHLCMQMNEPDKIFGSRLWEGTDSEH 120
           DKENANPSNGSCANPKKFGDFKSFSTGKALKPSSLHLCMQMNEPDKIFGS+LWEGTDSEH
Sbjct: 61  DKENANPSNGSCANPKKFGDFKSFSTGKALKPSSLHLCMQMNEPDKIFGSKLWEGTDSEH 120

Query: 121 SSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLRGGAFYS 180
           SSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLRGGAFYS
Sbjct: 121 SSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLRGGAFYS 180

Query: 181 LYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKYHI 240
           LYTNEGKGRQDRKLAVARHRR+NGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKYHI
Sbjct: 181 LYTNEGKGRQDRKLAVARHRRQNGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKYHI 240

Query: 241 WDQASRLKPIPSQSKSLLAAVTFMPTITTWTGSHRSMKAFIPKHQTIQLKNTN-QVQHIA 300
           WDQASRLKPIPSQSKSLLAAVTFMPTITTWTGSHRSMKAFIPKHQTIQLKNTN QVQHIA
Sbjct: 241 WDQASRLKPIPSQSKSLLAAVTFMPTITTWTGSHRSMKAFIPKHQTIQLKNTNQQVQHIA 300

Query: 301 GLPREWEEEKTKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEEN 360
           GLPREWEEEKTKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGL IQTSVKNFQLTLEEN
Sbjct: 301 GLPREWEEEKTKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGLTIQTSVKNFQLTLEEN 360

Query: 361 GKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 405
           GKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV
Sbjct: 361 GKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 405

[Close]

BLAST of Carg13494-RA vs. TAIR10
Match: AT1G16070.2 (tubby like protein 8)

HSP 1 Score: 434.9 bits (1117), Expect = 5.5e-122
Identity = 223/371 (60.11%), Postives = 282/371 (76.01%), Query Frame = 0


Query: 39  QGKENLTPNTKEKQSDENGVLCDKENANPSNGSCANPKKFGDFKSFSTG--KALKPSSLH 98
           + KEN++P  K   S E   L     +    G+   P +  +FKSFSTG   ALK SSL 
Sbjct: 31  EDKENVSPE-KVSTSVETRKLDRALKSQSMKGNSGFPTEVTNFKSFSTGGRTALKQSSLQ 90

Query: 99  LCMQMN-EPDK-IFGSRLWEGTDSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLP 158
            CMQ N E DK  FG + W   DSEHSSSLK+W+FSDSEAAPASSWSTLPNR+LLC+ LP
Sbjct: 91  ACMQKNSEVDKSSFGMKTWTSVDSEHSSSLKVWEFSDSEAAPASSWSTLPNRALLCKTLP 150

Query: 159 VDVGRCTCVIVKEKSPDGLRGGAFYSLYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSA 218
           +DVGRCTC+IVKE+SP+GL  G+ YSLYT+EG+GR+DRKLAVA H RRNG+S +++AQ+ 
Sbjct: 151 LDVGRCTCLIVKEQSPEGLSHGSVYSLYTHEGRGRKDRKLAVAYHSRRNGKSIFRVAQNV 210

Query: 219 RGILCNADDSFVGSMTTNLVGSKYHIWDQASRLKPIPSQSKSLLAAVTFMPTITTWTGSH 278
           +G+LC++D+S+VGSMT NL+GSKY+IWD+  R+  +    K LL+ V F PTITTWTGS+
Sbjct: 211 KGLLCSSDESYVGSMTANLLGSKYYIWDKGVRVGSVGKMVKPLLSVVIFTPTITTWTGSY 270

Query: 279 RSMKAFIPKHQTIQLKNTNQVQHIAGLPREWEEEKTKVHQLVSRVPQYNKISKQYELDFR 338
           R M+  +PK Q +Q  N  QVQ  + LP +W E K K+ +L SR+P YNKISKQ+ELDFR
Sbjct: 271 RRMRTLLPKQQPMQKNNNKQVQQASKLPLDWLENKEKIQKLCSRIPHYNKISKQHELDFR 330

Query: 339 DRGRAVSGLMIQTSVKNFQLTL-EENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICL 398
           DRGR  +GL IQ+SVKNFQLTL +E  +QTILQ+GR+ K++YV+D+RYP +GYQAFCICL
Sbjct: 331 DRGR--TGLRIQSSVKNFQLTLTQETPRQTILQMGRVDKARYVIDFRYPFSGYQAFCICL 390

Query: 399 ASIDSKLCCSV 405
           ASIDSKLCC+V
Sbjct: 391 ASIDSKLCCTV 398

[Close]

BLAST of Carg13494-RA vs. TAIR10
Match: AT2G18280.1 (tubby like protein 2)

HSP 1 Score: 66.2 bits (160), Expect = 5.1e-11
Identity = 37/97 (38.14%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 315 LVSRVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLE---------ENGKQTIL 374
           L ++ P++++  + + L+F+       G +   SVKNFQL  E         E  ++ IL
Sbjct: 303 LKNKSPRWHEQLQCWCLNFK-------GRVTVASVKNFQLVAEIDASLDAPPEEHERVIL 362

