Carg12946-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12946-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Early auxin response protein
Location	Cucurbita_argyrosperma_scaffold_052 : 248650 .. 250680 (-)
Sequence length	1642

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTATCAAAGTTGATCGAAAAGACGAGAGATTGAATACTTATATGAGGGGAAAAGACGTTGTAATAGGGAGACAAAGATGTGACCAACCCGAGAGAGAGAAAAAGAGAGTCGACTTTTTGGAACTTGAAACAGTGGCAGCTAGTAGTTTGGTTGTGGAATTTCTCACATTTCTCTTCACTATATAAAGTGTTTTGCACTCTCATCTTGCCTTGGTGAGGTATAGTTCTCTAGACCTTGCTCTATCTGGCCTTATCGATAAGAATTCGAACTCGAACTAGAGGCCTCGAAGGGGATAAAGAAGAGGGTGTATCGCTGTTGCAAACTCGACGTTTGACAGATGAGGGTAAGTTAATGCAAGAGTGTTTTGTCATGATTTTGTATTCGGAAGTTGGTGTTTACTCTCCGTGATTAATTACGACTCGTTTTTGTTTGCAGATATTGAGTTGGATGCAAGGGAAGAAGACTAATGGCAGAAAGGGGAGCGAAAGAACAACATCAAATTCAACCAAGGGTGAGGAAGACTATATTCTTCTTTTATTTTCGTTTCTATTTACAGAGTGAACTCGTTTTGATGATGATCTTTTAGACGATTTGAGTGCAAATAGCTTGAATTTCTTGCTCAAACAGGTGAGATGGTGCACAGAACTCTCCCTGAAGAATTCAGCAGCTGGCCTCATGTGTTGCTGGCGATTGGAACGTTCGGAGACGATAATCTGAATCAAGCACGCCCAAAACGGTCTCAGGAGAATCCATCATCTTCCCTGGAACAACATCTTCAAGATCTTACACCTGAAGAACTAAACATACTTCACAAAGAGTTCAATCTGTTATTGGATGAACACCTTGAGCAATCGGGTCCATCCTTGGAATTTGAAGTCAGCCAGCATTGTCCATCAAACATATTTCTTACTAGAAGCTTCGAATCCGAAACATCAAAGAACGAACTATTTTACGACGAGCTGATAAAGAAGAGCGATAGTTTCCAGCATGTCATACTCAGCAAAAGCAAAGATGCAGGTACGGGAGCTCACGACACTACAGTCATTGGCAAGAGAACTTTATCCTTCCTTCTCAAGAAGATTTTCGTCTGCGGAGGTGGTATCGCACCCGCTACAGTTGCTCCTCCTCCGAGAATCATAACTCTGGAGTCGAAAATGGAGAAGGTAAAATCAAGAACTCAAATTCTCTGATTACTGTTCTGGTGGGATCAGTGTTGATGACTTTTTGTAGTCAAATATTGATAAAACTGTTTCTGAATCAGATGTTGAGGACAATACTCCAAAAGAAGATATACCCTCAAAACTCCAATGTCAGAACATCATCTATGAAAAAGTACCTGAAGAGGAAAAACAAGCAAAAAGATGAAAACGAAAACGAAAACGAAAACGGAAAGAACGACAAGAAGTGCGATGGAAGTAAATGGGTCCAGACTGATTCTGAATGTCAGTATGAACAATATAATCAGTATCAACTTTCTAGTTCCATCAGGTACACAAAATTCTGACTGTTTGTTTCCATTTCTTGTGCAGATATTGTTTTAGAAATCTGAGAAGCTACCACTGCCAAAGGAAAGATCACAAGACATCACTTTCTTGCTTGGTTGCTTGATTGTTTGTTCAAATGTTTAGCTATTGTTCTTATCTAACAGCTTGGAGGAATTGAAACTGAGCTCAAATTTATCCTTTAAGAAACACTCTCGAATAGCTGGGGATGTTCGTCACAATTACAGCGTCTGTTATATAAACTCACTCAGAAAAGCAAAAGCTTTGTCTTAGAGAGCCGAATCATTGTCTTGTAGCATGAAATCAAGACCAGAGAAGCCCACAAGAACTGTGGAAATGACCAATATTCTTACACTTTAGCTCACAAAAAGAGAGAGGTAGGGTCATTTTCACTGGTTCGTTTTAAACTGGACACGTTTCTTTCTGTTACTCGATCATATTTTTTGGAGATGTGAGTTTGCGAACATTTGGCTCCATTTAAGTTTATCATCGGGATATCGGTGATATGATCGGAGAGTTCCTCCT

