Carg12819-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12819-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DUF4228 domain protein
Location	Cucurbita_argyrosperma_scaffold_043 : 475038 .. 475352 (-)
Sequence length	315

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAACTGTTTGCGGCGGGATGGCGCGGCGGCGCAGTGGGCCGGCGAGGAGTGGGACTTCCTAGCGGCGGAGGACGACGGCCGGGAAGGGCTTCTCGGCGAAATCGAGAAGAAAAAGAGTTCAACGGCGGCGACAGAGGTGAAGATTAAGATCACGAAGAGACAGCTGGAGGAGCTTTTGGGGAAAGTGGATATTAAGGAGATGTCCGTACAGCAGGTTCTGGCTCAGTTGATCGGCGTCGGCGATCAGTTTCACGAATCTCGCCACCGTCACTGGCGGCCGGTGTTGCAGAGTATACCGGAAGTTGATTGA

mRNA sequence

ATGGGCAACTGTTTGCGGCGGGATGGCGCGGCGGCGCAGTGGGCCGGCGAGGAGTGGGACTTCCTAGCGGCGGAGGACGACGGCCGGGAAGGGCTTCTCGGCGAAATCGAGAAGAAAAAGAGTTCAACGGCGGCGACAGAGGTGAAGATTAAGATCACGAAGAGACAGCTGGAGGAGCTTTTGGGGAAAGTGGATATTAAGGAGATGTCCGTACAGCAGGTTCTGGCTCAGTTGATCGGCGTCGGCGATCAGTTTCACGAATCTCGCCACCGTCACTGGCGGCCGGTGTTGCAGAGTATACCGGAAGTTGATTGA

Coding sequence (CDS)

ATGGGCAACTGTTTGCGGCGGGATGGCGCGGCGGCGCAGTGGGCCGGCGAGGAGTGGGACTTCCTAGCGGCGGAGGACGACGGCCGGGAAGGGCTTCTCGGCGAAATCGAGAAGAAAAAGAGTTCAACGGCGGCGACAGAGGTGAAGATTAAGATCACGAAGAGACAGCTGGAGGAGCTTTTGGGGAAAGTGGATATTAAGGAGATGTCCGTACAGCAGGTTCTGGCTCAGTTGATCGGCGTCGGCGATCAGTTTCACGAATCTCGCCACCGTCACTGGCGGCCGGTGTTGCAGAGTATACCGGAAGTTGATTGA

Protein sequence

MGNCLRRDGAAAQWAGEEWDFLAAEDDGREGLLGEIEKKKSSTAATEVKIKITKRQLEELLGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD

Homology

[Close]

BLAST of Carg12819-RA vs. NCBI nr
Match: XP_022936225.1 (uncharacterized protein LOC111442898 [Cucurbita moschata])

HSP 1 Score: 208.8 bits (530), Expect = 9.1e-51
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MGNCLRRDGAAAQWAGEEWDFLAAEDDGREGLLGEIEKKKSSTAATEVKIKITKRQLEEL 60
           MGNCLRRDGAAAQWAGEEWDFLAAEDDGREGLLGEIEKKKSSTAATEVKIKITKRQLEEL
Sbjct: 1   MGNCLRRDGAAAQWAGEEWDFLAAEDDGREGLLGEIEKKKSSTAATEVKIKITKRQLEEL 60

Query: 61  LGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 105
           LGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD
Sbjct: 61  LGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 104

[Close]

BLAST of Carg12819-RA vs. NCBI nr
Match: XP_023536165.1 (uncharacterized protein LOC111797410 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 205.3 bits (521), Expect = 1.0e-49
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MGNCLRRDGAAAQWAGEEWDFLAAEDDGREGLLGEIEKKKSSTAATEVKIKITKRQLEEL 60
           MGNC+RRDGAAAQWAGEEWDFLAAEDDGREGLLGEIEKKKSSTAATEVKIKITKRQLEEL
Sbjct: 1   MGNCIRRDGAAAQWAGEEWDFLAAEDDGREGLLGEIEKKKSSTAATEVKIKITKRQLEEL 60

Query: 61  LGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 105
           LGKVDIKEMSVQQVLAQLIGV DQFHESRHRHWRPVLQSIPEVD
Sbjct: 61  LGKVDIKEMSVQQVLAQLIGVDDQFHESRHRHWRPVLQSIPEVD 104

[Close]

BLAST of Carg12819-RA vs. NCBI nr
Match: XP_022975730.1 (uncharacterized protein LOC111475920 [Cucurbita maxima])

HSP 1 Score: 202.2 bits (513), Expect = 8.5e-49
Identity = 101/104 (97.12%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MGNCLRRDGAAAQWAGEEWDFLAAEDDGREGLLGEIEKKKSSTAATEVKIKITKRQLEEL 60
           MGNCLRRDGAAAQWAGEEWD LAAEDDGREGLLGE EKKKSST ATEVKIKITKRQLEEL
Sbjct: 1   MGNCLRRDGAAAQWAGEEWDLLAAEDDGREGLLGENEKKKSSTTATEVKIKITKRQLEEL 60