Query: 375 QLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCC 403
           Q G+IGK  + MDYRYPL+ +QAF IC++S D+K  C
Sbjct: 363 QFGKIGKDIFTMDYRYPLSAFQAFAICISSFDTKPAC 392

[Close]

BLAST of Carg13494-RA vs. TAIR10
Match: AT2G47900.3 (tubby like protein 3)

HSP 1 Score: 65.9 bits (159), Expect = 6.7e-11
Identity = 36/95 (37.89%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 315 LVSRVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQL-TLEENG------KQTILQL 374
           L ++ P++++  + + L+F       +G +   SVKNFQL    ENG      +  ILQ 
Sbjct: 319 LKNKAPRWHEQLQCWCLNF-------NGRVTVASVKNFQLVAAPENGPAGPEHENVILQF 378

Query: 375 GRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCC 403
           G++GK  + MDY+YP++ +QAF ICL+S D+K+ C
Sbjct: 379 GKVGKDVFTMDYQYPISAFQAFTICLSSFDTKIAC 406

[Close]

BLAST of Carg13494-RA vs. TAIR10
Match: AT1G47270.1 (tubby like protein 6)

HSP 1 Score: 63.9 bits (154), Expect = 2.6e-10
Identity = 37/100 (37.00%), Postives = 56/100 (56.00%), Query Frame = 0


Query: 315 LVSRVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTL------------EENGKQ 374
           L ++ P++++  + + L+F+       G +   SVKNFQL              EE   +
Sbjct: 320 LKNKSPRWHEQLQCWCLNFK-------GRVTVASVKNFQLVAAAAEAGKNMNIPEEEQDR 379

Query: 375 TILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCC 403
            ILQ G+IGK  + MDYRYP++ +QAF ICL+S D+K  C
Sbjct: 380 VILQFGKIGKDIFTMDYRYPISAFQAFAICLSSFDTKPVC 412

[Close]

BLAST of Carg13494-RA vs. TAIR10
Match: AT1G25280.1 (tubby like protein 10)

HSP 1 Score: 62.8 bits (151), Expect = 5.7e-10
Identity = 40/125 (32.00%), Postives = 63/125 (50.40%), Query Frame = 0


Query: 300 GLPREWEEEKTKVHQLV--SRVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLE 359
           G+  +  EE+     L+  ++ P++++  + + L+FR       G +   SVKNFQL   
Sbjct: 327 GISCDDNEEEASFRPLILKNKQPRWHEQLQCWCLNFR-------GRVTVASVKNFQLVAA 386

Query: 360 ENGK--------------------QTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASID 403
              +                    + ILQ G++GK  + MDYRYPL+ +QAF ICL+S D
Sbjct: 387 RQPQPQGTGAAAAPTSAPAHPEQDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFD 444

[Close]

BLAST of Carg13494-RA vs. Swiss-Prot
Match: sp|Q9S9M8|TLP8_ARATH (Tubby-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=TULP8 PE=2 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 9.0e-122
Identity = 223/370 (60.27%), Postives = 281/370 (75.95%), Query Frame = 0


Query: 39  QGKENLTPNTKEKQSDENGVLCDKENANPSNGSCANPKKFGDFKSFSTG--KALKPSSLH 98
           + KEN++P  K   S E   L     +    G+   P +  +FKSFSTG   ALK SSL 
Sbjct: 31  EDKENVSPE-KVSTSVETRKLDRALKSQSMKGNSGFPTEVTNFKSFSTGGRTALKQSSLQ 90

Query: 99  LCMQMN-EPDK-IFGSRLWEGTDSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLP 158
            CMQ N E DK  FG + W   DSEHSSSLK+W+FSDSEAAPASSWSTLPNR+LLC+ LP
Sbjct: 91  ACMQKNSEVDKSSFGMKTWTSVDSEHSSSLKVWEFSDSEAAPASSWSTLPNRALLCKTLP 150

Query: 159 VDVGRCTCVIVKEKSPDGLRGGAFYSLYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSA 218
           +DVGRCTC+IVKE+SP+GL  G+ YSLYT+EG+GR+DRKLAVA H RRNG+S +++AQ+ 
Sbjct: 151 LDVGRCTCLIVKEQSPEGLSHGSVYSLYTHEGRGRKDRKLAVAYHSRRNGKSIFRVAQNV 210

Query: 219 RGILCNADDSFVGSMTTNLVGSKYHIWDQASRLKPIPSQSKSLLAAVTFMPTITTWTGSH 278
           +G+LC++D+S+VGSMT NL+GSKY+IWD+  R+  +    K LL+ V F PTITTWTGS+
Sbjct: 211 KGLLCSSDESYVGSMTANLLGSKYYIWDKGVRVGSVGKMVKPLLSVVIFTPTITTWTGSY 270