mRNA sequence

TTTTTTATCAAAGTTGATCGAAAAGACGAGAGATTGAATACTTATATGAGGGGAAAAGACGTTGTAATAGGGAGACAAAGATGTGACCAACCCGAGAGAGAGAAAAAGAGAGTCGACTTTTTGGAACTTGAAACAGTGGCAGCTAGTAGTTTGGTTGTGGAATTTCTCACATTTCTCTTCACTATATAAAGTGTTTTGCACTCTCATCTTGCCTTGGTGAGGTATAGTTCTCTAGACCTTGCTCTATCTGGCCTTATCGATAAGAATTCGAACTCGAACTAGAGGCCTCGAAGGGGATAAAGAAGAGGGTGTATCGCTGTTGCAAACTCGACGTTTGACAGATGAGGATATTGAGTTGGATGCAAGGGAAGAAGACTAATGGCAGAAAGGGGAGCGAAAGAACAACATCAAATTCAACCAAGGGTGAGATGGTGCACAGAACTCTCCCTGAAGAATTCAGCAGCTGGCCTCATGTGTTGCTGGCGATTGGAACGTTCGGAGACGATAATCTGAATCAAGCACGCCCAAAACGGTCTCAGGAGAATCCATCATCTTCCCTGGAACAACATCTTCAAGATCTTACACCTGAAGAACTAAACATACTTCACAAAGAGTTCAATCTGTTATTGGATGAACACCTTGAGCAATCGGGTCCATCCTTGGAATTTGAAGTCAGCCAGCATTGTCCATCAAACATATTTCTTACTAGAAGCTTCGAATCCGAAACATCAAAGAACGAACTATTTTACGACGAGCTGATAAAGAAGAGCGATAGTTTCCAGCATGTCATACTCAGCAAAAGCAAAGATGCAGGTACGGGAGCTCACGACACTACAGTCATTGGCAAGAGAACTTTATCCTTCCTTCTCAAGAAGATTTTCGTCTGCGGAGGTGGTATCGCACCCGCTACAGTTGCTCCTCCTCCGAGAATCATAACTCTGGAGTCGAAAATGGAGAAGATGTTGAGGACAATACTCCAAAAGAAGATATACCCTCAAAACTCCAATGTCAGAACATCATCTATGAAAAAGTACCTGAAGAGGAAAAACAAGCAAAAAGATGAAAACGAAAACGAAAACGAAAACGGAAAGAACGACAAGAAGTGCGATGGAAGTAAATGGGTCCAGACTGATTCTGAATGTCAATATTGTTTTAGAAATCTGAGAAGCTACCACTGCCAAAGGAAAGATCACAAGACATCACTTTCTTGCTTGGTTGCTTGATTGTTTGTTCAAATGTTTAGCTATTGTTCTTATCTAACAGCTTGGAGGAATTGAAACTGAGCTCAAATTTATCCTTTAAGAAACACTCTCGAATAGCTGGGGATGTTCGTCACAATTACAGCGTCTGTTATATAAACTCACTCAGAAAAGCAAAAGCTTTGTCTTAGAGAGCCGAATCATTGTCTTGTAGCATGAAATCAAGACCAGAGAAGCCCACAAGAACTGTGGAAATGACCAATATTCTTACACTTTAGCTCACAAAAAGAGAGAGGTAGGGTCATTTTCACTGGTTCGTTTTAAACTGGACACGTTTCTTTCTGTTACTCGATCATATTTTTTGGAGATGTGAGTTTGCGAACATTTGGCTCCATTTAAGTTTATCATCGGGATATCGGTGATATGATCGGAGAGTTCCTCCT

Coding sequence (CDS)

ATGAGGATATTGAGTTGGATGCAAGGGAAGAAGACTAATGGCAGAAAGGGGAGCGAAAGAACAACATCAAATTCAACCAAGGGTGAGATGGTGCACAGAACTCTCCCTGAAGAATTCAGCAGCTGGCCTCATGTGTTGCTGGCGATTGGAACGTTCGGAGACGATAATCTGAATCAAGCACGCCCAAAACGGTCTCAGGAGAATCCATCATCTTCCCTGGAACAACATCTTCAAGATCTTACACCTGAAGAACTAAACATACTTCACAAAGAGTTCAATCTGTTATTGGATGAACACCTTGAGCAATCGGGTCCATCCTTGGAATTTGAAGTCAGCCAGCATTGTCCATCAAACATATTTCTTACTAGAAGCTTCGAATCCGAAACATCAAAGAACGAACTATTTTACGACGAGCTGATAAAGAAGAGCGATAGTTTCCAGCATGTCATACTCAGCAAAAGCAAAGATGCAGGTACGGGAGCTCACGACACTACAGTCATTGGCAAGAGAACTTTATCCTTCCTTCTCAAGAAGATTTTCGTCTGCGGAGGTGGTATCGCACCCGCTACAGTTGCTCCTCCTCCGAGAATCATAACTCTGGAGTCGAAAATGGAGAAGATGTTGAGGACAATACTCCAAAAGAAGATATACCCTCAAAACTCCAATGTCAGAACATCATCTATGAAAAAGTACCTGAAGAGGAAAAACAAGCAAAAAGATGAAAACGAAAACGAAAACGAAAACGGAAAGAACGACAAGAAGTGCGATGGAAGTAAATGGGTCCAGACTGATTCTGAATGTCAATATTGTTTTAGAAATCTGAGAAGCTACCACTGCCAAAGGAAAGATCACAAGACATCACTTTCTTGCTTGGTTGCTTGA

Protein sequence

MRILSWMQGKKTNGRKGSERTTSNSTKGEMVHRTLPEEFSSWPHVLLAIGTFGDDNLNQARPKRSQENPSSSLEQHLQDLTPEELNILHKEFNLLLDEHLEQSGPSLEFEVSQHCPSNIFLTRSFESETSKNELFYDELIKKSDSFQHVILSKSKDAGTGAHDTTVIGKRTLSFLLKKIFVCGGGIAPATVAPPPRIITLESKMEKMLRTILQKKIYPQNSNVRTSSMKKYLKRKNKQKDENENENENGKNDKKCDGSKWVQTDSECQYCFRNLRSYHCQRKDHKTSLSCLVA

Homology

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BLAST of Carg12946-RA vs. NCBI nr
Match: XP_022960800.1 (uncharacterized protein LOC111461494 isoform X1 [Cucurbita moschata])