Query: 61  LGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 105
           LGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD
Sbjct: 61  LGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 104

[Close]

BLAST of Carg12819-RA vs. NCBI nr
Match: XP_022139678.1 (uncharacterized protein LOC111010526 [Momordica charantia])

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 75/104 (72.12%), Postives = 81/104 (77.88%), Query Frame = 0


Query: 1   MGNCLRRDGAAAQWAGEEWDFLAAEDDGREGLLGEIEKKKSSTAATEVKIKITKRQLEEL 60
           MGNCLRRDGAA +WAGEEW FLA E  G             + AATEVKIKITK+QLEEL
Sbjct: 1   MGNCLRRDGAAERWAGEEWGFLAEEKQG--------SAAAPTAAATEVKIKITKKQLEEL 60

Query: 61  LGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 105
           LGK D+K +SVQQVLAQLI VGDQFHESRHR WRPVLQSIPE+D
Sbjct: 61  LGKADVKGLSVQQVLAQLIAVGDQFHESRHRPWRPVLQSIPEMD 96

[Close]

BLAST of Carg12819-RA vs. NCBI nr
Match: XP_017605615.1 (PREDICTED: uncharacterized protein LOC108452348 [Gossypium arboreum])

HSP 1 Score: 112.8 bits (281), Expect = 6.8e-22
Identity = 63/120 (52.50%), Postives = 82/120 (68.33%), Query Frame = 0


Query: 1   MGNCLRRDGAAAQWAGEEWDFLAA---EDDG-------REGLLGEIEKK------KSSTA 60
           MGNCLR   ++ QWAG++W   AA   +DDG        +G++G+  +K       S+  
Sbjct: 1   MGNCLRHQ-SSTQWAGDDWGTTAADYGDDDGFSDIKTKEKGIVGDHHQKDGFITTSSTPT 60

Query: 61  ATEVKIKITKRQLEELLGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 105
             EVK+KITK+QLEELLG+VD+KE+SVQQVLAQLI V +QF E+  R WRP LQSIPEV+
Sbjct: 61  VHEVKVKITKKQLEELLGRVDVKELSVQQVLAQLINVSNQFDETNQRSWRPALQSIPEVN 119

[Close]

BLAST of Carg12819-RA vs. TAIR10
Match: AT4G21920.1 (unknown protein)

HSP 1 Score: 55.5 bits (132), Expect = 2.3e-08
Identity = 28/65 (43.08%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 47  EVKIKITKRQLEELLGKVDIKEMSVQQVLAQLI-GVGDQFHES------RHRHWRPVLQS 105
           E+KI+ITK++LE+L+  + +K ++ +++L++LI   GDQ   S       H+ W+PVLQS
Sbjct: 65  EIKIRITKKELEDLMRNIGLKSLTAEEILSKLIFEGGDQIGFSAVDVTNHHQPWKPVLQS 124

[Close]

BLAST of Carg12819-RA vs. TrEMBL
Match: tr|A0A0D2U1A6|A0A0D2U1A6_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G438000 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.9e-22
Identity = 63/120 (52.50%), Postives = 81/120 (67.50%), Query Frame = 0


Query: 1   MGNCLRRDGAAAQWAGEEWDFLAA---EDDG-------REGLLGEIEKK------KSSTA 60
           MGNCLR   ++ QWAG++W    A   EDDG        +G++G+  +K       S+  
Sbjct: 1   MGNCLRHQ-SSTQWAGDDWGTTVADYGEDDGFSDIKTKEKGIVGDHHQKDGFITTSSTPT 60

Query: 61  ATEVKIKITKRQLEELLGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 105
             EVK+KITK+QLEELLG+VD+KE+SVQQVLAQLI V +QF E+  R WRP LQSIPEV+
Sbjct: 61  VHEVKVKITKKQLEELLGRVDVKELSVQQVLAQLINVSNQFDETNQRSWRPALQSIPEVN 119

[Close]

BLAST of Carg12819-RA vs. TrEMBL
Match: tr|A0A1U8J884|A0A1U8J884_GOSHI (uncharacterized protein LOC107903327 OS=Gossypium hirsutum OX=3635 GN=LOC107903327 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.7e-22
Identity = 63/120 (52.50%), Postives = 82/120 (68.33%), Query Frame = 0


Query: 1   MGNCLRRDGAAAQWAGEEWDFLAA---EDDG-------REGLLGEIEKK------KSSTA 60
           MGNCLR   ++ QWAG++W   AA   +DDG        +G++G+  +K       S+  
Sbjct: 1   MGNCLRHQ-SSTQWAGDDWGTTAADYGDDDGFSDIKTKEKGIVGDHHQKDGFITTSSTPT 60

Query: 61  ATEVKIKITKRQLEELLGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 105
             EVK+KITK+QLEELLG+VD+KE+SVQQVLAQLI V +QF E+  R WRP LQSIPEV+
Sbjct: 61  VHEVKVKITKKQLEELLGRVDVKELSVQQVLAQLIHVSNQFDETNQRSWRPALQSIPEVN 119

[Close]