Query: 279 RSMKAFIPKHQTIQLKNTNQVQHIAGLPREWEEEKTKVHQLVSRVPQYNKISKQYELDFR 338
           R M+  +PK Q +Q  N  QVQ  + LP +W E K K+ +L SR+P YNKISKQ+ELDFR
Sbjct: 271 RRMRTLLPKQQPMQKNNNKQVQQASKLPLDWLENKEKIQKLCSRIPHYNKISKQHELDFR 330

Query: 339 DRGRAVSGLMIQTSVKNFQLTLEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLA 398
           DRGR  +GL IQ+SVKNFQLTL E  +QTILQ+GR+ K++YV+D+RYP +GYQAFCICLA
Sbjct: 331 DRGR--TGLRIQSSVKNFQLTLTETPRQTILQMGRVDKARYVIDFRYPFSGYQAFCICLA 390

Query: 399 SIDSKLCCSV 405
           SIDSKLCC+V
Sbjct: 391 SIDSKLCCTV 397

[Close]

BLAST of Carg13494-RA vs. Swiss-Prot
Match: sp|Q6ETL2|TLP4_ORYSJ (Tubby-like protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=TULP4 PE=3 SV=2)

HSP 1 Score: 389.0 bits (998), Expect = 6.3e-107
Identity = 189/283 (66.78%), Postives = 233/283 (82.33%), Query Frame = 0


Query: 127 WDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKE---KSPDGLRGGAFYSLYT 186
           WD SD+EAAPASSW+TLPNR+LLCRPLP+DVGRCTC+I KE    +  G RG A YSLYT
Sbjct: 138 WDLSDNEAAPASSWATLPNRALLCRPLPLDVGRCTCIIAKETLAAAAAGARGVALYSLYT 197

Query: 187 NEGKGRQDRKLAVARHRRRNGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKYHIWDQ 246
           NEG+GRQDRKLAVARHRRR GRSE+ +AQ+  GI C +D +F+G++++NLVGS+Y IW Q
Sbjct: 198 NEGQGRQDRKLAVARHRRRRGRSEFVVAQNLDGIFCTSDKNFLGTLSSNLVGSRYRIWGQ 257

Query: 247 ASRLKPIPSQSKSLLAAVTFMPTITTWTGSHRSMKAFIPKHQTIQLKNTN--QVQHIAGL 306
            +R+  I SQSK LL  V F PT+TT TGS RSM+A+IPK+Q+I LKN+N  Q+QHI+GL
Sbjct: 258 GNRVDEIKSQSKRLLGVVAFAPTVTTLTGSFRSMRAWIPKNQSIHLKNSNSAQIQHISGL 317

Query: 307 PREWEEEKTKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEENGK 366
           P++W+E+K K  QL SR P YN ++K+YELDFR+R   + G  +Q SVKNFQ+TLEE G+
Sbjct: 318 PKDWQEKKIKADQLCSRSPFYNNMTKRYELDFRERAGRM-GYKVQPSVKNFQMTLEEKGR 377

Query: 367 QTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 405
           QTILQLGRIGKSKY+MD+RYPLTGYQA CICLASIDSKLCC++
Sbjct: 378 QTILQLGRIGKSKYIMDFRYPLTGYQALCICLASIDSKLCCTL 419

[Close]

BLAST of Carg13494-RA vs. Swiss-Prot
Match: sp|P50607|TUB_HUMAN (Tubby protein homolog OS=Homo sapiens OX=9606 GN=TUB PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.9e-19
Identity = 76/267 (28.46%), Postives = 132/267 (49.44%), Query Frame = 0


Query: 151 RPLPVDVGRCTCVIVKEKSPDGLRGGAF--YSLYTNEGKGRQDRKLAVARHRRRNGRSEY 210
           RP P  +    C I ++K   G+  G +  Y L+ +   G++   LA  R R+++  S Y
Sbjct: 257 RPAPQGI-TIKCRITRDKK--GMDRGMYPTYFLHLDREDGKKVFLLA-GRKRKKSKTSNY 316

Query: 211 KIAQSARGILCNADDSFVGSMTTNLVGSKYHIWDQASRLKPIPSQSKSL--------LAA 270
            I+      L    DS++G + +NL+G+K+ ++D    + P  + S +L        LAA
Sbjct: 317 LISVDPTD-LSRGGDSYIGKLRSNLMGTKFTVYDNG--VNPQKASSSTLESGTLRQELAA 376

Query: 271 VTFMPTITTWTGSHRSMKAFIP----KHQTIQLKNTNQVQHIAGLPREWEEEKTK-VHQL 330
           V +   +  + G  R M   +P     H+ + ++  N+ + +      W+ + T+ + +L
Sbjct: 377 VCYETNVLGFKGP-RKMSVIVPGMNMVHERVSIRPRNEHETLLA---RWQNKNTESIIEL 436