HSP 1 Score: 487.3 bits (1253), Expect = 3.7e-134
Identity = 262/269 (97.40%), Postives = 264/269 (98.14%), Query Frame = 0


Query: 1   MRILSWMQGKKTNGRKGSERTTSNSTKGEMVHRTLPEEFSSWPHVLLAIGTFGDDNLNQA 60
           MRILSWMQGKKTNGRKGS+RTTSNSTKGEMVHRTLPEEFSSWPHVLLAIGTFGDDNLNQA
Sbjct: 1   MRILSWMQGKKTNGRKGSKRTTSNSTKGEMVHRTLPEEFSSWPHVLLAIGTFGDDNLNQA 60

Query: 61  RPKRSQENPSSSLEQHLQDLTPEELNILHKEFNLLLDEHLEQSGPSLEFEVSQHCPSNIF 120
           RPKRSQENPSSSLEQHLQDLTPEELNILHKEFNLLLDEHLEQSGPSLEFEVSQHCPSNIF
Sbjct: 61  RPKRSQENPSSSLEQHLQDLTPEELNILHKEFNLLLDEHLEQSGPSLEFEVSQHCPSNIF 120

Query: 121 LTRSFESETSKNELFYDELIKKSDSFQHVILSKSKDAGTGAHDTTVIGKRTLSFLLKKIF 180
           LTRSFESETSKNELFYDELIKKSDSFQHVILSK+KDAGTGAHDTTVIGKRTLSFLLKKIF
Sbjct: 121 LTRSFESETSKNELFYDELIKKSDSFQHVILSKNKDAGTGAHDTTVIGKRTLSFLLKKIF 180

Query: 181 VCGGGIAPATVAPPPRIITLESKMEKMLRTILQKKIYPQNSNVRTSSMKKYLKXXXXXXX 240
           VCGGGIAPATVAPPPRIITLESKMEKMLRTILQKKIYPQNSNVRTSSMKKYLK   XXXX
Sbjct: 181 VCGGGIAPATVAPPPRIITLESKMEKMLRTILQKKIYPQNSNVRTSSMKKYLK--RXXXX 240

Query: 241 XXXXXXXXXXXDKKCDGSKWVQTDSECQY 270
           XXXXXXXXX  DKKCDGSKWVQTDSECQY
Sbjct: 241 XXXXXXXXXKNDKKCDGSKWVQTDSECQY 267

[Close]

BLAST of Carg12946-RA vs. NCBI nr
Match: XP_022960801.1 (uncharacterized protein LOC111461494 isoform X2 [Cucurbita moschata])

HSP 1 Score: 479.6 bits (1233), Expect = 7.8e-132
Identity = 259/266 (97.37%), Postives = 261/266 (98.12%), Query Frame = 0


Query: 1   MRILSWMQGKKTNGRKGSERTTSNSTKGEMVHRTLPEEFSSWPHVLLAIGTFGDDNLNQA 60
           MRILSWMQGKKTNGRKGS+RTTSNSTKGEMVHRTLPEEFSSWPHVLLAIGTFGDDNLNQA
Sbjct: 1   MRILSWMQGKKTNGRKGSKRTTSNSTKGEMVHRTLPEEFSSWPHVLLAIGTFGDDNLNQA 60

Query: 61  RPKRSQENPSSSLEQHLQDLTPEELNILHKEFNLLLDEHLEQSGPSLEFEVSQHCPSNIF 120
           RPKRSQENPSSSLEQHLQDLTPEELNILHKEFNLLLDEHLEQSGPSLEFEVSQHCPSNIF
Sbjct: 61  RPKRSQENPSSSLEQHLQDLTPEELNILHKEFNLLLDEHLEQSGPSLEFEVSQHCPSNIF 120

Query: 121 LTRSFESETSKNELFYDELIKKSDSFQHVILSKSKDAGTGAHDTTVIGKRTLSFLLKKIF 180
           LTRSFESETSKNELFYDELIKKSDSFQHVILSK+KDAGTGAHDTTVIGKRTLSFLLKKIF
Sbjct: 121 LTRSFESETSKNELFYDELIKKSDSFQHVILSKNKDAGTGAHDTTVIGKRTLSFLLKKIF 180

Query: 181 VCGGGIAPATVAPPPRIITLESKMEKMLRTILQKKIYPQNSNVRTSSMKKYLKXXXXXXX 240
           VCGGGIAPATVAPPPRIITLESKMEKMLRTILQKKIYPQNSNVRTSSMKKYLK   XXXX
Sbjct: 181 VCGGGIAPATVAPPPRIITLESKMEKMLRTILQKKIYPQNSNVRTSSMKKYLK--RXXXX 240

Query: 241 XXXXXXXXXXXDKKCDGSKWVQTDSE 267
           XXXXXXXXX  DKKCDGSKWVQTDSE
Sbjct: 241 XXXXXXXXXKNDKKCDGSKWVQTDSE 264

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BLAST of Carg12946-RA vs. NCBI nr
Match: XP_023516153.1 (uncharacterized protein LOC111780100 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 466.8 bits (1200), Expect = 5.2e-128
Identity = 256/269 (95.17%), Postives = 261/269 (97.03%), Query Frame = 0


Query: 1   MRILSWMQGKKTNGRKGSERTTSNSTKGEMVHRTLPEEFSSWPHVLLAIGTFGDDNLNQA 60
           MRILSWMQGKKTNGRKGS+RTTSNSTK EMVHRTLPEEFS+WPHVLLAIGTFGDDNLNQA
Sbjct: 1   MRILSWMQGKKTNGRKGSKRTTSNSTKDEMVHRTLPEEFSNWPHVLLAIGTFGDDNLNQA 60