BLAST of Carg12819-RA vs. TrEMBL
Match: tr|V4TY97|V4TY97_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009680mg PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.7e-19
Identity = 60/123 (48.78%), Postives = 79/123 (64.23%), Query Frame = 0


Query: 1   MGNCLR-RDGAAAQWAGEEWDFLA-------AEDDGREGLL------GEIEKKKSSTAAT 60
           MGNC+R +   + QWAG++W  +         E+  +EGLL      G I    S+ ++T
Sbjct: 53  MGNCIRHQHQPSMQWAGDDWGAVVESASNHRTEEAKQEGLLLGGDKVGFITSPTSAASST 112

Query: 61  EVKIKITKRQLEELLGKVDIKEMSVQQVLAQLIGV-----GDQFHESRHRHWRPVLQSIP 105
           E+KIKITK+QLEELLGK D+K +SVQQVLA LI V      D++HE+  R WRP LQSIP
Sbjct: 113 EIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNVSSSNDRYHETNQRSWRPALQSIP 172

[Close]

BLAST of Carg12819-RA vs. TrEMBL
Match: tr|A0A061F4T5|A0A061F4T5_THECC (Expression of the gene is downregulated in the presence of paraquat, putative OS=Theobroma cacao OX=3641 GN=TCM_030889 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.7e-19
Identity = 63/129 (48.84%), Postives = 78/129 (60.47%), Query Frame = 0


Query: 1   MGNCLRRDGAAAQWAGEEWDFLAAEDDG----------------------REGLLGEIEK 60
           MGNCLR   ++ QWAG++W    AEDD                        +GLL   +K
Sbjct: 1   MGNCLRHQ-SSTQWAGDDWGTSPAEDDDSGFFASETTNDTCEYKAMMNMEEKGLLRNHQK 60

Query: 61  K---KSSTAATEVKIKITKRQLEELLGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRP 105
                SS    EVK+KITK+QLEELLG+VD+KE+SVQQVLAQLI V +Q+ E+  R WRP
Sbjct: 61  NGFTTSSATTHEVKVKITKKQLEELLGRVDVKELSVQQVLAQLINVRNQY-ETSQRSWRP 120

[Close]

BLAST of Carg12819-RA vs. TrEMBL
Match: tr|A0A067F5K7|A0A067F5K7_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g033262mg PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.7e-19
Identity = 60/123 (48.78%), Postives = 79/123 (64.23%), Query Frame = 0


Query: 1   MGNCLR-RDGAAAQWAGEEWDFLA-------AEDDGREGLL------GEIEKKKSSTAAT 60
           MGNC+R +   + QWAG++W  +         E+  +EGLL      G I    S+ ++T
Sbjct: 1   MGNCIRHQHQPSMQWAGDDWGAVVESASNHRTEEAKQEGLLLGGDKVGFITSPTSAASST 60

Query: 61  EVKIKITKRQLEELLGKVDIKEMSVQQVLAQLIGV-----GDQFHESRHRHWRPVLQSIP 105
           E+KIKITK+QLEELLGK D+K +SVQQVLA LI V      D++HE+  R WRP LQSIP
Sbjct: 61  EIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNVSSSNDRYHETNQRSWRPALQSIP 120

The following BLAST results are available for this feature:

BLAST of Carg12819-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936225.1	9.1e-51	100.00	uncharacterized protein LOC111442898 [Cucurbita moschata]	[more]
XP_023536165.1	1.0e-49	98.08	uncharacterized protein LOC111797410 [Cucurbita pepo subsp. pepo]	[more]
XP_022975730.1	8.5e-49	97.12	uncharacterized protein LOC111475920 [Cucurbita maxima]	[more]
XP_022139678.1	1.2e-31	72.12	uncharacterized protein LOC111010526 [Momordica charantia]	[more]
XP_017605615.1	6.8e-22	52.50	PREDICTED: uncharacterized protein LOC108452348 [Gossypium arboreum]	[more]

BLAST of Carg12819-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21920.1	2.3e-08	43.08	unknown protein	[more]

BLAST of Carg12819-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg12819-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0D2U1A6\|A0A0D2U1A6_GOSRA	5.9e-22	52.50	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G438000 PE=4 ...	[more]
tr\|A0A1U8J884\|A0A1U8J884_GOSHI	7.7e-22	52.50	uncharacterized protein LOC107903327 OS=Gossypium hirsutum OX=3635 GN=LOC1079033...	[more]
tr\|V4TY97\|V4TY97_9ROSI	4.7e-19	48.78	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009680mg PE=4 ...	[more]
tr\|A0A061F4T5\|A0A061F4T5_THECC	4.7e-19	48.84	Expression of the gene is downregulated in the presence of paraquat, putative OS...	[more]
tr\|A0A067F5K7\|A0A067F5K7_CITSI	4.7e-19	48.78	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g033262mg PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg12819	Carg12819	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12819-RA.CDS.1	Carg12819-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12819-RA.exon.1	Carg12819-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg12819-RA	Carg12819-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33647:SF5	SUBFAMILY NOT NAMED	coord: 1..104
None	No IPR available	PANTHER	PTHR33647	FAMILY NOT NAMED	coord: 1..104