Query: 331 VSRVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEENGKQTILQLGRIGKSKY 390
            ++ P +N  ++ Y L+F        G + Q SVKNFQ+    +    ++Q GR+ +  +
Sbjct: 437 QNKTPVWNDDTQSYVLNFH-------GRVTQASVKNFQIIHGNDPDYIVMQFGRVAEDVF 496

Query: 391 VMDYRYPLTGYQAFCICLASIDSKLCC 403
            MDY YPL   QAF I L+S DSKL C
Sbjct: 497 TMDYNYPLCALQAFAIALSSFDSKLAC 505

[Close]

BLAST of Carg13494-RA vs. Swiss-Prot
Match: sp|P50586|TUB_MOUSE (Tubby protein OS=Mus musculus OX=10090 GN=Tub PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.1e-18
Identity = 76/267 (28.46%), Postives = 132/267 (49.44%), Query Frame = 0


Query: 151 RPLPVDVGRCTCVIVKEKSPDGLRGGAF--YSLYTNEGKGRQDRKLAVARHRRRNGRSEY 210
           RP P  +    C I ++K   G+  G +  Y L+ +   G++   LA  R R+++  S Y
Sbjct: 256 RPAPQGI-TIKCRITRDKK--GMDRGMYPTYFLHLDREDGKKVFLLA-GRKRKKSKTSNY 315

Query: 211 KIAQSARGILCNADDSFVGSMTTNLVGSKYHIWDQASRLKPIPSQSKSL--------LAA 270
            I+      L    DS++G + +NL+G+K+ ++D    + P  + S +L        LAA
Sbjct: 316 LISVDPTD-LSRGGDSYIGKLRSNLMGTKFTVYDNG--VNPQKASSSTLESGTLRQELAA 375

Query: 271 VTFMPTITTWTGSHRSMKAFIP----KHQTIQLKNTNQVQHIAGLPREWEEEKTK-VHQL 330
           V +   +  + G  R M   +P     H+ + ++  N+ + +      W+ + T+ + +L
Sbjct: 376 VCYETNVLGFKGP-RKMSVIVPGMNMVHERVCIRPRNEHETLLA---RWQNKNTESIIEL 435

Query: 331 VSRVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEENGKQTILQLGRIGKSKY 390
            ++ P +N  ++ Y L+F        G + Q SVKNFQ+    +    ++Q GR+ +  +
Sbjct: 436 QNKTPVWNDDTQSYVLNFH-------GRVTQASVKNFQIIHGNDPDYIVMQFGRVAEDVF 495

Query: 391 VMDYRYPLTGYQAFCICLASIDSKLCC 403
            MDY YPL   QAF I L+S DSKL C
Sbjct: 496 TMDYNYPLCALQAFAIALSSFDSKLAC 504

[Close]

BLAST of Carg13494-RA vs. Swiss-Prot
Match: sp|O88808|TUB_RAT (Tubby protein homolog OS=Rattus norvegicus OX=10116 GN=Tub PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.1e-18
Identity = 76/267 (28.46%), Postives = 132/267 (49.44%), Query Frame = 0


Query: 151 RPLPVDVGRCTCVIVKEKSPDGLRGGAF--YSLYTNEGKGRQDRKLAVARHRRRNGRSEY 210
           RP P  +    C I ++K   G+  G +  Y L+ +   G++   LA  R R+++  S Y
Sbjct: 256 RPAPQGI-TIKCRITRDKK--GMDRGMYPTYFLHLDREDGKKVFLLA-GRKRKKSKTSNY 315

Query: 211 KIAQSARGILCNADDSFVGSMTTNLVGSKYHIWDQASRLKPIPSQSKSL--------LAA 270
            I+      L    DS++G + +NL+G+K+ ++D    + P  + S +L        LAA
Sbjct: 316 LISVDPTD-LSRGGDSYIGKLRSNLMGTKFTVYDNG--VNPQKASSSTLESGTLRQELAA 375

Query: 271 VTFMPTITTWTGSHRSMKAFIP----KHQTIQLKNTNQVQHIAGLPREWEEEKTK-VHQL 330
           V +   +  + G  R M   +P     H+ + ++  N+ + +      W+ + T+ + +L
Sbjct: 376 VCYETNVLGFKGP-RKMSVIVPGMNMVHERVCIRPRNEHETLLA---RWQNKNTESIIEL 435

Query: 331 VSRVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEENGKQTILQLGRIGKSKY 390
            ++ P +N  ++ Y L+F        G + Q SVKNFQ+    +    ++Q GR+ +  +
Sbjct: 436 QNKTPVWNDDTQSYVLNFH-------GRVTQASVKNFQIIHGNDPDYIVMQFGRVAEDVF 495

Query: 391 VMDYRYPLTGYQAFCICLASIDSKLCC 403
            MDY YPL   QAF I L+S DSKL C
Sbjct: 496 TMDYNYPLCALQAFAIALSSFDSKLAC 504

[Close]