Query: 61  RPKRSQENPSSSLEQHLQDLTPEELNILHKEFNLLLDEHLEQSGPSLEFEVSQHCPSNIF 120
           RPK SQENPSSSL+QHLQDLTPEELNILHKEFNLLLDEHL+QSGPSLEFEVSQHCPSNIF
Sbjct: 61  RPKSSQENPSSSLQQHLQDLTPEELNILHKEFNLLLDEHLKQSGPSLEFEVSQHCPSNIF 120

Query: 121 LTRSFESETSKNELFYDELIKKSDSFQHVILSKSKDAGTGAHDTTVIGKRTLSFLLKKIF 180
           LTRSFESETSKNELFYD+LIKKSDSFQHVILSKSKDAG GAHDTTVIGKR LSFLLKKIF
Sbjct: 121 LTRSFESETSKNELFYDKLIKKSDSFQHVILSKSKDAGPGAHDTTVIGKRNLSFLLKKIF 180

Query: 181 VCGGGIAPATVAPPPRIITLESKMEKMLRTILQKKIYPQNSNVRTSSMKKYLKXXXXXXX 240
           VCGGGIAPATVAPPPRIITLESKMEKMLRTILQKKIYPQNSNVRTSSMKKYL  XXXXXX
Sbjct: 181 VCGGGIAPATVAPPPRIITLESKMEKMLRTILQKKIYPQNSNVRTSSMKKYL--XXXXXX 240

Query: 241 XXXXXXXXXXXDKKCDGSKWVQTDSECQY 270
           XXXXXXXXXXX  KCDGSKWVQTDSECQY
Sbjct: 241 XXXXXXXXXXXXXKCDGSKWVQTDSECQY 267

[Close]

BLAST of Carg12946-RA vs. NCBI nr
Match: XP_023516154.1 (uncharacterized protein LOC111780100 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 459.1 bits (1180), Expect = 1.1e-125
Identity = 253/266 (95.11%), Postives = 258/266 (96.99%), Query Frame = 0


Query: 1   MRILSWMQGKKTNGRKGSERTTSNSTKGEMVHRTLPEEFSSWPHVLLAIGTFGDDNLNQA 60
           MRILSWMQGKKTNGRKGS+RTTSNSTK EMVHRTLPEEFS+WPHVLLAIGTFGDDNLNQA
Sbjct: 1   MRILSWMQGKKTNGRKGSKRTTSNSTKDEMVHRTLPEEFSNWPHVLLAIGTFGDDNLNQA 60

Query: 61  RPKRSQENPSSSLEQHLQDLTPEELNILHKEFNLLLDEHLEQSGPSLEFEVSQHCPSNIF 120
           RPK SQENPSSSL+QHLQDLTPEELNILHKEFNLLLDEHL+QSGPSLEFEVSQHCPSNIF
Sbjct: 61  RPKSSQENPSSSLQQHLQDLTPEELNILHKEFNLLLDEHLKQSGPSLEFEVSQHCPSNIF 120

Query: 121 LTRSFESETSKNELFYDELIKKSDSFQHVILSKSKDAGTGAHDTTVIGKRTLSFLLKKIF 180
           LTRSFESETSKNELFYD+LIKKSDSFQHVILSKSKDAG GAHDTTVIGKR LSFLLKKIF
Sbjct: 121 LTRSFESETSKNELFYDKLIKKSDSFQHVILSKSKDAGPGAHDTTVIGKRNLSFLLKKIF 180

Query: 181 VCGGGIAPATVAPPPRIITLESKMEKMLRTILQKKIYPQNSNVRTSSMKKYLKXXXXXXX 240
           VCGGGIAPATVAPPPRIITLESKMEKMLRTILQKKIYPQNSNVRTSSMKKYL  XXXXXX
Sbjct: 181 VCGGGIAPATVAPPPRIITLESKMEKMLRTILQKKIYPQNSNVRTSSMKKYL--XXXXXX 240

Query: 241 XXXXXXXXXXXDKKCDGSKWVQTDSE 267
           XXXXXXXXXXX  KCDGSKWVQTDSE
Sbjct: 241 XXXXXXXXXXXXXKCDGSKWVQTDSE 264

[Close]

BLAST of Carg12946-RA vs. NCBI nr
Match: XP_022987325.1 (uncharacterized protein LOC111484913 isoform X1 [Cucurbita maxima])

HSP 1 Score: 444.5 bits (1142), Expect = 2.8e-121
Identity = 247/269 (91.82%), Postives = 256/269 (95.17%), Query Frame = 0


Query: 1   MRILSWMQGKKTNGRKGSERTTSNSTKGEMVHRTLPEEFSSWPHVLLAIGTFGDDNLNQA 60
           MRILSWMQGKK NGRK S+R TSNSTK EMVHRTLPEEFSSWPHVLLAIGTFGD+NLNQA
Sbjct: 1   MRILSWMQGKKANGRKESKR-TSNSTKDEMVHRTLPEEFSSWPHVLLAIGTFGDENLNQA 60

Query: 61  RPKRSQENPSSSLEQHLQDLTPEELNILHKEFNLLLDEHLEQSGPSLEFEVSQHCPSNIF 120
           RPK SQENPSSSL QH+QDLTPEELNILHKEFNLLLDEHL+QSGPSLEFEVSQHCPSN+ 
Sbjct: 61  RPKSSQENPSSSL-QHVQDLTPEELNILHKEFNLLLDEHLKQSGPSLEFEVSQHCPSNML 120