BLAST of Carg13494-RA vs. TrEMBL
Match: tr|A0A0A0KBM7|A0A0A0KBM7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G431340 PE=3 SV=1)

HSP 1 Score: 723.0 bits (1865), Expect = 3.7e-205
Identity = 364/409 (89.00%), Postives = 379/409 (92.67%), Query Frame = 0


Query: 1   MSGDKKTIIQRQTSYNPLYVNPLTDLRHNRSCSD-GGFRQGKENLTPNTKEKQSDE--NG 60
           M GDKK+II RQ+SYN LY+NPLTDLRHNRSCSD GGFRQGKENLTPNTK+KQ DE    
Sbjct: 1   MIGDKKSIIPRQSSYNSLYLNPLTDLRHNRSCSDGGGFRQGKENLTPNTKDKQRDEPAPA 60

Query: 61  VLCDKENANPSNGSCANPK-KFGDFKSFSTGKALKPSSLHLCMQMNEPDKIFGSRLWEGT 120
           VLCDKEN  P+NG CAN K +FGDFKSFS GKALKPSSLHLCMQMNEPDK+F SRLW+GT
Sbjct: 61  VLCDKENVIPANGFCANSKQQFGDFKSFSNGKALKPSSLHLCMQMNEPDKVFASRLWDGT 120

Query: 121 DSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLRGG 180
           DSEHSSSLKI      EAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGL GG
Sbjct: 121 DSEHSSSLKIXXXXXXEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLHGG 180

Query: 181 AFYSLYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSARGILCNADDSFVGSMTTNLVGS 240
           AFYSLYTNEGKGRQDRKLAVARH RR GRSEYKIAQSARGILCNADDSFVGSMTTNLVGS
Sbjct: 181 AFYSLYTNEGKGRQDRKLAVARHGRRKGRSEYKIAQSARGILCNADDSFVGSMTTNLVGS 240

Query: 241 KYHIWDQASRLKPIPSQSKSLLAAVTFMPTITTWTGSHRSMKAFIPKHQTIQLKNTN-QV 300
           KY+IWDQ SRLKPIP+QS+SLL AVTF PTITTWTGSHRSMKAFIPKHQ++QLKNTN QV
Sbjct: 241 KYYIWDQGSRLKPIPTQSRSLLGAVTFTPTITTWTGSHRSMKAFIPKHQSMQLKNTNQQV 300

Query: 301 QHIAGLPREWEEEKTKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLT 360
           QHIAGLPREWEEEK KVHQLVS+VPQYNKISKQYELDFRDRGRAVSGL+IQTSVKNFQLT
Sbjct: 301 QHIAGLPREWEEEKAKVHQLVSKVPQYNKISKQYELDFRDRGRAVSGLVIQTSVKNFQLT 360

Query: 361 LEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 405
           LEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV
Sbjct: 361 LEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 409

[Close]

BLAST of Carg13494-RA vs. TrEMBL
Match: tr|A0A1S3CEL2|A0A1S3CEL2_CUCME (tubby-like protein 8 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499857 PE=3 SV=1)

HSP 1 Score: 714.5 bits (1843), Expect = 1.3e-202
Identity = 356/406 (87.68%), Postives = 372/406 (91.63%), Query Frame = 0


Query: 1   MSGDKKTIIQRQTSYNPLYVNPLTDLRHNRSCSD-GGFRQGKENLTPNTKEKQSDENGVL 60
           M GDKK+II RQ+SYN LY+NPLTDL HNRSCSD GGF+QGKENLTPNTK+KQ DE+ VL
Sbjct: 1   MIGDKKSIIPRQSSYNSLYLNPLTDLSHNRSCSDGGGFKQGKENLTPNTKDKQRDESAVL 60

Query: 61  CDKENANPSNGSCANPK-KFGDFKSFSTGKALKPSSLHLCMQMNEPDKIFGSRLWEGTDS 120
           CDKENA P NG CAN K +FGD KSFSTGKALKPSSLHLCMQMNEPDK+F +RLW+GTDS
Sbjct: 61  CDKENAIPINGFCANSKQQFGDLKSFSTGKALKPSSLHLCMQMNEPDKVFATRLWDGTDS 120

Query: 121 EHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLRGGAF 180
           EHSSSLK        AAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGL GGAF
Sbjct: 121 EHSSSLKXXXXXXXXAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLHGGAF 180

Query: 181 YSLYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKY 240
           YSLYTNEGKGRQDRKLAVARHRRR GRSEYKIAQS RG+LCNADDSFVGSMTTNLVGSKY
Sbjct: 181 YSLYTNEGKGRQDRKLAVARHRRRKGRSEYKIAQSTRGVLCNADDSFVGSMTTNLVGSKY 240

Query: 241 HIWDQASRLKPIPSQSKSLLAAVTFMPTITTWTGSHRSMKAFIPKHQTIQLKNTNQVQHI 300
           HIWDQ +RLKP     +SLL AVTFMPTITTWTGSHR MKAFIPKHQ++QLKNTNQVQHI
Sbjct: 241 HIWDQGNRLKP-----RSLLGAVTFMPTITTWTGSHRCMKAFIPKHQSMQLKNTNQVQHI 300

Query: 301 AGLPREWEEEKTKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEE 360
           AGLPREWEEEK KVHQLVS+VPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEE
Sbjct: 301 AGLPREWEEEKAKVHQLVSKVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEE 360

Query: 361 NGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 405
           NGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV
Sbjct: 361 NGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 401

[Close]

BLAST of Carg13494-RA vs. TrEMBL
Match: tr|A0A1S3CE68|A0A1S3CE68_CUCME (tubby-like protein 8 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499857 PE=3 SV=1)

HSP 1 Score: 709.9 bits (1831), Expect = 3.2e-201
Identity = 356/407 (87.47%), Postives = 372/407 (91.40%), Query Frame = 0


Query: 1   MSGDKKTIIQRQTSYNPLYVNPLTDLRHNRSCSD-GGFRQGKENLTPNTKEKQSDENGVL 60
           M GDKK+II RQ+SYN LY+NPLTDL HNRSCSD GGF+QGKENLTPNTK+KQ DE+ VL
Sbjct: 1   MIGDKKSIIPRQSSYNSLYLNPLTDLSHNRSCSDGGGFKQGKENLTPNTKDKQRDESAVL 60

Query: 61  CDKENANPSNGSCANPK-KFGDFKSFSTGKALKPSSLHLCMQMNEPDKIFGSRLWEGTDS 120
           CDKENA P NG CAN K +FGD KSFSTGKALKPSSLHLCMQMNEPDK+F +RLW+GTDS
Sbjct: 61  CDKENAIPINGFCANSKQQFGDLKSFSTGKALKPSSLHLCMQMNEPDKVFATRLWDGTDS 120

Query: 121 EHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLRGGAF 180
           EHSSSLK        AAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGL GGAF
Sbjct: 121 EHSSSLKXXXXXXXXAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLHGGAF 180

Query: 181 YSLYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKY 240
           YSLYTNEGKGRQDRKLAVARHRRR GRSEYKIAQS RG+LCNADDSFVGSMTTNLVGSKY
Sbjct: 181 YSLYTNEGKGRQDRKLAVARHRRRKGRSEYKIAQSTRGVLCNADDSFVGSMTTNLVGSKY 240

Query: 241 HIWDQASRLKPIPSQSKSLLAAVTFMPTITTWTGSHRSMKAFIPKHQTIQLKNTN-QVQH 300
           HIWDQ +RLKP     +SLL AVTFMPTITTWTGSHR MKAFIPKHQ++QLKNTN QVQH
Sbjct: 241 HIWDQGNRLKP-----RSLLGAVTFMPTITTWTGSHRCMKAFIPKHQSMQLKNTNQQVQH 300

Query: 301 IAGLPREWEEEKTKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLE 360
           IAGLPREWEEEK KVHQLVS+VPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLE
Sbjct: 301 IAGLPREWEEEKAKVHQLVSKVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLE 360

Query: 361 ENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 405
           ENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV
Sbjct: 361 ENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 402

[Close]

BLAST of Carg13494-RA vs. TrEMBL
Match: tr|A0A251PY91|A0A251PY91_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G104500 PE=3 SV=1)

HSP 1 Score: 538.9 bits (1387), Expect = 9.9e-150
Identity = 286/427 (66.98%), Postives = 330/427 (77.28%), Query Frame = 0


Query: 1   MSGDKK-TIIQRQTSYNPLYVNPLTDLRHNRSCSDGG---------------FRQGKENL 60
           MSG KK T+I RQ+SYN LYVNPLTD +HNRS S+G                    KEN 
Sbjct: 2   MSGCKKTTLIPRQSSYNSLYVNPLTDQKHNRSYSEGVSLNTKNHNLEPNPSILNHNKENA 61

Query: 61  TPNTKEKQSDENGVLCDKEN--ANPSNGSCANPKKFGDFKSFSTG-KALKPSSLHLCMQM 120
            P  +E+ + +N    DKEN  A  +  S   P K  + KS STG +ALKPSSL  CMQM
Sbjct: 62  MPYKQEQAALDN----DKENLVAQENGSSFLMPLKQKNLKSLSTGCRALKPSSLQFCMQM 121

Query: 121 NEPDKIF--GSRLWE--GTDSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDV 180
           NEPDK+   GS +W+     SE+SSSLKIWD+SDSEAAPASSWSTLPN+SLLCRPLP+DV
Sbjct: 122 NEPDKVLFGGSTIWDPPSNGSENSSSLKIWDYSDSEAAPASSWSTLPNKSLLCRPLPMDV 181

Query: 181 GRCTCVIVKEKSPDGLRGGAFYSLYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSARGI 240
           GRCTCVIVKE  P+GL GG  YSL+TNEGKGRQDRKLA+A H+RRNG+SE  IAQ+ +GI
Sbjct: 182 GRCTCVIVKEACPEGLDGGTLYSLHTNEGKGRQDRKLAIAHHKRRNGKSELTIAQNVKGI 241