Query: 121 LTRSFESETSKNELFYDELIKKSDSFQHVILSKSKDAGTGAHDTTVIGKRTLSFLLKKIF 180
           LTRSFESET+KNE FYDELIKKSDSFQHVILSKSKDAGTGAHDTTVIGKRTLSFLLKKIF
Sbjct: 121 LTRSFESETTKNEPFYDELIKKSDSFQHVILSKSKDAGTGAHDTTVIGKRTLSFLLKKIF 180

Query: 181 VCGGGIAPATVAPPPRIITLESKMEKMLRTILQKKIYPQNSNVRTSSMKKYLKXXXXXXX 240
           VCGGGIAPATVAPPPRIITLESKMEKMLRTILQKKIYPQNSNVR SSMKKYL+ XXXXXX
Sbjct: 181 VCGGGIAPATVAPPPRIITLESKMEKMLRTILQKKIYPQNSNVRISSMKKYLRRXXXXXX 240

Query: 241 XXXXXXXXXXXDKKCDGSKWVQTDSECQY 270
           XXXXXXXXXXX   C+G+KWVQTDSECQY
Sbjct: 241 XXXXXXXXXXXXXTCNGNKWVQTDSECQY 267

[Close]

BLAST of Carg12946-RA vs. TAIR10
Match: AT1G17400.1 (unknown protein)

HSP 1 Score: 105.5 bits (262), Expect = 5.6e-23
Identity = 96/297 (32.32%), Postives = 143/297 (48.15%), Query Frame = 0


Query: 1   MRILSWMQGKKTNGRKGSERTTSNSTKGEMVHRTLPEEFSSWPHVLLAIGTFG--DDNLN 60
           M+   WMQ  K NG     RT+++S     V +   EEFS WPH LLAIGTFG   ++++
Sbjct: 1   MKFFGWMQ-NKLNG--DHNRTSTSSASSHHVKQEPREEFSDWPHALLAIGTFGTTSNSVS 60

Query: 61  QARPK----------------RSQENPSSSLEQHLQDLTPEELNILHKEFNLLLDEHLEQ 120
           +   K                  +E PSSS+  +L+D TPEE+  L KE   LL    ++
Sbjct: 61  ENESKNVHEEIEAEKKCTAQSEQEEEPSSSV--NLEDFTPEEVGKLQKELMKLLSRTKKR 120

Query: 121 SG-------PSLEFEVSQHCPSNIFLTRSFESETSKNELFYDELIKKSDSFQ--HVILSK 180
                     +L  +   +CPS++ + R   +  S   +   E  K+ D  +  +VIL +
Sbjct: 121 KSDVNRELMKNLPLDRFLNCPSSLEVDRRISNALSA-VVDSSEENKEEDMERTINVILGR 180

Query: 181 SKDAGTGAHDTTV---IGKRTLSFLLKKIFVCGGGIAPATVAPPPRIITLESKMEKMLRT 240
            K+    + +      I K ++S+L KKIFVC  GI+ A  +P  R    ES+MEK+L+ 
Sbjct: 181 CKEISIESKNNKKKRDISKNSVSYLFKKIFVCADGISTAP-SPSLRDTLQESRMEKLLKM 240

Query: 241 ILQKKIYPQNSNVRTS-SMKKYLKXXXXXXXXXXXXXXXXXXDKKCDGSKWVQTDSE 267
           +L KKI  Q S+  TS + K+YL+                      DG KWV+TDS+
Sbjct: 241 MLHKKINAQASSKPTSLTTKRYLQDKKQLSLKSEEEETSERRSSS-DGYKWVKTDSD 289

[Close]

BLAST of Carg12946-RA vs. TAIR10
Match: AT1G72490.1 (unknown protein)

HSP 1 Score: 94.0 bits (232), Expect = 1.7e-19
Identity = 90/297 (30.30%), Postives = 136/297 (45.79%), Query Frame = 0


Query: 1   MRILSWMQGKKTNGRKGSERTTSNSTKGEMVHRTLPEEFSSWPHVLLAIGTFGD------ 60
           M+   WMQ K    ++ + R + +S           EEF+ WPH LLAIGTFG+      
Sbjct: 1   MKFFGWMQNKLHGKQEITHRPSISSASSHHPR----EEFNDWPHGLLAIGTFGNKKQTPQ 60

Query: 61  ------------DNLN-QARPKRSQENPSSSLEQHLQDLTPEELNILHKEFNLLLDEHLE 120
                        NL+ + R  +  +   SS +   +D TPEE+  L KE   LL    +
Sbjct: 61  TLDQEVIQEETVSNLHVEGRQAQDTDQELSSSDDLEEDFTPEEVGKLQKELTKLLTRRSK 120

Query: 121 QSGPSLEFEVSQ-------HCPSNIFLTRSFESETSKNELFYDELIKKSDSFQHVILSKS 180
           +    +  E++        +CPS++ + R   +     +   +E I+++ S   VIL + 
Sbjct: 121 KRKSDVNRELANLPLDRFLNCPSSLEVDRRISNALCDEK---EEDIERTIS---VILGRC 180