Query: 241 LCNADDSFVGSMTTNLVGSKYHIWDQASRLKPIPSQSKSLLAAVTFMPTITTWTGSHRSM 300
           L ++DDSF+GS+  NL+GSKYHIWDQ S    +  QSKSLLA V+F PTI +WTGS+R +
Sbjct: 242 LSHSDDSFIGSVNANLMGSKYHIWDQGSCPNSLSRQSKSLLAVVSFTPTILSWTGSYRRL 301

Query: 301 KAFIPKHQTIQLKNTNQVQHIAGLPREWEEEKTKVHQLVSRVPQYNKISKQYELDFRDRG 360
           +A I KHQ++QLKNT QVQHI GLP+EWEE+  KVHQL SRVP YN ISK+YELDFRDRG
Sbjct: 302 RACIAKHQSMQLKNTTQVQHIKGLPKEWEEKLDKVHQLCSRVPNYNTISKRYELDFRDRG 361

Query: 361 RAVSGLMIQTSVKNFQLTLEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASID 405
           RA  GL IQ+SVKNFQLTLEENGKQTILQLGR+GKSKYVMDYRYPLTGYQAFCICLASID
Sbjct: 362 RA--GLRIQSSVKNFQLTLEENGKQTILQLGRVGKSKYVMDYRYPLTGYQAFCICLASID 421

[Close]

BLAST of Carg13494-RA vs. TrEMBL
Match: tr|A0A2R6PSD2|A0A2R6PSD2_ACTCH (Tubby-like protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc22129 PE=3 SV=1)

HSP 1 Score: 535.0 bits (1377), Expect = 1.4e-148
Identity = 266/406 (65.52%), Postives = 318/406 (78.33%), Query Frame = 0


Query: 1   MSGDKKTIIQRQTSYNPLYVNPLTDLRHNRSCSDGGFRQGKENLTPNTKEKQSDENGVLC 60
           MS  +K  I RQ+SYN LY+NPLT+L+H RSCS+G     KEN TPN  +        + 
Sbjct: 1   MSAFQKCSIPRQSSYNSLYLNPLTELKHYRSCSEGTLSDEKENFTPNKAKIP------IH 60

Query: 61  DKENANPSNGSCANPKKFGDFKSFSTGKALKPSSLHLCMQMNEPDKIF-GSRLWEGTDSE 120
            KEN  P+NG CA  K     K++   +ALKPSSL LCMQMNEPD  F GS++W+  +S+
Sbjct: 61  GKENEEPNNGFCAAAKPIPTGKAYLRDRALKPSSLQLCMQMNEPDLAFRGSKIWDPIESD 120

Query: 121 HSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLRGGAFY 180
             SS  +WD+SDSEAAPASSWSTLPNRSLLCRPLPVD+GRCTCVIVKE SP+GL GG  Y
Sbjct: 121 SKSSGNVWDYSDSEAAPASSWSTLPNRSLLCRPLPVDIGRCTCVIVKEASPEGLDGGTIY 180

Query: 181 SLYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKYH 240
           SLYTNEGKGRQDRK+AVA HRR +GRSE+ +AQ+ +GI C++DDSF+G +T NL+GSKYH
Sbjct: 181 SLYTNEGKGRQDRKIAVAHHRRHSGRSEFVVAQNMKGICCSSDDSFIGIVTANLMGSKYH 240

Query: 241 IWDQASRLKPIPSQSKSLLAAVTFMPTITTWTGSHRSMKAFIPKHQTIQLKNTN-QVQHI 300
           IWDQ S+L     QSKS LA V+FMPT+ TWTGS+RSMK + PKHQ++QLK+T  Q+QH 
Sbjct: 241 IWDQGSQLNSQSKQSKSPLAVVSFMPTLATWTGSYRSMKVWAPKHQSMQLKSTTAQIQHT 300

Query: 301 AGLPREWEEEKTKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEE 360
           A LP++WE +  KVHQL SR P YN  SKQYELDFRDR R  SGL IQ+SVKNFQL LE+
Sbjct: 301 ARLPKDWEAKMDKVHQLFSRTPHYNNTSKQYELDFRDRTR--SGLKIQSSVKNFQLILEK 360

Query: 361 NGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 405
           NG+QTILQLGR+GK+KYVMDYRYPLTG+ AFCICLASIDSKLCC++
Sbjct: 361 NGRQTILQLGRVGKAKYVMDYRYPLTGFHAFCICLASIDSKLCCTL 398

The following BLAST results are available for this feature:

BLAST of Carg13494-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959736.1	1.3e-233	99.75	tubby-like protein 8 isoform X2 [Cucurbita moschata]	[more]
XP_023513542.1	1.4e-232	99.01	tubby-like protein 8 [Cucurbita pepo subsp. pepo]	[more]
XP_022959734.1	3.1e-232	99.51	tubby-like protein 8 isoform X1 [Cucurbita moschata]	[more]
XP_023004740.1	5.4e-232	98.76	tubby-like protein 8 isoform X2 [Cucurbita maxima]	[more]
XP_023004738.1	1.3e-230	98.52	tubby-like protein 8 isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg13494-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G16070.2	5.5e-122	60.11	tubby like protein 8	[more]
AT2G18280.1	5.1e-11	38.14	tubby like protein 2	[more]
AT2G47900.3	6.7e-11	37.89	tubby like protein 3	[more]
AT1G47270.1	2.6e-10	37.00	tubby like protein 6	[more]
AT1G25280.1	5.7e-10	32.00	tubby like protein 10	[more]

BLAST of Carg13494-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9S9M8\|TLP8_ARATH	9.0e-122	60.27	Tubby-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=TULP8 PE=2 SV=1	[more]
sp\|Q6ETL2\|TLP4_ORYSJ	6.3e-107	66.78	Tubby-like protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=TULP4 PE=3 SV=2	[more]
sp\|P50607\|TUB_HUMAN	4.9e-19	28.46	Tubby protein homolog OS=Homo sapiens OX=9606 GN=TUB PE=1 SV=1	[more]
sp\|P50586\|TUB_MOUSE	1.1e-18	28.46	Tubby protein OS=Mus musculus OX=10090 GN=Tub PE=1 SV=1	[more]
sp\|O88808\|TUB_RAT	1.1e-18	28.46	Tubby protein homolog OS=Rattus norvegicus OX=10116 GN=Tub PE=2 SV=1	[more]

BLAST of Carg13494-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KBM7\|A0A0A0KBM7_CUCSA	3.7e-205	89.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G431340 PE=3 SV=1	[more]
tr\|A0A1S3CEL2\|A0A1S3CEL2_CUCME	1.3e-202	87.68	tubby-like protein 8 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499857 PE=3 SV=...	[more]
tr\|A0A1S3CE68\|A0A1S3CE68_CUCME	3.2e-201	87.47	tubby-like protein 8 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499857 PE=3 SV=...	[more]
tr\|A0A251PY91\|A0A251PY91_PRUPE	9.9e-150	66.98	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G104500 PE=3 SV=1	[more]
tr\|A0A2R6PSD2\|A0A2R6PSD2_ACTCH	1.4e-148	65.52	Tubby-like protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR025659	Tubby-like_C
IPR000007	Tubby_C

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg13494	Carg13494	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13494-RA.CDS.9	Carg13494-RA.CDS.9	CDS
Carg13494-RA.CDS.8	Carg13494-RA.CDS.8	CDS
Carg13494-RA.CDS.7	Carg13494-RA.CDS.7	CDS
Carg13494-RA.CDS.6	Carg13494-RA.CDS.6	CDS
Carg13494-RA.CDS.5	Carg13494-RA.CDS.5	CDS
Carg13494-RA.CDS.4	Carg13494-RA.CDS.4	CDS
Carg13494-RA.CDS.3	Carg13494-RA.CDS.3	CDS
Carg13494-RA.CDS.2	Carg13494-RA.CDS.2	CDS
Carg13494-RA.CDS.1	Carg13494-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13494-RA.five_prime_UTR.1	Carg13494-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13494-RA.exon.9	Carg13494-RA.exon.9	exon
Carg13494-RA.exon.8	Carg13494-RA.exon.8	exon
Carg13494-RA.exon.7	Carg13494-RA.exon.7	exon
Carg13494-RA.exon.6	Carg13494-RA.exon.6	exon
Carg13494-RA.exon.5	Carg13494-RA.exon.5	exon
Carg13494-RA.exon.4	Carg13494-RA.exon.4	exon
Carg13494-RA.exon.3	Carg13494-RA.exon.3	exon
Carg13494-RA.exon.2	Carg13494-RA.exon.2	exon
Carg13494-RA.exon.1	Carg13494-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg13494-RA	Carg13494-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000007	Tubby, C-terminal	PRINTS	PR01573	SUPERTUBBY	coord: 360..379 score: 35.45 coord: 381..403 score: 56.13 coord: 225..249 score: 22.55 coord: 340..356 score: 47.06
IPR000007	Tubby, C-terminal	PFAM	PF01167	Tub	coord: 152..398 e-value: 3.7E-51 score: 174.0
IPR025659	Tubby-like, C-terminal	GENE3D	G3DSA:3.20.90.10		coord: 142..403 e-value: 6.5E-54 score: 184.9
IPR025659	Tubby-like, C-terminal	SUPERFAMILY	SSF54518	Tubby C-terminal domain-like	coord: 137..402
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..58
None	No IPR available	PANTHER	PTHR16517:SF27	TUBBY-LIKE PROTEIN 8	coord: 1..404
None	No IPR available	PANTHER	PTHR16517	TUBBY-RELATED	coord: 1..404