Query: 181 KDAGTGAHDTTVIGKRTL-----SFLLKKIFVCGGGIAPATVAPPPRIITLESKMEKMLR 240
           K   T + + T   KR L     S LLKK+FVC  G +P    P  R    E++MEK+LR
Sbjct: 181 KAISTESKNKTKKNKRDLSKTSVSHLLKKMFVCTEGFSPVP-RPILRDTFQETRMEKLLR 240

Query: 241 TILQKKIYPQNSNVRTSSMKKYLKXXXXXXXXXXXXXXXXXXDKKCDGSKWVQTDSE 267
            +L KK+  Q S+ +TS+ KKYL+                      DG KWV+TDS+
Sbjct: 241 MMLHKKVNTQASSKQTST-KKYLQDKQQLSLKNEEEEGR----SSNDGGKWVKTDSD 281

[Close]

BLAST of Carg12946-RA vs. TAIR10
Match: AT1G19115.3 (unknown protein)

HSP 1 Score: 72.8 bits (177), Expect = 4.0e-13
Identity = 50/122 (40.98%), Postives = 63/122 (51.64%), Query Frame = 0


Query: 154 SKDAGTGAHDTTVIGKRTLSFLLKKIFVCGGGIAPATVAPPPRIITL-------ESKMEK 213
           SKD      D T+  K++LSFLLKK+FVC  G        PP ++ L        ++MEK
Sbjct: 69  SKDITPVNTDVTIGKKKSLSFLLKKMFVCTSGF-----KTPPPLLDLSRGDSLHNTRMEK 128

Query: 214 MLRTILQKKIYPQNSNVRTSSMKKYLKXXXXXXXXXXXXXXXXXXDKKCDGSKWVQTDSE 269
           MLRTIL KKI+PQ SN   S  KKYL+                      D +KWV+TDSE
Sbjct: 129 MLRTILNKKIHPQRSN---SIAKKYLESNHKIMDEAR---------SSVDANKWVKTDSE 173

[Close]

BLAST of Carg12946-RA vs. TrEMBL
Match: tr|A0A1S3BRG2|A0A1S3BRG2_CUCME (uncharacterized protein LOC103492380 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492380 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.1e-92
Identity = 206/269 (76.58%), Postives = 231/269 (85.87%), Query Frame = 0


Query: 1   MRILSWMQGKKTNGRKGSERTTSNSTKGEMVHRTLPEEFSSWPHVLLAIGTFGDDNLNQA 60
           MRIL+WMQGKK +GRKGS+R TSNS   E+VH+T P+EFS+W HVLLAIGTFGD+NLN+A
Sbjct: 1   MRILNWMQGKKPSGRKGSKR-TSNSINDEIVHKTHPKEFSNWSHVLLAIGTFGDENLNEA 60

Query: 61  RPKRSQENPSSSLEQHLQDLTPEELNILHKEFNLLLDEHLEQSGPSLEFEVSQHCPSNIF 120
           RPKRSQENPSSSL+QHL+DLTPEELNIL KEFNLLL EHL+QSGP+LEFEVS+HCPSNIF
Sbjct: 61  RPKRSQENPSSSLQQHLKDLTPEELNILQKEFNLLLAEHLKQSGPTLEFEVSKHCPSNIF 120

Query: 121 LTR--SFESETSKNELFYDELIKKSDSFQHVILSKSKDAGTGAHDTTVIGKRTLSFLLKK 180
           L R  +F SET+K EL+Y+ELIKKS+ FQHVILSK KD G  A+DT +IGK+TLS LLKK
Sbjct: 121 LNRQLTFGSETTKKELYYEELIKKSNIFQHVILSKGKDVGVEANDTAIIGKKTLSLLLKK 180

Query: 181 IFVCGGGIA-PATVAPPPRIITLESKMEKMLRTILQKKIYPQNSNVRTSSMKKYLKXXXX 240
           IFVCGGG A PA V PP RI TLES MEK+LRTILQKKIYP++SNVRTSS      XXXX
Sbjct: 181 IFVCGGGTAPPAVVTPPLRITTLESTMEKILRTILQKKIYPRSSNVRTSSK----XXXXX 240

Query: 241 XXXXXXXXXXXXXXDKKCDGSKWVQTDSE 267
           XXXXXXXXXXXXXX    DGSKWVQTDSE
Sbjct: 241 XXXXXXXXXXXXXXXXXXDGSKWVQTDSE 264

[Close]

BLAST of Carg12946-RA vs. TrEMBL
Match: tr|A0A0A0LWQ1|A0A0A0LWQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G597130 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.1e-92
Identity = 204/268 (76.12%), Postives = 226/268 (84.33%), Query Frame = 0


Query: 1   MRILSWMQGKKTNGRKGSERTTSNSTKGEMVHRTLPEEFSSWPHVLLAIGTFGDDNLNQA 60
           MRIL+WMQGKK +GRKGS+RTTSNS   E+VH+T PEEFS+W HVLLAIGTFGD+NLN+A
Sbjct: 1   MRILNWMQGKKPSGRKGSKRTTSNSINDEIVHKTRPEEFSNWSHVLLAIGTFGDENLNEA 60

Query: 61  RPKRSQENPSSSLEQHLQDLTPEELNILHKEFNLLLDEHLEQSGPSLEFEVSQHCPSNIF 120
           RPKRSQEN SSSL+QHL+DLTPEELNIL KEFNLLL EHL+QSGP+LEFEVS+HCPSNIF
Sbjct: 61  RPKRSQENSSSSLQQHLKDLTPEELNILQKEFNLLLAEHLKQSGPTLEFEVSKHCPSNIF 120

Query: 121 LTR--SFESETSKNELFYDELIKKSDSFQHVILSKSKDAGTGAHDTTVIGKRTLSFLLKK 180
           L R  +F SET+K EL Y+ELIKKS+ FQHVILSK KD G  A+DT +IGKRTLS LLKK
Sbjct: 121 LNRQLTFGSETTKKELCYEELIKKSNIFQHVILSKGKDVGVDANDTAIIGKRTLSLLLKK 180

Query: 181 IFVCGGGIAPATVAPPPRIITLESKMEKMLRTILQKKIYPQNSNVRTSSMKKYLKXXXXX 240
           IFVCGGG AP  V  PP    LESKMEK+LRTILQKKIYP++SNVRTSS      XXXXX
Sbjct: 181 IFVCGGGTAPPAVVTPPLRPALESKMEKILRTILQKKIYPRSSNVRTSSK----XXXXXX 240

Query: 241 XXXXXXXXXXXXXDKKCDGSKWVQTDSE 267
           XXXXXXXXXXXXX     GSKWVQTDSE
Sbjct: 241 XXXXXXXXXXXXXXXXXXGSKWVQTDSE 264

[Close]

BLAST of Carg12946-RA vs. TrEMBL
Match: tr|A0A1S3BR41|A0A1S3BR41_CUCME (uncharacterized protein LOC103492380 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492380 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 5.8e-91
Identity = 207/298 (69.46%), Postives = 232/298 (77.85%), Query Frame = 0


Query: 1   MRILSWMQGKKTNGRKGSERTTSNSTKGEMVHRTLPEEFSSWPHVLLAIGTFGDDNLNQA 60
           MRIL+WMQGKK +GRKGS+R TSNS   E+VH+T P+EFS+W HVLLAIGTFGD+NLN+A
Sbjct: 1   MRILNWMQGKKPSGRKGSKR-TSNSINDEIVHKTHPKEFSNWSHVLLAIGTFGDENLNEA 60

Query: 61  RPKRSQENPSSSLEQHLQDLTPEELNILHKEFNLLLDEHLEQSGPSLEFEVSQHCPSNIF 120
           RPKRSQENPSSSL+QHL+DLTPEELNIL KEFNLLL EHL+QSGP+LEFEVS+HCPSNIF
Sbjct: 61  RPKRSQENPSSSLQQHLKDLTPEELNILQKEFNLLLAEHLKQSGPTLEFEVSKHCPSNIF 120

Query: 121 LTR--SFESETSKNELFYDELIKKSDSFQHVILSKSKDAGTGAHDTTVIGKRTLSFLLKK 180
           L R  +F SET+K EL+Y+ELIKKS+ FQHVILSK KD G  A+DT +IGK+TLS LLKK
Sbjct: 121 LNRQLTFGSETTKKELYYEELIKKSNIFQHVILSKGKDVGVEANDTAIIGKKTLSLLLKK 180

Query: 181 IFVCGGGIA-PATVAPPPRIITLESKMEK-----------------------------ML 240
           IFVCGGG A PA V PP RI TLES MEK                             +L
Sbjct: 181 IFVCGGGTAPPAVVTPPLRITTLESTMEKVESRTHINAQIFDLNFGNLILISISGCKQIL 240

Query: 241 RTILQKKIYPQNSNVRTSSMKKYLKXXXXXXXXXXXXXXXXXXDKKCDGSKWVQTDSE 267
           RTILQKKIYP++SNVRTSS KKYL    XXXXXXXXXXXXXXX    DGSKWVQTDSE
Sbjct: 241 RTILQKKIYPRSSNVRTSSKKKYL----XXXXXXXXXXXXXXXXXXSDGSKWVQTDSE 293

[Close]

BLAST of Carg12946-RA vs. TrEMBL
Match: tr|A0A2P6RYU9|A0A2P6RYU9_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0146241 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 4.8e-37
Identity = 118/282 (41.84%), Postives = 162/282 (57.45%), Query Frame = 0


Query: 1   MRILSWMQGKKTNGRKGSERTTSNSTKGEMVHRTLPEEFSSWPHVLLAIGTFGDDNLNQA 60
           MR+  W+QG K NG++G+++  + ST   +V     EEF+ WPH LLAIGTFG++NL + 
Sbjct: 1   MRLFGWVQG-KLNGKQGNKKPNTASTSTHLVKPEPREEFNDWPHGLLAIGTFGNNNLKEN 60

Query: 61  RPKRS---QENPSSSLEQHLQDLTPEELNILHKEFNLLLDE--HLEQSGPSLEFEVSQHC 120
              RS   QE PSSS ++ L++ TPEE+  LHKE   LL     +E+   +L  +   +C
Sbjct: 61  TDHRSQNIQEEPSSS-DEILENFTPEEVGKLHKELTKLLTRKPDIEKEIAALPLDRFLNC 120

Query: 121 PSNIFLTRSFESE-TSKNELFYDELIKKSDSFQHVILSKSKDAGTGAHDTTVIGKRTLSF 180
           PS++ + R   +   S ++   DE I+K+ S   VIL + KD    + +   IGK++LSF
Sbjct: 121 PSSLEVDRRTSNVLCSDSDDPKDEDIEKTIS---VILGRCKDICADS-NKKAIGKKSLSF 180

Query: 181 LLKKIFVCGGGIAPATVAPPPRIITLESKMEKMLRTILQKKIYPQNSNVRTSSMKKYLKX 240
           LLKK+FVC  G AP   AP  R    ES+MEK LR +L KKI    S+ R SSMKKYL+ 
Sbjct: 181 LLKKMFVCRSGFAP---APSLRDTFQESRMEKFLRLMLNKKIINPQSSSRASSMKKYLED 240

Query: 241 XXXXXXXXXXXXXXXXXDKKCDGSKWVQTDSECQYCFRNLRS 277
                            +K  DG KWV+TDSEC+ C  N RS
Sbjct: 241 TRQSPTKKGNNNEENTKEKINDGCKWVKTDSECK-CNLNFRS 272

[Close]

BLAST of Carg12946-RA vs. TrEMBL
Match: tr|F6HXU8|F6HXU8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_09s0002g00940 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.9e-34
Identity = 112/271 (41.33%), Postives = 150/271 (55.35%), Query Frame = 0


Query: 3   ILSWMQGKKTNGRKGSERTTSNSTKGEMVHRTLPEEFSSWPHVLLAIGTFGDDNLNQARP 62
           +  WMQ  K N R+G+ +T + S         + EEFS WPH LLAIGTFG+++L +   
Sbjct: 9   LFGWMQ-NKLNVRQGNRKTNAPSATHLTKQEPIKEEFSDWPHGLLAIGTFGNNDLKENPE 68

Query: 63  KRS---QENPSSSLEQHLQDLTPEELNILHKEFNLLLD----EHLEQSGPSLEFEVSQHC 122
            ++   QE+PSSS  + L D TPEE+  L KE   LL      ++E+    L  +   +C
Sbjct: 69  SQNPPHQEDPSSS--EELLDFTPEEIGKLQKELTKLLSRKPASNVEKEIAELPLDKFLNC 128

Query: 123 PSNIFLTRSFESETSKNELFYDELIKKSDSFQHVILSKSKDAGTGAHDTTVIGKRTLSFL 182
           PS++ + R   +    +    DE I+++ S   VIL K ++  T  H    IGKR+LSFL
Sbjct: 129 PSSLEVDRRISATLCSDSDDKDENIERTIS---VILGKCREVCTD-HGKKNIGKRSLSFL 188

Query: 183 LKKIFVCGGGIAPATVAPPPRIITLESKMEKMLRTILQKKIYPQNSNVRTSSMKKYLKXX 242
           LKK+FVC  G AP   AP  R    ES+MEK+LR +L KKIYPQNS+ R SSMKKYL+  
Sbjct: 189 LKKMFVCRSGFAP---APSLRDTLQESRMEKLLRAMLHKKIYPQNSS-RASSMKKYLEDK 248

Query: 243 XXXXXXXXXXXXXXXXDKKCDGSKWVQTDSE 267
                            K  DG KWV+TDSE
Sbjct: 249 QRPKRENEDEVQEKHKAK--DGYKWVKTDSE 266

The following BLAST results are available for this feature:

BLAST of Carg12946-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022960800.1	3.7e-134	97.40	uncharacterized protein LOC111461494 isoform X1 [Cucurbita moschata]	[more]
XP_022960801.1	7.8e-132	97.37	uncharacterized protein LOC111461494 isoform X2 [Cucurbita moschata]	[more]
XP_023516153.1	5.2e-128	95.17	uncharacterized protein LOC111780100 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023516154.1	1.1e-125	95.11	uncharacterized protein LOC111780100 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022987325.1	2.8e-121	91.82	uncharacterized protein LOC111484913 isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg12946-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G17400.1	5.6e-23	32.32	unknown protein	[more]
AT1G72490.1	1.7e-19	30.30	unknown protein	[more]
AT1G19115.3	4.0e-13	40.98	unknown protein	[more]

BLAST of Carg12946-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg12946-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BRG2\|A0A1S3BRG2_CUCME	1.1e-92	76.58	uncharacterized protein LOC103492380 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LWQ1\|A0A0A0LWQ1_CUCSA	1.1e-92	76.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G597130 PE=4 SV=1	[more]
tr\|A0A1S3BR41\|A0A1S3BR41_CUCME	5.8e-91	69.46	uncharacterized protein LOC103492380 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2P6RYU9\|A0A2P6RYU9_ROSCH	4.8e-37	41.84	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0146241 PE=4...	[more]
tr\|F6HXU8\|F6HXU8_VITVI	2.9e-34	41.33	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_09s0002g00940 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg12946	Carg12946	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg12946-RA	Carg12946-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12946-RA.three_prime_UTR.1	Carg12946-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12946-RA.CDS.5	Carg12946-RA.CDS.5	CDS
Carg12946-RA.CDS.4	Carg12946-RA.CDS.4	CDS
Carg12946-RA.CDS.3	Carg12946-RA.CDS.3	CDS
Carg12946-RA.CDS.2	Carg12946-RA.CDS.2	CDS
Carg12946-RA.CDS.1	Carg12946-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12946-RA.five_prime_UTR.1	Carg12946-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12946-RA.exon.5	Carg12946-RA.exon.5	exon
Carg12946-RA.exon.4	Carg12946-RA.exon.4	exon
Carg12946-RA.exon.3	Carg12946-RA.exon.3	exon
Carg12946-RA.exon.2	Carg12946-RA.exon.2	exon
Carg12946-RA.exon.1	Carg12946-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 228..252
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 227..255
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 234..255
None	No IPR available	PANTHER	PTHR34045	FAMILY NOT NAMED	coord: 1..267
None	No IPR available	PANTHER	PTHR34045:SF3	SUBFAMILY NOT NAMED	coord: 1..267